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Properties
| Property Name | Value |
|---|
| Product | dna topoisomerase 6 subunit a |
| Orig transcript id | gnl|cribi|Naga_100005g11.6700.mrna |
| Orig protein id | gnl|cribi|Naga_100005g11.6700 |
| Gene | TOP6A |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:468627..470721 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5224 ID=rna5224|Name=rna5224|organism=Nannochloropsis gaditana|type=mRNA|length=1629bp
CTTGGATATCTTGACTCAGTCCGTCCACTAGATGCACTTGGGGATCCGGC
GCTGATGTCAATTAGAGCTGTAGAGCCGCGCCGGAATTGCGTACATCTTT
CTAAGCCCTTTTTTAATGCAGAGCGTGAATAAGTGTGGTGTCGATGACCT
GATCGGATGTCATATGTGCTCTTCCAACTACAAAATCGTCACTCCACCTC
AAGTGCAACAGACTGCTCCAACACGACTCACCTTCCACGTTGATAATTTC
ACCGCGCAGGTTTCGCAGTAATTAAAAAAAAGAAGATATGGCACGGCTAC
TTTTCGCAACATCCTCGGTTCTGCTGCTTCAGGCAGCCCTGGGCTTTATG
CCTGCAAGCAAGTTGGCTCCAGCACCACGCACTGCAGCTCGCACTTCCGT
CCCGAGCCGCTCTGGCCTCCGAATGGCTGCCACGGCAGAGGAGTACAAAG
CTTGCTATGTGGACTTACTCGAGACCGTGGATAAGGCTAACTGCGCTCCT
ATAGTGGTACGCCTGGCCTGGCACGACGCGGGTACCTTCAACAAGGCCAA
CGCAGACAAGCCCTTCCCCGACCGCGGGGGCGCTAACGGGTCCATCCGAT
TTGATCCCGAGCTCGCGCACGGGGCCAACGCCGGCCTGGGCCTCGCCCTT
AAGCTCCTGGAGCCGGTCAAGAAGAGGCACCCTAACGTGGGCTGGGCGGA
CCTGATGCAGGCAGCATCCGCAGCAGGCATCGAGGCCACTGGCGGCCCGC
GCATCCCCATGCGTTACGGCCGGAAAGACGCTGCGGGCCCCGAGGACTGC
CCCAAAGAGGGCAACTTGCCCGGTGCCAACATCCCGGGTCAACAAACGGG
CCCCTTCCCGGACGGTACCCCCACCCCCGCCGACCACCTGCGCAAGGTCT
TCCACCGGATGGGCCTCTCGGACCAGGACATCGTGGCGCTGTCGGGGGCA
CACACGCTGGGGCGGGCCTACAAGGACCGCTCGGGCCTGGGAAAGGAGTC
GACCAAGTTCACGGAGGGGGACGCGGCGCCTCGCGGGGACGGCGCCAAGG
GCTACGGGCGAAAGGGCGGGCAACCCTGGACAGAGAAATGGCTGAAATTC
GACAACTCCTACTTCGCGACCATGTACGACCCGAACGCGGACCCGGAGCT
CCTCAAATTGGACACTGACCTGTGCATTTTCGGCGACGAGGGATTCCGCC
CCCACTCCATGAAGTACAAGGACGACCAGGACGCTTTTTTCAAGGACTAC
TGCGTCTCCCACGCCAAGCTCTCCGAGCTGGGGGTGGAGTGGGAGGTCCC
TGGGGGCGTGACTTTCTAGAGAGGACGCTCGTGTCTGGGGCTTCGGAGTG
CGGAAGAGTGGCTCCGCCATGACCTTGGAGGCAAGTAGAGTGGCAGGGAA
AAAGATGCGGCATCGTTGTTCAAAGACGGGCGCGAGGCTGCTTAGGACTG
ACTGACTGAGAGGGGAGGACAGGACCACACTCGCATGATTTTTATTGAGA
TGCTGATTGATAGGAGCCATGAAAGAGAGACAAAAGAGTCCGGGAGAAAT
GGCCCGAGGCTTCTGGAGCCCGGCCCTGGGAGAGTAATGACGGAACAAAA
AATCATTTCAGGCTCCTACGCCGACGAGA back to topprotein sequence of rna5224 >rna5224-protein ID=rna5224-protein|Name=rna5224|organism=Nannochloropsis gaditana|type=polypeptide|length=573bp
MVRRRSVKDDTSSEEEEEEEVSSSDEEDEDSDFSPWEATTRKGKKITKAA
PEQSIARSHTAATLTSSASKKKSPSQPRSLGKKEGKRGGGHGTVPRKAAA
ARTGTTSPGTLAGRKRRKLEREEDDEEEGKEEDEAKEVYDEDEEEDDDDE
PEGKSRGGSTRRMTGKNQRKTKGLNVTGVGNSKVDKVLEEVRQLMLRSRR
DDAPNPTLADLGITTVREVSDMAPEGVLFEIEKTILAAAGMILRGEGFSY
QVPTRSATNQLYIAELDRIVLSDKVATRAFLNPREVRKTAITTRIMQLVH
EVLSKGIHITKRDMFYTDVKLFRDQKDSDVVLDDVACMLGCTRSCLNVVA
SEKGLVVGRVQFEEDGDFIDCTRMGVGGKAIPPYVDKIACIQSDAKFILL
VEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKTELHIPVL
GLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYGI
PPQCRLDMTDHDMRTGRQLLQEDFIQKNPEWVKELQLMLKMKKKAEIQAL
SAFGFQYITEDYLPRKLEKGDWI back to topmRNA from alignment at CM002465.1:468627..470721+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5224 ID=rna5224|Name=rna5224|organism=Nannochloropsis gaditana|type=mRNA|length=2095bp|location=Sequence derived from alignment at CM002465.1:468627..470721+ (Nannochloropsis gaditana)
CCTCCCACACTTACACTCCGACACCCGCTCTCAGGCACAGCGTTTGGGAC
AAGAGCCTGTGCCTGGTGTAATTATGGTGCGGCGCAGGAGCGTCAAGGAT
GACACCTCAtctgaagaggaggaggaggaggaggtatcATCGTCcgatga
ggaagatgaagacaGTGATTTTTCCCCTTGGGAGGCCACtacaaggaaag
ggaagaagattACCAAAGCTGCGCCCGAGCAATCCATTGCAAGGAGTCAT
ACCGCTGCTACACTGACGTCCTCGgcgtcgaagaagaagagcccgAGCCA
ACCACGCAGTcttggaaaaaaagaggggaagagaggaggagggcacggGA
CGGTCCCCCGAAAAGCTGCTGCAGCCAGAACAGGTACCACATCTCCTGGT
ACCCTAGCAGGCCGAAAACGGAGAAAgttggaaagagaggaagatgatga
agaggaagggaaggaggaagacgaggcaaaagaagtgtacgatgaggatg
aggaggaagatgacgaCGACGAACCAGAAGGTAAAAGCCGAGGAGGCagc
acgaggaggatgaccggAAAGAATCAACGCAAGACCAAGGGCTTAAATGT
CACCGGTGTTGGAAATAGCAAGGTGGACaaggtcttggaggaggtgcgtc
AATTAATGCTGCGGTCCCGGCGGGACGACGCCCCCAACCCGACGCTGGCA
GACCTGGGAATTACCACGGTGCGAGAGGTGTCGGATATGGCGCCAGAGGG
AGTGCTCTTCGAAATCGAAAAGACAATACTCGCGGCGGCAGGCATGATTC
TGCGCGGAGAGGGCTTCTCGTACCAGGTACCGACCCGGTCGGCCACGAAC
CAGCTCTACATTGCCGAGCTGGACCGCATCGTCTTGTCCGACAAAGTCGC
CACCCGGGCCTTCTTGAACCCGCGAGAGGTCAGAAAGACGGCCATCACGA
CGCGGATAATGCAGCTGGTGCACGAAGTGCTGAGCAAGGGGATCCACATC
ACCAAGCGGGACATGTTTTACACGGACGTGAAGCTGTTCCGGGACCAGAA
GGATTCCGACGTGGTGCTCGACGACGTGGCATGCATGCTCGGGTGCACGC
GCTCCTGCCTGAACGTGGTCGCCTCGGAGAAGGGCCTGGTCGTGGGCCGC
GTCCAgttcgaggaggatggcgacTTCATCGACTGCACGCgcatgggggt
ggggggcaaGGCCATCCCGCCCTACGTTGACAAGATCGCGTGCATCCAGA
GCGACGCCAagttcatcctcctcgtcgagaaagaggcggcCTACATGCGC
CTGGCAGAGGACCGCTTCTACAACAAGTACCCCTGCATCGTCATCACGGC
CAAGGGCCAGCCCGACGTGGCCACCAGACTCTTCCTGAAGAAGCTCAAGA
CAGAGCTGCATATTCCGGTCCTGGGTTTGGTCGACTCCGATCCCTACGGC
CTGAAGATCCTCTCCGTCTACATGACAGGCTCCAAAAATATGTCCTACGA
TTCGGCCTCGCTCACGACGTCGGACATCAAGTGGCTGGGAGTGCGGCCGT
CCGACCTGGACAAGTACGGGATCCCGCCCCAGTGCCGTCTGGATATGACG
GATCACGATATGCGCACAGGACGCCAGCTCCTTCAGGAGGATTTCATCCA
GAAGAACCCAGAATGGGTCAAGGAGTTGCAGCTGATgctgaagatgaaga
aaaaggctGAGATACAGGCCTTGTCCGCCTTTGGTTTCCAATACATCACG
GAGGACTACTTGCCTCGGAAactggagaagggggatTGGATTTAGCTCAT
TATGGTGACAACATGCGACTATGTACAGTCGACCGCGGGGGGCCAGGTTG
CAGGCTTAAAGGGCTCTGTAACGTGAAGATATGAGCAATAAGGCGTTGGG
TATGACCGAGGAAGTACACGTGATGTAAAGAAGCACCTcgagacgaagag
gaacCCAGGACCTCTGACCAACTACATGACGACAGCTTGTGTAGCGATGA
GAAACAGTGATGAAATCCAGCGACGGAACTGAGTACTCCGTACCGTGAGA
CAGCATGtttccatttcttcttttaGCCCACAATTTGACCATTCC back to topCoding sequence (CDS) from alignment at CM002465.1:468627..470721+ >rna5224 ID=rna5224|Name=rna5224|organism=Nannochloropsis gaditana|type=CDS|length=1722bp|location=Sequence derived from alignment at CM002465.1:468627..470721+ (Nannochloropsis gaditana)
ATGGTGCGGCGCAGGAGCGTCAAGGATGACACCTCAtctgaagaggagga
ggaggaggaggtatcATCGTCcgatgaggaagatgaagacaGTGATTTTT
CCCCTTGGGAGGCCACtacaaggaaagggaagaagattACCAAAGCTGCG
CCCGAGCAATCCATTGCAAGGAGTCATACCGCTGCTACACTGACGTCCTC
GgcgtcgaagaagaagagcccgAGCCAACCACGCAGTcttggaaaaaaag
aggggaagagaggaggagggcacggGACGGTCCCCCGAAAAGCTGCTGCA
GCCAGAACAGGTACCACATCTCCTGGTACCCTAGCAGGCCGAAAACGGAG
AAAgttggaaagagaggaagatgatgaagaggaagggaaggaggaagacg
aggcaaaagaagtgtacgatgaggatgaggaggaagatgacgaCGACGAA
CCAGAAGGTAAAAGCCGAGGAGGCagcacgaggaggatgaccggAAAGAA
TCAACGCAAGACCAAGGGCTTAAATGTCACCGGTGTTGGAAATAGCAAGG
TGGACaaggtcttggaggaggtgcgtcAATTAATGCTGCGGTCCCGGCGG
GACGACGCCCCCAACCCGACGCTGGCAGACCTGGGAATTACCACGGTGCG
AGAGGTGTCGGATATGGCGCCAGAGGGAGTGCTCTTCGAAATCGAAAAGA
CAATACTCGCGGCGGCAGGCATGATTCTGCGCGGAGAGGGCTTCTCGTAC
CAGGTACCGACCCGGTCGGCCACGAACCAGCTCTACATTGCCGAGCTGGA
CCGCATCGTCTTGTCCGACAAAGTCGCCACCCGGGCCTTCTTGAACCCGC
GAGAGGTCAGAAAGACGGCCATCACGACGCGGATAATGCAGCTGGTGCAC
GAAGTGCTGAGCAAGGGGATCCACATCACCAAGCGGGACATGTTTTACAC
GGACGTGAAGCTGTTCCGGGACCAGAAGGATTCCGACGTGGTGCTCGACG
ACGTGGCATGCATGCTCGGGTGCACGCGCTCCTGCCTGAACGTGGTCGCC
TCGGAGAAGGGCCTGGTCGTGGGCCGCGTCCAgttcgaggaggatggcga
cTTCATCGACTGCACGCgcatgggggtggggggcaaGGCCATCCCGCCCT
ACGTTGACAAGATCGCGTGCATCCAGAGCGACGCCAagttcatcctcctc
gtcgagaaagaggcggcCTACATGCGCCTGGCAGAGGACCGCTTCTACAA
CAAGTACCCCTGCATCGTCATCACGGCCAAGGGCCAGCCCGACGTGGCCA
CCAGACTCTTCCTGAAGAAGCTCAAGACAGAGCTGCATATTCCGGTCCTG
GGTTTGGTCGACTCCGATCCCTACGGCCTGAAGATCCTCTCCGTCTACAT
GACAGGCTCCAAAAATATGTCCTACGATTCGGCCTCGCTCACGACGTCGG
ACATCAAGTGGCTGGGAGTGCGGCCGTCCGACCTGGACAAGTACGGGATC
CCGCCCCAGTGCCGTCTGGATATGACGGATCACGATATGCGCACAGGACG
CCAGCTCCTTCAGGAGGATTTCATCCAGAAGAACCCAGAATGGGTCAAGG
AGTTGCAGCTGATgctgaagatgaagaaaaaggctGAGATACAGGCCTTG
TCCGCCTTTGGTTTCCAATACATCACGGAGGACTACTTGCCTCGGAAact
ggagaagggggatTGGATTTAG back to top
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