rna5227, rna5227 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5227
Unique Name	rna5227
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2077
Alignment location	CM002465.1:475871..477589 -

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Properties


Property Name	Value
Product	rna family
Orig transcript id	gnl\|cribi\|Naga_100005g14.6739.mrna
Orig protein id	gnl\|cribi\|Naga_100005g14.6739
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:475871..477589 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100005g14	gene5047	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25445.1	cds5214	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5227	rna5227-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:475871..477589-
coding sequence from alignment at CM002465.1:475871..477589-

mRNA sequence

>rna5227 ID=rna5227|Name=rna5227|organism=Nannochloropsis gaditana|type=mRNA|length=2077bp
CTGGGACCAGGACTACCCCTTTTGGCACTCCGATACAAATTTGGCGAGAT
CCTCGTGGCGCATTCATGGCTAGCTTTCGAGCAAAACTATTGCTCAAAAC
CTTCCTTGGCCGGCTGCTTGTCGGCGCCTGCGAGTGAGCGTCAGGGTCAG
GTGGTAATATGCCCGCTTCGCAAGACTCGCACGCATGGCACTCTTTTTAA
AACCCGGCGAAGGAAAATTTGCGTTTAAAATTTTCACATTTTCCTACCAC
TGTGATTATTTCCCTGTAGTCGCGAGCGTCACCCAGACACGAATTCTTTG
GAAAGCGCTGGAGAGCTTGTCACCTAGAGAAAAGTGATGCCGACTTTCCT
CCCCCAGTTGCTGACTGTGTTTGCGCTTACTTCTGGCGTAAATGCAGGTA
GAAATGTAAACTACCTGCAAGCTGCACTTGATGATGAAATTACAGACCTG
CCCGGCCTGGAATACATGCCAGCCTTCCGTCACTTCTCAGGCTACATCGA
CATCCCTGGCATCGCGCCCAACGCCACCAAGCACGTGCACTACCACTTCA
TCGAGTCCGAGAGCGCCCCCGAAAAGGACCCTGTCGTGTGGTGGACCAAC
GGAGGTCCAGGATGCAGTGGTCTTTTGGGTCTTTTCACGGAGCAGGGTCC
CTTTAAGCCCAACGCGGAGGGCATCCTCGAGCAAAACGCCTATCGCTGGA
ACAAGGTGGCAAACATGCTGTTCGTGGAACAACCAGTTGGCGTTGGTTTC
TCTTTCAGTGACGATCCAATGCACGACTACGAGCTCGGAGATCGACAAGC
CGCCAAAGACAACTACGAGTTTATCCTGGGGTTTTTCCATAAGTTCCCTC
AGTACTTGTCCAATGAATTCGTCATTTCAAGCGAGAGCTGGGGTGGGCAC
TATATACCCACGCTCTCCGTGGAAATTGTTCGTCAACAGGGTCGACCCGG
CGCCTCGCCGAAGCTCAATTTCGTGGGCTTTCTCGTCGGCAACCCCTACA
CAAGCTGGATGAATAACCACCAGGCAACGGTGAAAGCCCTCGTCGGGCAC
TCACTCGTTTCGTATCCCACTGCCGCCGCCTGGGAAAGGCAGTGTGCACA
CATCCGCATCGCCCCAGAGTACCTCCTGACCGACTGCATCGAATTGGAGG
CGCGGATGAACGTGGAAATGGCGGAGGTCAATCCTTATGCGCTTTCCTAT
CCCGTTTGTCTGGACACAGTGCCCAATGCTCGCCTCTCTAAGCGCGGCCG
TGCTCAGCGCACTTGGCTGCTCCACCACGCCTCGCCGCCTGAGGTTAGGG
AACGCATGGCGCAGGTGGGGGTGGGCATCATCGATATTGCGGACTACGAG
CCCTGCGAAGATAACTACCTTGTGAAGTATCTCAATCAGGAGGCGGTGAA
GGTGGCCATGCATGTCGACCCAGGCATTGAGTGGAAGGAGTGCTCCAGCC
TGCTCAACTACGATCTCCGCGACTTCTTCGCACCCATGGAGCCCCTTTAC
AAGCTCTTGCTGGGGGGAAAGTACGGATTGAAAATGCTTGTGTACAGCGG
GGACGACGATTCCGTGTGTGGGACCTGGGGCACGCAGAAGTGGATGCACG
GCCTGGGCCAGAGGGTCCTGAGGGCTTGGGTGCCCTGGCGCGACGATGAG
GGGCAGGTGGCGGGCTTTGTGACGCAGTTTGGAGGCAATCTGACACTGGC
CACGGTCGCAGGCGCGGGCCATGAGGTCCCAACGTACACACCGGACACAG
CTTTGAAGCTCTTTATGCTCTTCCTGGATGGCACGTGGTTCGATCCCAAG
GCGTTCAGCCCCTCCGAGGAGGGAGACGGGGGGAAAGGAATGGGATTGAA
GGGGGCCGGGGAAAAGGAAAAGGAGGAGGGAATGGCGGCGAAGGGTAATG
AAAGGGAGGTGTCGCAGGTCGCAGTCAAGACCTTACTTCGCGTTATGTAA
ATATAATCATAGCGATTGAAGAAAGATGGACTCATCCCTCCCTGAAATAA
ATAAAAAGATAAGGCTCTGCCTTTTTTGCCCTGTCATGAGAAAGATCAAA
GAATATTCCGAAAAGAGTCGCCTATCT

protein sequence of rna5227

>rna5227-protein ID=rna5227-protein|Name=rna5227|organism=Nannochloropsis gaditana|type=polypeptide|length=566bp
MCRPTRQDKLHPRASKMAFVLLLIRNTIGRRVASDSFSPSAGFSCQSPVS
TFVRAGSCIGSYLPARYSLGRGGSTIRYLTEDEEGGMILSKGTRSVVTGS
KQRRGRKSKPWQGPFAYHEELELTVESLTNLGWGICRASLPSVPDAQSPE
MPLPTPSTPGGPRESPEGWVVMVPGVIPGERIRLRIYRNHKNYSEADLMH
VLESSPERVEPACPLFGTCGGCQYQHMSVAAQRAWKREHVLQVLARTGNV
TGVAVQETIGTEHTLGYRSKITPHHEKPRGGEIREIGFLKLGSRALVDVP
ECAIATPAINARLRGLREEVRVTARAAAVAETPRKPKGATLLLRETREGV
VTDPRAEVSDQVGGLLFKYTAGSFFQNNPYVLPHMVEYVVRKAGAPNVRY
LVDAYCGGGLFCLSASKNFEACYGVEISELAILSAQRNAELNKIGNCHFQ
AGDATDIFAGIGHISGADTVTILDPPRKGCDEGFLTQLCRFRPARIVYVS
CDPATQARDARFLLERGYDIEEVQPFDLFPQTRHIENVIVFVEAHRTGAG
AGPVPPWAGEGGTASL

mRNA from alignment at CM002465.1:475871..477589-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5227 ID=rna5227|Name=rna5227|organism=Nannochloropsis gaditana|type=mRNA|length=1719bp|location=Sequence derived from alignment at CM002465.1:475871..477589- (Nannochloropsis gaditana)
GAAGGAGCCATCAGAGGAATGTGCAGGCCCACTAGGCAAGATAAGCTACA
TCCGCGTGCTAGTAAAATGGCCTTCGTCCTTCTTTTAATAAGAAATACAA
TAGGAAGAAGGGTTGCAAGCGATTCGTTTTCGCCATCAGCTGGTTTTTCA
TGTCAAAGTCCTGTATCTACATTCGTCCGCGCCGGCTCTTGCATTGGCTC
CTACCTACCCGCGAGGTACTCGCTTGGGCGTGGCGGATCGACCATAAGAT
ATCTCACTGAGGATGAGGAGGGAGGCATGATTTTGTCGAAAGGAACGAGA
TCAGTCGTGACAGGATCGAAGCAGAGGAGAGGCCGCAAATCCAAGCCGTG
GCAGGGTCCGTTTGCTTACCATGAGGAGCTGGAACTCACAGTGGAAAGCC
TGACTAACCTTGGTTGGGGGATCTGTCGTGCATCGTTACCTAGTGTACCG
GATGCACAATCCCCCGAAATGCCATTGCCAACGCCTTCTACACCGGGCGG
GCCGAGAGAGAGCCCGGAAGGTTGGGTGGTGATGGTACCGGGAGTGATTC
CCGGCGAGCGAATCCGGCTCCGGATCTATCGCAACCACAAAAACTACTCC
GAGGCAGACTTGATGCATGTGCTTGAGAGTTCGCCTGAGCGCGTCGAACC
CGCGTGCCCTCTCTTCGGCACGTGCGGCGGGTGTCAGTATCAGCACATGA
GCGTTGCGGCCCAGCGAGCCTGGAAACGCGAGCACGTGCTCCAGGTGCTG
GCGCGGACAGGAAACGTGACGGGGGTGGCCGTGCAGGAAACGATAGGGAC
GGAGCATACCCTTGGATACCGGTCCAAGATCACGCCGCATCACGAAAAGC
CGCGAGGGGGGGAGATCCGCGAGATCGGCTTCCTGAAACTCGGGTCTCGG
GCCCTGGTCGACGTGCCAGAGTGCGCCATCGCCACCCCGGCGATCAATGC
CCGCTTGCGCGGACTGCGAGAGGAGGTGCGGGTGACGGCCAGGGCAGCTG
CAGTTGCTGAGACGCCGAGGAAACCGAAAGGGGCGACTTTGCTGCTCCGG
GAGACTCGGGAGGGGGTGGTCACGGACCCGCGGGCAGAGGTCTCGGACCA
GGTGGGGGGCCTCCTCTTCAAGTACACTGCGGGGAGCTTCTTCCAAAACA
ACCCGTATGTATTGCCGCATATGGTTGAATATGTGGTGCGCAAGGCCGGG
GCGCCCAATGTCCGCTACCTGGTGGACGCGTACTGCGGGGGCGGTCTCTT
CTGCCTCTCGGCGAGCAAAAACTTCGAGGCGTGCTACGGCGTGGAAATTA
GCGAGTTGGCCATATTGAGCGCTCAGAGAAACGCGGAGCTGAACAAGATT
GGGAACTGTCACTTCCAGGCGGGGGACGCGACGGACATCTTCGCCGGCAT
CGGCCACATTTCCGGAGCGGACACGGTGACGATCCTCGACCCCCCCCGCA
AGGGCTGCGATGAGGGCTTCTTGACGCAGCTCTGTAGATTTCGCCCAGCC
CGTATTGTGTACGTGAGCTGTGACCCCGCGACACAGGCCAGGGACGCCCG
CTTCCTCCTAGAGCGCGGCTATGACATCGAGGAGGTGCAGCCCTTCGACC
TCTTTCCGCAGACGCGACACATCGAGAACGTCATTGTTTTTGTTGAGGCT
CACCGCACGGGTGCCGGAGCCGGACCCGTGCCTCCCTGGGCCGGTGAAGG
GGGAACAGCGAGCTTATAA

Coding sequence (CDS) from alignment at CM002465.1:475871..477589-

>rna5227 ID=rna5227|Name=rna5227|organism=Nannochloropsis gaditana|type=CDS|length=1701bp|location=Sequence derived from alignment at CM002465.1:475871..477589- (Nannochloropsis gaditana)
ATGTGCAGGCCCACTAGGCAAGATAAGCTACATCCGCGTGCTAGTAAAAT
GGCCTTCGTCCTTCTTTTAATAAGAAATACAATAGGAAGAAGGGTTGCAA
GCGATTCGTTTTCGCCATCAGCTGGTTTTTCATGTCAAAGTCCTGTATCT
ACATTCGTCCGCGCCGGCTCTTGCATTGGCTCCTACCTACCCGCGAGGTA
CTCGCTTGGGCGTGGCGGATCGACCATAAGATATCTCACTGAGGATGAGG
AGGGAGGCATGATTTTGTCGAAAGGAACGAGATCAGTCGTGACAGGATCG
AAGCAGAGGAGAGGCCGCAAATCCAAGCCGTGGCAGGGTCCGTTTGCTTA
CCATGAGGAGCTGGAACTCACAGTGGAAAGCCTGACTAACCTTGGTTGGG
GGATCTGTCGTGCATCGTTACCTAGTGTACCGGATGCACAATCCCCCGAA
ATGCCATTGCCAACGCCTTCTACACCGGGCGGGCCGAGAGAGAGCCCGGA
AGGTTGGGTGGTGATGGTACCGGGAGTGATTCCCGGCGAGCGAATCCGGC
TCCGGATCTATCGCAACCACAAAAACTACTCCGAGGCAGACTTGATGCAT
GTGCTTGAGAGTTCGCCTGAGCGCGTCGAACCCGCGTGCCCTCTCTTCGG
CACGTGCGGCGGGTGTCAGTATCAGCACATGAGCGTTGCGGCCCAGCGAG
CCTGGAAACGCGAGCACGTGCTCCAGGTGCTGGCGCGGACAGGAAACGTG
ACGGGGGTGGCCGTGCAGGAAACGATAGGGACGGAGCATACCCTTGGATA
CCGGTCCAAGATCACGCCGCATCACGAAAAGCCGCGAGGGGGGGAGATCC
GCGAGATCGGCTTCCTGAAACTCGGGTCTCGGGCCCTGGTCGACGTGCCA
GAGTGCGCCATCGCCACCCCGGCGATCAATGCCCGCTTGCGCGGACTGCG
AGAGGAGGTGCGGGTGACGGCCAGGGCAGCTGCAGTTGCTGAGACGCCGA
GGAAACCGAAAGGGGCGACTTTGCTGCTCCGGGAGACTCGGGAGGGGGTG
GTCACGGACCCGCGGGCAGAGGTCTCGGACCAGGTGGGGGGCCTCCTCTT
CAAGTACACTGCGGGGAGCTTCTTCCAAAACAACCCGTATGTATTGCCGC
ATATGGTTGAATATGTGGTGCGCAAGGCCGGGGCGCCCAATGTCCGCTAC
CTGGTGGACGCGTACTGCGGGGGCGGTCTCTTCTGCCTCTCGGCGAGCAA
AAACTTCGAGGCGTGCTACGGCGTGGAAATTAGCGAGTTGGCCATATTGA
GCGCTCAGAGAAACGCGGAGCTGAACAAGATTGGGAACTGTCACTTCCAG
GCGGGGGACGCGACGGACATCTTCGCCGGCATCGGCCACATTTCCGGAGC
GGACACGGTGACGATCCTCGACCCCCCCCGCAAGGGCTGCGATGAGGGCT
TCTTGACGCAGCTCTGTAGATTTCGCCCAGCCCGTATTGTGTACGTGAGC
TGTGACCCCGCGACACAGGCCAGGGACGCCCGCTTCCTCCTAGAGCGCGG
CTATGACATCGAGGAGGTGCAGCCCTTCGACCTCTTTCCGCAGACGCGAC
ACATCGAGAACGTCATTGTTTTTGTTGAGGCTCACCGCACGGGTGCCGGA
GCCGGACCCGTGCCTCCCTGGGCCGGTGAAGGGGGAACAGCGAGCTTATA
A

Synonyms

Publications