EWM25413.1, cds5216 (CDS) Nannochloropsis gaditana

Overview
NameEWM25413.1
Unique Namecds5216
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:480608..480663 -
Alignment locationCM002465.1:480433..480496 -
Alignment locationCM002465.1:480121..480335 -
Alignment locationCM002465.1:479717..479975 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25413.1
Productcyclophilin
Orig transcript idgnl|cribi|Naga_100005g16.6707.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:480608..480663 -
CM002465.1supercontigCM002465.1:480433..480496 -
CM002465.1supercontigCM002465.1:480121..480335 -
CM002465.1supercontigCM002465.1:479717..479975 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006457protein folding
GO:0000413protein peptidyl-prolyl isomerization
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0005515protein binding
GO:0003755peptidyl-prolyl cis-trans isomerase activity
Vocabulary: INTERPRO
TermDefinition
IPR020892Cyclophilin-type_PPIase_CS
IPR029000Cyclophilin-like_dom
IPR024936Cyclophilin-type_PPIase
IPR002130Cyclophilin-type_PPIase_dom
Homology
BLAST of EWM25413.1 vs. NCBI_GenBank
Match: gi|585107174|gb|EWM25413.1| (cyclophilin [Nannochloropsis gaditana])

HSP 1 Score: 402.519 bits (1033), Expect = 4.686e-142
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0
Query:    1 MAFAKSLAFMLGMATFALSQADDLTKVTHKVFFDINVADKPAGRIVFGLYGNTVPRTVENFRALCTGEKGIGGAGRPLHYKGSKFHRVIPSFMLQGGDFTHNNGMGGESIYGGRFADENFKLKHTRPGLLSMANAGRDTNGSQFFITTVVTSWLDGRHVVFGEVLEGMDVVKMIEGLGSDDGTVKKPVIIADSGELK 197
            MAFAKSLAFMLGMATFALSQADDLTKVTHKVFFDINVADKPAGRIVFGLYGNTVPRTVENFRALCTGEKGIGGAGRPLHYKGSKFHRVIPSFMLQGGDFTHNNGMGGESIYGGRFADENFKLKHTRPGLLSMANAGRDTNGSQFFITTVVTSWLDGRHVVFGEVLEGMDVVKMIEGLGSDDGTVKKPVIIADSGELK
Sbjct:    1 MAFAKSLAFMLGMATFALSQADDLTKVTHKVFFDINVADKPAGRIVFGLYGNTVPRTVENFRALCTGEKGIGGAGRPLHYKGSKFHRVIPSFMLQGGDFTHNNGMGGESIYGGRFADENFKLKHTRPGLLSMANAGRDTNGSQFFITTVVTSWLDGRHVVFGEVLEGMDVVKMIEGLGSDDGTVKKPVIIADSGELK 197          
BLAST of EWM25413.1 vs. NCBI_GenBank
Match: gi|210063564|gb|ACJ06541.1| (cyclophilin [Camellia oleifera])

HSP 1 Score: 289.656 bits (740), Expect = 3.328e-97
Identity = 144/200 (72.00%), Postives = 164/200 (82.00%), Query Frame = 0
Query:    2 AFAKSLAFMLGM-ATFALSQA----DDLTKVTHKVFFDINVADKPAGRIVFGLYGNTVPRTVENFRALCTGEKGIGGAGRPLHYKGSKFHRVIPSFMLQGGDFTHNNGMGGESIYGGRFADENFKLKHTRPGLLSMANAGRDTNGSQFFITTVVTSWLDGRHVVFGEVLEGMDVVKMIEGLGSDDGTVKKPVIIADSGEL 196
            +F+ +L + L + AT AL+QA    +DL +VTHKV+FD+ +A KPAGRIV GL+G  VP+T ENFRALCTGEKG+G +G+PLHYKGSKFHR+IPSFMLQGGDFT  +G GGESIYGG FADENFKLKHT PGLLSMANAG DTNGSQFFITTV TSWLDGRHVVFG+VL GMDVV  IE  G+  GT K  V IADSGEL
Sbjct:    6 SFSLALVWTLVLFATLALTQAKKSKEDLKEVTHKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMLQGGDFTLGDGRGGESIYGGEFADENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKIEAEGNQSGTPKSNVQIADSGEL 205          
BLAST of EWM25413.1 vs. NCBI_GenBank
Match: gi|703130515|ref|XP_010104628.1| (Peptidyl-prolyl cis-trans isomerase CYP19-4 [Morus notabilis] >gi|587913631|gb|EXC01434.1| Peptidyl-prolyl cis-trans isomerase CYP19-4 [Morus notabilis])

HSP 1 Score: 289.656 bits (740), Expect = 3.617e-97
Identity = 143/199 (71.86%), Postives = 162/199 (81.41%), Query Frame = 0
Query:    2 AFAKSLAFMLGMATFALSQA----DDLTKVTHKVFFDINVADKPAGRIVFGLYGNTVPRTVENFRALCTGEKGIGGAGRPLHYKGSKFHRVIPSFMLQGGDFTHNNGMGGESIYGGRFADENFKLKHTRPGLLSMANAGRDTNGSQFFITTVVTSWLDGRHVVFGEVLEGMDVVKMIEGLGSDDGTVKKPVIIADSGEL 196
            +F     F+LG  T AL+QA    +DL +VTHKV+FD+ +  KPAGRIV GL+G TVP+T ENFRALCTGEKGIG +G+PLHYKGS+FHR+IPSFMLQGGDFT  +G GGESIYG +FADENFKLKHT PGLLSMANAG+DTNGSQFFITTV TSWLDGRHVVFG+VL GMDVV  IE  G   GT K  V+IADSGEL
Sbjct:    6 SFLVCTLFLLG--TLALTQAKKSKEDLKEVTHKVYFDVEIDGKPAGRIVMGLFGKTVPKTAENFRALCTGEKGIGKSGKPLHYKGSQFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFADENFKLKHTGPGLLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKIEAEGRQSGTPKSKVVIADSGEL 202          
BLAST of EWM25413.1 vs. NCBI_GenBank
Match: gi|1040841020|ref|XP_017233879.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Daucus carota subsp. sativus] >gi|1021048761|gb|KZN06541.1| hypothetical protein DCAR_007378 [Daucus carota subsp. sativus])

HSP 1 Score: 287.345 bits (734), Expect = 3.046e-96
Identity = 143/200 (71.50%), Postives = 161/200 (80.50%), Query Frame = 0
Query:    3 FAKSLAFMLGM-ATFALSQAD-----DLTKVTHKVFFDINVADKPAGRIVFGLYGNTVPRTVENFRALCTGEKGIGGAGRPLHYKGSKFHRVIPSFMLQGGDFTHNNGMGGESIYGGRFADENFKLKHTRPGLLSMANAGRDTNGSQFFITTVVTSWLDGRHVVFGEVLEGMDVVKMIEGLGSDDGTVKKPVIIADSGEL 196
             A +L F L +  T ALSQA      DL +VT+KV+FD+ +A KPAGRIV GL+G TVP+T ENFRALCTGEKGIG +G+PLHYKGS FHR+IPSFMLQGGDFT  +G GGESIYG +FADENFK+KHT PGLLSMANAG+DTNGSQFFITTV TSWLDGRHVVFG+VL GMDVV  +E  G   GT K  VIIADSGEL
Sbjct:    7 IATTLLFSLVLLGTLALSQAKKKSGADLKEVTNKVYFDVEIAGKPAGRIVMGLFGKTVPKTAENFRALCTGEKGIGKSGKPLHYKGSAFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFADENFKIKHTGPGLLSMANAGKDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGQQSGTPKSKVIIADSGEL 206          
BLAST of EWM25413.1 vs. NCBI_GenBank
Match: gi|502129296|ref|XP_004500254.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Cicer arietinum])

HSP 1 Score: 286.574 bits (732), Expect = 4.445e-96
Identity = 139/186 (74.73%), Postives = 153/186 (82.26%), Query Frame = 0
Query:   15 TFALSQA----DDLTKVTHKVFFDINVADKPAGRIVFGLYGNTVPRTVENFRALCTGEKGIGGAGRPLHYKGSKFHRVIPSFMLQGGDFTHNNGMGGESIYGGRFADENFKLKHTRPGLLSMANAGRDTNGSQFFITTVVTSWLDGRHVVFGEVLEGMDVVKMIEGLGSDDGTVKKPVIIADSGEL 196
            T AL QA    +DL +VTHKV+FD+ +  K AGR+V GLYG TVP+T ENFRALCTGEKG G  G+PLHYKGS FHR+IPSFM+QGGDFTH NGMGGESIYG +FADENFKLKHT PGLLSMANAG DTNGSQFFITTV TSWLDGRHVVFG+VL GMDVV  IE  G+  GT K  V+IADSGEL
Sbjct:   17 TLALIQAKKSKEDLKEVTHKVYFDVEIDGKAAGRVVIGLYGKTVPKTAENFRALCTGEKGTGKNGKPLHYKGSSFHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKIEAEGNQSGTPKSKVVIADSGEL 202          
BLAST of EWM25413.1 vs. NCBI_GenBank
Match: gi|567210292|ref|XP_006410046.1| (hypothetical protein EUTSA_v10016970mg [Eutrema salsugineum] >gi|557111215|gb|ESQ51499.1| hypothetical protein EUTSA_v10016970mg [Eutrema salsugineum])

HSP 1 Score: 290.812 bits (743), Expect = 4.749e-96
Identity = 141/199 (70.85%), Postives = 162/199 (81.41%), Query Frame = 0
Query:    1 MAFAKS--LAFMLGMATFALSQA-DDLTKVTHKVFFDINVADKPAGRIVFGLYGNTVPRTVENFRALCTGEKGIGGAGRPLHYKGSKFHRVIPSFMLQGGDFTHNNGMGGESIYGGRFADENFKLKHTRPGLLSMANAGRDTNGSQFFITTVVTSWLDGRHVVFGEVLEGMDVVKMIEGLGSDDGTVKKPVIIADSGEL 196
            MA A S  L  +L  A  A  QA +DL ++THKV+FD+ +  K AGR+V GL+G TVP+T ENFRALCTGEKG+G +G+PLHYKGSKFHR+IPSFM+QGGDFTH NGMGGESIYG +FADENFKLKHT PGLLSMAN+G DTNGSQFFITTV TSWLDGRHVVFG+V++GMDVV  IE  G   GT K  V+IADSGEL
Sbjct:  113 MAKASSILLGTLLLFAALAFIQAKEDLKEITHKVYFDVEIEGKDAGRVVIGLFGKTVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGLLSMANSGEDTNGSQFFITTVKTSWLDGRHVVFGKVVQGMDVVYKIEAEGKQSGTPKSKVVIADSGEL 311          
BLAST of EWM25413.1 vs. NCBI_GenBank
Match: gi|595829673|ref|XP_007205916.1| (peptidyl-prolyl cis-trans isomerase CYP19-4 [Prunus persica] >gi|1139765150|gb|ONH99912.1| hypothetical protein PRUPE_6G057200 [Prunus persica])

HSP 1 Score: 286.189 bits (731), Expect = 6.040e-96
Identity = 141/201 (70.15%), Postives = 164/201 (81.59%), Query Frame = 0
Query:    4 AKSLAFMLG----MATFALSQA----DDLTKVTHKVFFDINVADKPAGRIVFGLYGNTVPRTVENFRALCTGEKGIGGAGRPLHYKGSKFHRVIPSFMLQGGDFTHNNGMGGESIYGGRFADENFKLKHTRPGLLSMANAGRDTNGSQFFITTVVTSWLDGRHVVFGEVLEGMDVVKMIEGLGSDDGTVKKPVIIADSGEL 196
            A++ +F+L       T AL QA    +DL +VTHKVFFD+ +A KPAGR+V GL+G TVP+T ENFRALCTGEKGIG +G+PLH+KGSKFHR+IPSFM+QGGDFT  +G GGESIYG +FADENFKLKHT PGLLSMANAG DTNGSQFFITTV T+WLDGRHVVFG+VL GMDVV  IE  G+ +GT K  V+IADSGEL
Sbjct:    2 ARTTSFLLCTLVLFGTLALIQAKKSKEDLKEVTHKVFFDVEIAGKPAGRVVIGLFGKTVPKTAENFRALCTGEKGIGKSGKPLHFKGSKFHRIIPSFMIQGGDFTLGDGRGGESIYGEKFADENFKLKHTGPGLLSMANAGSDTNGSQFFITTVTTNWLDGRHVVFGKVLSGMDVVYKIEAEGNQNGTPKSKVVIADSGEL 202          
BLAST of EWM25413.1 vs. NCBI_GenBank
Match: gi|388501820|gb|AFK38976.1| (unknown [Lotus japonicus])

HSP 1 Score: 285.804 bits (730), Expect = 8.960e-96
Identity = 141/194 (72.68%), Postives = 156/194 (80.41%), Query Frame = 0
Query:    7 LAFMLGMATFALSQA----DDLTKVTHKVFFDINVADKPAGRIVFGLYGNTVPRTVENFRALCTGEKGIGGAGRPLHYKGSKFHRVIPSFMLQGGDFTHNNGMGGESIYGGRFADENFKLKHTRPGLLSMANAGRDTNGSQFFITTVVTSWLDGRHVVFGEVLEGMDVVKMIEGLGSDDGTVKKPVIIADSGEL 196
            L  +L  AT AL QA    +DL +VTHKVFFD+ +  K AGRIV GLYG TVP T ENFRALCTGEKGIG +G+PLH+KGS FHR+IPSFM+QGGDFT  NGMGGESIYG +F DENFKLKHT PGLLSMANAG DTNGSQFFITTV TSWLDGRHVVFG+VL GMDVV  +E  G+  GT K  V+IADSGEL
Sbjct:    9 LCTVLLFATLALIQAKKSKEDLKEVTHKVFFDVEIDGKAAGRIVMGLYGKTVPETAENFRALCTGEKGIGKSGKPLHFKGSSFHRIIPSFMIQGGDFTQGNGMGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKMEAEGNQSGTPKSKVVIADSGEL 202          
BLAST of EWM25413.1 vs. NCBI_GenBank
Match: gi|1117535137|ref|XP_019447015.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Lupinus angustifolius] >gi|1102710733|gb|OIW09540.1| hypothetical protein TanjilG_30859 [Lupinus angustifolius])

HSP 1 Score: 285.804 bits (730), Expect = 9.569e-96
Identity = 140/194 (72.16%), Postives = 156/194 (80.41%), Query Frame = 0
Query:    7 LAFMLGMATFALSQA----DDLTKVTHKVFFDINVADKPAGRIVFGLYGNTVPRTVENFRALCTGEKGIGGAGRPLHYKGSKFHRVIPSFMLQGGDFTHNNGMGGESIYGGRFADENFKLKHTRPGLLSMANAGRDTNGSQFFITTVVTSWLDGRHVVFGEVLEGMDVVKMIEGLGSDDGTVKKPVIIADSGEL 196
            L  +L + T AL QA    +DL +VT+KV+FD+ +  K AGRIV GLYG TVP+T ENFRALCTGEKG G +G+PLHYKGS FHR+IPSFMLQGGDFTH NGMGGESIYG +F DENFKLKHT PGLLSMANAG DTNGSQFFITTV TSWLDGRHVVFG+VL GMDVV  IE  G+  GT K  V+I DSGEL
Sbjct:    9 LCAILLIGTLALVQAKKSKEDLKEVTNKVYFDVEINGKSAGRIVIGLYGKTVPKTAENFRALCTGEKGTGKSGKPLHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFPDENFKLKHTGPGLLSMANAGSDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKIEAEGNQSGTPKSKVVIVDSGEL 202          
BLAST of EWM25413.1 vs. NCBI_GenBank
Match: gi|727457037|ref|XP_010510426.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Camelina sativa])

HSP 1 Score: 286.96 bits (733), Expect = 1.024e-95
Identity = 137/199 (68.84%), Postives = 160/199 (80.40%), Query Frame = 0
Query:    1 MAFAKSLAF---MLGMATFALSQADDLTKVTHKVFFDINVADKPAGRIVFGLYGNTVPRTVENFRALCTGEKGIGGAGRPLHYKGSKFHRVIPSFMLQGGDFTHNNGMGGESIYGGRFADENFKLKHTRPGLLSMANAGRDTNGSQFFITTVVTSWLDGRHVVFGEVLEGMDVVKMIEGLGSDDGTVKKPVIIADSGEL 196
            MA A S+ F   +L  A  ++   +DL ++THKV+FD+ +  K AGR+V GL+G  VP+T ENFRALCTGEKG+G +G+PLHYKGSKFHR+IPSFM+QGGDFTH NGMGGESIYG +FADENFKLKHT PGLLSMAN+G DTNGSQFFITTV TSWLDGRHVVFG+V +GMDVV  IE  G   GT K  V+IADSGEL
Sbjct:   32 MARASSILFGTLLLLGAVASIEAKEDLKEITHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGLLSMANSGEDTNGSQFFITTVKTSWLDGRHVVFGKVEQGMDVVYKIEAEGKQSGTPKSKVVIADSGEL 230          
The following BLAST results are available for this feature:
BLAST of EWM25413.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107174|gb|EWM25413.1|4.686e-142100.00cyclophilin [Nannochloropsis gaditana][more]
gi|210063564|gb|ACJ06541.1|3.328e-9772.00cyclophilin [Camellia oleifera][more]
gi|703130515|ref|XP_010104628.1|3.617e-9771.86Peptidyl-prolyl cis-trans isomerase CYP19-4 [Morus... [more]
gi|1040841020|ref|XP_017233879.1|3.046e-9671.50PREDICTED: peptidyl-prolyl cis-trans isomerase CYP... [more]
gi|502129296|ref|XP_004500254.1|4.445e-9674.73PREDICTED: peptidyl-prolyl cis-trans isomerase CYP... [more]
gi|567210292|ref|XP_006410046.1|4.749e-9670.85hypothetical protein EUTSA_v10016970mg [Eutrema sa... [more]
gi|595829673|ref|XP_007205916.1|6.040e-9670.15peptidyl-prolyl cis-trans isomerase CYP19-4 [Prunu... [more]
gi|388501820|gb|AFK38976.1|8.960e-9672.68unknown [Lotus japonicus][more]
gi|1117535137|ref|XP_019447015.1|9.569e-9672.16PREDICTED: peptidyl-prolyl cis-trans isomerase CYP... [more]
gi|727457037|ref|XP_010510426.1|1.024e-9568.84PREDICTED: peptidyl-prolyl cis-trans isomerase CYP... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5229rna5229Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications