EWM25406.1, cds5211 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25406.1 vs. NCBI_GenBank
Match: gi|585107167|gb|EWM25406.1| (dna topoisomerase 6 subunit a [Nannochloropsis gaditana]) HSP 1 Score: 1173.3 bits (3034), Expect = 0.000e+0 Identity = 573/573 (100.00%), Postives = 573/573 (100.00%), Query Frame = 0
Query: 1 MVRRRSVKDDTSSEEEEEEEVSSSDEEDEDSDFSPWEATTRKGKKITKAAPEQSIARSHTAATLTSSASKKKSPSQPRSLGKKEGKRGGGHGTVPRKAAAARTGTTSPGTLAGRKRRKLEREEDDEEEGKEEDEAKEVYDEDEEEDDDDEPEGKSRGGSTRRMTGKNQRKTKGLNVTGVGNSKVDKVLEEVRQLMLRSRRDDAPNPTLADLGITTVREVSDMAPEGVLFEIEKTILAAAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRAFLNPREVRKTAITTRIMQLVHEVLSKGIHITKRDMFYTDVKLFRDQKDSDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDFIDCTRMGVGGKAIPPYVDKIACIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKTELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYGIPPQCRLDMTDHDMRTGRQLLQEDFIQKNPEWVKELQLMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 573
MVRRRSVKDDTSSEEEEEEEVSSSDEEDEDSDFSPWEATTRKGKKITKAAPEQSIARSHTAATLTSSASKKKSPSQPRSLGKKEGKRGGGHGTVPRKAAAARTGTTSPGTLAGRKRRKLEREEDDEEEGKEEDEAKEVYDEDEEEDDDDEPEGKSRGGSTRRMTGKNQRKTKGLNVTGVGNSKVDKVLEEVRQLMLRSRRDDAPNPTLADLGITTVREVSDMAPEGVLFEIEKTILAAAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRAFLNPREVRKTAITTRIMQLVHEVLSKGIHITKRDMFYTDVKLFRDQKDSDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDFIDCTRMGVGGKAIPPYVDKIACIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKTELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYGIPPQCRLDMTDHDMRTGRQLLQEDFIQKNPEWVKELQLMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI
Sbjct: 1 MVRRRSVKDDTSSEEEEEEEVSSSDEEDEDSDFSPWEATTRKGKKITKAAPEQSIARSHTAATLTSSASKKKSPSQPRSLGKKEGKRGGGHGTVPRKAAAARTGTTSPGTLAGRKRRKLEREEDDEEEGKEEDEAKEVYDEDEEEDDDDEPEGKSRGGSTRRMTGKNQRKTKGLNVTGVGNSKVDKVLEEVRQLMLRSRRDDAPNPTLADLGITTVREVSDMAPEGVLFEIEKTILAAAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRAFLNPREVRKTAITTRIMQLVHEVLSKGIHITKRDMFYTDVKLFRDQKDSDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDFIDCTRMGVGGKAIPPYVDKIACIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKTELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYGIPPQCRLDMTDHDMRTGRQLLQEDFIQKNPEWVKELQLMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 573
BLAST of EWM25406.1 vs. NCBI_GenBank
Match: gi|698777825|ref|XP_009821956.1| (hypothetical protein H257_00790 [Aphanomyces astaci] >gi|574124081|gb|ETV89556.1| hypothetical protein H257_00790 [Aphanomyces astaci]) HSP 1 Score: 574.704 bits (1480), Expect = 0.000e+0 Identity = 265/387 (68.48%), Postives = 325/387 (83.98%), Query Frame = 0
Query: 187 VLEEVRQLMLRSRRDDAPNPTLADLGITTVREVSDMAPEGVLFEIEKTILAAAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRAFLNPREVRKTAITTRIMQLVHEVLSKGIHITKRDMFYTDVKLFRDQKDSDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDFIDCTRMGVGGKAIPPYVDKIACIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKTELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYGIPPQCRLDMTDHDMRTGRQLLQEDFIQKNPEWVKELQLMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 573
VL++V QL ++ PTLA+L + VREV +M P V EIE ++ ILRGEGF Y VP+R+ NQ+Y+ ELDRIVL+DK++ R F N VRKTAITT++M+LVH++L+KGIH+TKRD+FYTDVKLF+DQ +SD +LDDVACM+GCTRS L+VVASEKG+VVGR+ F +DGD IDCTRMGVGGKAIPPY+D++ I SDAKFILLVEK+AA+MRLAEDRFYNKYPCI++TAKGQPDVATR+FLK+++ ELH+PVLGLVDSDPYGLKILSVYM+GSKNMSYDSASLT DIKWLGVRPSDL KY IP QCRL M + D++TG+ +L+E+FI+KNP W KEL+LMLK K+KAEIQALS FGFQ++T++YLP+KL GDWI
Sbjct: 56 VLKKVNQLT-QALASGGQLPTLAELNVFNVREVREMVPTEVSTEIESMVVGVVSSILRGEGFRYAVPSRTTANQIYVTELDRIVLADKLSVRDFTNMSAVRKTAITTKVMELVHQLLAKGIHVTKRDLFYTDVKLFKDQSESDTILDDVACMVGCTRSSLHVVASEKGVVVGRIAFRDDGDLIDCTRMGVGGKAIPPYIDRLTDITSDAKFILLVEKDAAFMRLAEDRFYNKYPCIILTAKGQPDVATRMFLKRIQNELHLPVLGLVDSDPYGLKILSVYMSGSKNMSYDSASLTCRDIKWLGVRPSDLTKYKIPDQCRLPMKETDIKTGKDMLEEEFIKKNPLWSKELELMLKSKEKAEIQALSTFGFQFLTQEYLPQKLRDGDWI 441
BLAST of EWM25406.1 vs. NCBI_GenBank
Match: gi|971520589|dbj|GAQ77576.1| (Topoisomerase 6 subunit A homolog 3 [Klebsormidium nitens]) HSP 1 Score: 563.918 bits (1452), Expect = 0.000e+0 Identity = 263/390 (67.44%), Postives = 326/390 (83.59%), Query Frame = 0
Query: 185 DKVLEEVRQLMLRSRRDDAPNPTLADLGITTV-REVSDMAPEGVLFEIEKTILAAAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRAFLNPREVRKTAITTRIMQLVHEVLSKGIHITKRDMFYTDVKLFRDQKDSDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDFIDCTRMGVGGKAIPPYVDKIACIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKTELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYGIPPQCRLDMTDHDMRTGRQLLQEDFIQKNPEWVKELQLMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 573
D++L +V +L ++ + TL DL + V +EV D+ V+ EIEKT+L+ A IL G GF Y +PTR++ NQLY+ +LDRIVL DK + R + N VRKTAITTRI+QL+H++ +KGIH+TKRD+FYTDVKLF++Q SD +LDDV+CMLGCTRS LNVV SEKG+VVGR+ F EDGD IDCT+MGVGGKAIPP +DK+ QSDAKFILLVEK+AA+MRLAEDRFYN++PC++ITAKGQPDVATRLFLKK+K+EL IPVLGLVDSDPYGLKILSVYM+GSKNMSYDS++LTT DIKWLGVRPSDLD++ IP QCRL MTD DM+TG+++L+EDFI+K+P W EL+LM+K K+KAEIQALS+FGFQY+TE YLP KL++GDWI
Sbjct: 28 DEILAKVAKLSEAEKKKPKESVTLQDLNLPNVSKEVVDLGAPQVISEIEKTMLSVAASILNGHGFGYTIPTRTSANQLYVPQLDRIVLKDKSSFRQYGNMSTVRKTAITTRILQLIHQLCNKGIHVTKRDLFYTDVKLFQEQGQSDTILDDVSCMLGCTRSSLNVVGSEKGVVVGRLIFVEDGDVIDCTKMGVGGKAIPPNIDKVTGFQSDAKFILLVEKDAAFMRLAEDRFYNRFPCVIITAKGQPDVATRLFLKKMKSELKIPVLGLVDSDPYGLKILSVYMSGSKNMSYDSSNLTTPDIKWLGVRPSDLDRFKIPEQCRLPMTDADMKTGKEMLEEDFIKKDPRWHAELELMVKKKEKAEIQALSSFGFQYLTEVYLPMKLQEGDWI 417
BLAST of EWM25406.1 vs. NCBI_GenBank
Match: gi|219111201|ref|XP_002177352.1| (type II DNA topoisomerase VI subunit [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411887|gb|EEC51815.1| type II DNA topoisomerase VI subunit [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 555.829 bits (1431), Expect = 0.000e+0 Identity = 256/358 (71.51%), Postives = 313/358 (87.43%), Query Frame = 0
Query: 216 VREVSDMAPEGVLFEIEKTILAAAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRAFLNPREVRKTAITTRIMQLVHEVLSKGIHITKRDMFYTDVKLFRDQKDSDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDFIDCTRMGVGGKAIPPYVDKIACIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKTELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYGIPPQCRLDMTDHDMRTGRQLLQEDFIQKNPEWVKELQLMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 573
+ EV ++ VL +E L A +L +GFS ++P+R+A+NQ+Y+ E DRIVL K ++R+FLN +E RK+AIT R+MQL+H VL K IHITKRD+FYTDVKLF DQ +SD VLDDVA M+GCTRS L+VVAS+KGLVVGR+QFEEDGDFIDCT+MGVGGKAIPPY+DKI I SDA+FILLVEKEAAYMR+AEDRFY++YPCI+ITAKGQPDVATR+FL ++ +EL IPVLGLVDSDPYGLKILSVYM+GSKNMSYDSASLTT DIKWLG+RPSDLDKY +P QCRLDMT++D++TG+++++EDFIQKNPEW+KEL++M+K KKKAEIQALS+FGFQY+TE YLPRKL++GDWI
Sbjct: 73 IVEVVELPATQVLEGMEAMALHIAQQVLERKGFSLEIPSRAASNQIYVKEWDRIVLGGKRSSRSFLNVKESRKSAITLRVMQLLHAVLMKRIHITKRDLFYTDVKLFVDQAESDGVLDDVATMIGCTRSNLHVVASDKGLVVGRIQFEEDGDFIDCTKMGVGGKAIPPYIDKIENIASDAEFILLVEKEAAYMRMAEDRFYHRYPCIIITAKGQPDVATRMFLARITSELKIPVLGLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLGLRPSDLDKYDLPEQCRLDMTENDIKTGKEMMKEDFIQKNPEWMKELEIMVKTKKKAEIQALSSFGFQYVTEQYLPRKLKEGDWI 430
BLAST of EWM25406.1 vs. NCBI_GenBank
Match: gi|754345858|ref|XP_004363895.2| (topoisomerase [Capsaspora owczarzaki ATCC 30864] >gi|765551399|gb|KJE92020.1| topoisomerase [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 555.444 bits (1430), Expect = 0.000e+0 Identity = 257/387 (66.41%), Postives = 318/387 (82.17%), Query Frame = 0
Query: 187 VLEEVRQLMLRSRRDDAPNPTLADLGITTVREVSDMAPEGVLFEIEKTILAAAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRAFLNPREVRKTAITTRIMQLVHEVLSKGIHITKRDMFYTDVKLFRDQKDSDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDFIDCTRMGVGGKAIPPYVDKIACIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKTELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYGIPPQCRLDMTDHDMRTGRQLLQEDFIQKNPEWVKELQLMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 573
VL+EV +L ++ TL +LGI+ REV+ M V IE+ ++ AA IL G GFSY VP+R+++NQLY+ +L+RIVL V+ R F + VRKTAITTR++ LVHEVL+K IHITKRD+FYTDVKLF Q DSD VLDDVACM+GCTR+ LNVVASEKG+V+GRV F +DGDFIDCT+MGVGGKAIP +D+I +Q DA+F+LLVEK+AA+MRL+EDRFYN+YPCI+ITA+GQPDV+TRLFL +KT L+IP+LGLVDSDPYGLKILSVY++GSKNMSYDSASLTTSDIKWLGVRPSDL+ Y IP +CRLDMT+ D++ G+ LL+EDFI+ NP W+ EL+LMLK K+KAEIQALS FGFQY+T+ YLP KL++GDWI
Sbjct: 33 VLQEVNKLAKAQQQSVKHRATLEELGISDAREVAVMDDADVAQTIERIVIQAAQSILAGTGFSYDVPSRASSNQLYVPQLERIVLKSAVSNRPFSSTATVRKTAITTRVLSLVHEVLNKRIHITKRDLFYTDVKLFEKQNDSDAVLDDVACMIGCTRTSLNVVASEKGVVIGRVTFRDDGDFIDCTKMGVGGKAIPSLIDRITDLQGDAQFVLLVEKDAAFMRLSEDRFYNQYPCIIITARGQPDVSTRLFLNMVKTRLNIPILGLVDSDPYGLKILSVYLSGSKNMSYDSASLTTSDIKWLGVRPSDLETYNIPKECRLDMTESDIKYGQDLLKEDFIKNNPAWMAELELMLKTKEKAEIQALSNFGFQYLTQTYLPLKLQQGDWI 419
BLAST of EWM25406.1 vs. NCBI_GenBank
Match: gi|698576587|ref|XP_009776251.1| (PREDICTED: DNA topoisomerase 6 subunit A [Nicotiana sylvestris] >gi|1025122055|ref|XP_016463309.1| PREDICTED: DNA topoisomerase 6 subunit A-like [Nicotiana tabacum]) HSP 1 Score: 554.673 bits (1428), Expect = 0.000e+0 Identity = 257/388 (66.24%), Postives = 322/388 (82.99%), Query Frame = 0
Query: 187 VLEEVRQLMLRSRRDDAPNPTLADLGI-TTVREVSDMAPEGVLFEIEKTILAAAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRAFLNPREVRKTAITTRIMQLVHEVLSKGIHITKRDMFYTDVKLFRDQKDSDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDFIDCTRMGVGGKAIPPYVDKIACIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKTELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYGIPPQCRLDMTDHDMRTGRQLLQEDFIQKNPEWVKELQLMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 573
+L+ ++ L S + PTLAD+G+ TT REV+D+ + V + I +L A IL GEGFS+ VP+RS+ NQLY+ ELDRI+L DK + RAF N VRKT ITTRI+QL+H++ +K IH+TKRD+FYTDVKLF+DQ SD VLDDV+C+LGCTRS LNVVA+EKG+VVGR+ F +DGD IDCT+MG+GGKAIPP +D++ +QSDA FILLVEK+AAYMRLAEDRFYN++PCI++TAKGQPDVATRLFL+K+K EL++PVL LVDSDPYGLKILSVY GSKNMSYDSA+LTT DIKWLG+RPSDLDKY IP QCRL MT+ D++TG+ LL+EDF++KNP WV+EL LM+K K+KAEIQALS+FGFQY++E YLP KL++ DW+
Sbjct: 33 ILQTLKNLKASSAASSSKTPTLADVGLSTTCREVTDLPIDEVQYNIGSVMLNLARSILAGEGFSFNVPSRSSANQLYVPELDRIILKDKSSIRAFSNVSTVRKTTITTRILQLIHQLCTKNIHVTKRDLFYTDVKLFQDQTQSDTVLDDVSCILGCTRSSLNVVAAEKGVVVGRLIFSDDGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELNLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPAWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQEQDWL 420
BLAST of EWM25406.1 vs. NCBI_GenBank
Match: gi|168022302|ref|XP_001763679.1| (predicted protein [Physcomitrella patens] >gi|162685172|gb|EDQ71569.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 553.903 bits (1426), Expect = 0.000e+0 Identity = 258/388 (66.49%), Postives = 323/388 (83.25%), Query Frame = 0
Query: 187 VLEEVRQLMLRSRRDDAPNPTLADLGI-TTVREVSDMAPEGVLFEIEKTILAAAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRAFLNPREVRKTAITTRIMQLVHEVLSKGIHITKRDMFYTDVKLFRDQKDSDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDFIDCTRMGVGGKAIPPYVDKIACIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKTELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYGIPPQCRLDMTDHDMRTGRQLLQEDFIQKNPEWVKELQLMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 573
+L+ V + ++ D TLADL + + +EV ++ V+ E+EK+ILA A IL G GF Y +P+RS+ NQLY+ ELDRIVL DK + R F N VRKTAITTRI+QLVH++ +K IH+TKRD+FYTDVKLF++Q SD +LDDV+CMLGCTRS LNVVASEKG+VVGR+ F EDGD IDCT+MGVGGKAIPP +DK+ ++SDA FILLVEK+AA+MRLAEDRFYN++PC+++TAKGQPDVATRLFLKK+KT+L +PVLGLVDSDPYGLKILSVYM+GSKNMSYDS++LTT DIKWLGVRPSDL+KY IP QCRL M+D D++TG+ +L+EDFI+K+ WVKEL+LM+K K+KAEIQALS+FGFQY++E YLP KL++ DWI
Sbjct: 26 ILKIVTKFAEAAKEADVETRTLADLNLANSCKEVVELNTRSVVLEVEKSILAIAKSILSGNGFGYLIPSRSSANQLYVPELDRIVLKDKASFRQFANIASVRKTAITTRILQLVHQLCTKQIHVTKRDLFYTDVKLFQEQGQSDTILDDVSCMLGCTRSSLNVVASEKGVVVGRLIFIEDGDRIDCTKMGVGGKAIPPNIDKVQGMESDALFILLVEKDAAFMRLAEDRFYNRFPCVILTAKGQPDVATRLFLKKMKTDLKLPVLGLVDSDPYGLKILSVYMSGSKNMSYDSSNLTTPDIKWLGVRPSDLNKYKIPEQCRLPMSDQDIKTGKDMLEEDFIKKDKNWVKELELMVKTKEKAEIQALSSFGFQYLSEVYLPLKLQQEDWI 413
BLAST of EWM25406.1 vs. NCBI_GenBank
Match: gi|552825097|ref|XP_005846746.1| (hypothetical protein CHLNCDRAFT_31596 [Chlorella variabilis] >gi|307106398|gb|EFN54644.1| hypothetical protein CHLNCDRAFT_31596 [Chlorella variabilis]) HSP 1 Score: 553.518 bits (1425), Expect = 0.000e+0 Identity = 270/422 (63.98%), Postives = 326/422 (77.25%), Query Frame = 0
Query: 153 GKSRGGSTRRMTGKNQRKTKGLNVTGVGNSKVDKVLEEVRQLMLRSRRDDAPNPTLADLGIT-TVREVSDMAPEGVLFEIEKTILAAAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRAFLNPREVRKTAITTRIMQLVHEVLSKGIHITKRDMFYTDVKLFRDQKDSDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDFIDCTRMGVGGKAIPPYVDKIACIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKTELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYGIPPQCRLDMTDHDMRTGRQLLQEDFIQKNPEWVKELQLMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 573
GK + G+ +T N++K K VD++L +V+ L R + + TLA+L + REV D VL EIE IL A +LRGEGF+Y +P+RS NQLY+ ELDRIVL D + RAF N RK ITTRI+QLVHE+ +K IH+TKRD+FYTDVKLF DQ +SD +LDD+ACMLGCTRS L+VVASEKG+VVGR+ F EDGD IDC RMGVGGKAIPP +DK+ I SDA FILLVEK+AA+MRLAEDRFYN YPCI+ITAKGQPDVATRLFL+KLK L IPVL LVDSDPYGLKILSVYM GS NMSYDS++LTT DIKWLGVRPSDLD++ IP QCRL MTD D++TG++LL+EDF++ NPEWVKEL++M+ K KAEIQALS+FGFQY+++ YLP KL++GDWI
Sbjct: 7 GKKKAGT--ELTALNKKKLKS----------VDEILGKVKWLAERVKGEPEVQKTLAELNLPHACREVVDKDAGAVLDEIETAILFVAASVLRGEGFTYTLPSRSKANQLYVPELDRIVLKDSQSHRAFANTSTCRKAVITTRILQLVHELCTKRIHVTKRDLFYTDVKLFEDQSNSDAILDDLACMLGCTRSSLHVVASEKGVVVGRLTFREDGDPIDCRRMGVGGKAIPPNIDKVDAITSDAMFILLVEKDAAFMRLAEDRFYNTYPCIIITAKGQPDVATRLFLRKLKQVLRIPVLALVDSDPYGLKILSVYMKGSMNMSYDSSNLTTPDIKWLGVRPSDLDRFSIPQQCRLPMTDEDIKTGKKLLEEDFVKANPEWVKELEIMVTTKVKAEIQALSSFGFQYLSQQYLPLKLQEGDWI 416
BLAST of EWM25406.1 vs. NCBI_GenBank
Match: gi|1111065262|ref|XP_019239263.1| (PREDICTED: DNA topoisomerase 6 subunit A [Nicotiana attenuata] >gi|1102270309|gb|OIT21152.1| dna topoisomerase 6 subunit a [Nicotiana attenuata]) HSP 1 Score: 551.592 bits (1420), Expect = 0.000e+0 Identity = 256/388 (65.98%), Postives = 322/388 (82.99%), Query Frame = 0
Query: 187 VLEEVRQLMLRSRRDDAPNPTLADLGI-TTVREVSDMAPEGVLFEIEKTILAAAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRAFLNPREVRKTAITTRIMQLVHEVLSKGIHITKRDMFYTDVKLFRDQKDSDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDFIDCTRMGVGGKAIPPYVDKIACIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKTELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYGIPPQCRLDMTDHDMRTGRQLLQEDFIQKNPEWVKELQLMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 573
+L+ ++ L + S + TLAD+G+ TT REV+D+ + V + I +L A IL GEGFS+ VP+RS+ NQLY+ ELDRI+L DK + RAF N VRKT ITTRI+QL+H++ +K IH+TKRD+FYTDVKLF+DQ SD VLDDV+C+LGCTRS LNVVA+EKG+VVGR+ F +DGD IDCT+MG+GGKAIPP +D++ +QSDA FILLVEK+AAYMRLAEDRFYN++PCI++TAKGQPDVATRLFL+K+K EL++PVL LVDSDPYGLKILSVY GSKNMSYDSA+LTT DIKWLG+RPSDLDKY IP QCRL MT+ D++TG+ LL+EDF++KNP WV+EL LM+K K+KAEIQALS+FGFQY++E YLP KL++ DW+
Sbjct: 33 ILQTLKTLKVSSAASSSKTLTLADVGLSTTCREVTDLPIDEVQYNIGSVMLNLARSILAGEGFSFNVPSRSSANQLYVPELDRIILKDKSSVRAFSNVSTVRKTTITTRILQLIHQLCTKNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVSCILGCTRSSLNVVAAEKGVVVGRLIFSDDGDIIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELNLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPAWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQEQDWL 420
BLAST of EWM25406.1 vs. NCBI_GenBank
Match: gi|697187007|ref|XP_009602544.1| (PREDICTED: DNA topoisomerase 6 subunit A [Nicotiana tomentosiformis] >gi|1025160200|ref|XP_016469099.1| PREDICTED: DNA topoisomerase 6 subunit A-like [Nicotiana tabacum]) HSP 1 Score: 551.206 bits (1419), Expect = 0.000e+0 Identity = 256/388 (65.98%), Postives = 321/388 (82.73%), Query Frame = 0
Query: 187 VLEEVRQLMLRSRRDDAPNPTLADLGI-TTVREVSDMAPEGVLFEIEKTILAAAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRAFLNPREVRKTAITTRIMQLVHEVLSKGIHITKRDMFYTDVKLFRDQKDSDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDFIDCTRMGVGGKAIPPYVDKIACIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKTELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYGIPPQCRLDMTDHDMRTGRQLLQEDFIQKNPEWVKELQLMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 573
+L+ ++ L S + TLAD+G+ TT REV+D+ + V + I +L A IL GEGFS+ VP+RS+ NQLY+ ELDRI+L DK + RAF N VRKT ITTRI+QL+H++ +K IH+TKRD+FYTDVKLF+DQ SD VLDDV+C+LGCTRS LNVVA+EKG+VVGR+ F +DGD IDCT+MG+GGKAIPP +D++ +QSDA FILLVEK+AAYMRLAEDRFYN++PCI++TAKGQPDVATRLFL+K+K EL++PVL LVDSDPYGLKILSVY GSKNMSYDSA+LTT DIKWLG+RPSDLDKY IP QCRL MT+ D++TG+ LL+EDF++KNP WV+EL LM+K K+KAEIQALS+FGFQY++E YLP KL++ DW+
Sbjct: 33 ILQTLKNLKASSAASSSKTLTLADVGLSTTCREVTDLPIDEVQYNIGSVMLNLARSILAGEGFSFNVPSRSSANQLYVPELDRIILKDKSSVRAFSNVSTVRKTTITTRILQLIHQLCTKNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVSCILGCTRSSLNVVAAEKGVVVGRLIFSDDGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELNLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPDQCRLPMTEQDIKTGKDLLEEDFVKKNPAWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQEQDWV 420 The following BLAST results are available for this feature:
BLAST of EWM25406.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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