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Properties
| Property Name | Value |
|---|
| Product | ubiquitin-conjugating enzyme e2-17 kda |
| Orig transcript id | gnl|cribi|Naga_100207g3.9440.mrna |
| Orig protein id | gnl|cribi|Naga_100207g3.9440 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:436042..437702 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5212 ID=rna5212|Name=rna5212|organism=Nannochloropsis gaditana|type=mRNA|length=2168bp
AAACATCGGAACCCCGTCAAGAATATGCAGCGTCCACATGCTATAATATG
TGTTAGAAAGAGTGTCCCCGTCAGTCCCAGTGATCGTGCATAAATAAGAA
CGTGGGGGCGGGTCGCTAGCTGCTGCCAGCATGTCCCGCCTACACAGCCG
TACGCCCTCAGTCCCTGAACGTTCCGCCAATGTCATGGCGCTTTATCTAT
ACAAGAAGAGAGATTTTGCAAGTGTTGTCGAGCTTATCAATACGAGCCTC
TGGTTAGGAAGTGAGTGACGTGTGTAGCAAAGACGTCGCCTACTGTAGTT
AGTAACTTCTTGCCTTGACCTCCCCACCTTCGTTTGCCACAGCTCCCCAC
AGCAACCTTGGGTGCCTTTCGTTGTACTTCGAATAAATTGCACGTTGAAT
AGTAGAGCAAGTATGTGAAGTCATCGGTCTCGTTTGTACTGGGTACACTC
GGCTTATCTCATCCGTTTTCACAACCCCCGCGAGCAGGGCCCGCCACACA
GCAAAGTCAATCGAGGATTGCACACAAGCATGGCGAATGGAAGCGTTGTG
CGCACATTTGAAGAAGAAATGGGATTTCTTCACCGCGAGACGCCAACACG
ATTCCGCATTGACAAGGGCTGCGTGCCCAACATGAAGGTGGAAGGTGCCT
TCTACGTCAACACCAAATTAGAGGAGCTGATGTTCGCGGAGCTCAAGCAG
CATACAACAGCGGGTGGCGTCGGCGGATTTCTCCCAGCTGTGAAACAGAT
CGCAAATGTGGCGGCATTGCCGGGGATCGTGGGACGGTCCATCGGTTTGC
CCGATGTCCACTCCGGCTATGGTTTTGCGATAGGCAACGTGGCCGCGTTC
GCCGTTGCCGACACGGAGGCTATTGTCTCGCCGGGGGGGGTGGGATTCGA
CATCAACTGTGGTGTTCGCCTGATTCGGACCAATTTGACGGAAGAAGACG
TGCGCGGAAAGCGAGAAAAGCTGACACAGTCCCTGTTTGACCACATTCCC
GTGGGCGTGGGGTCGAAAGGCGTCATTCCGACCTCAGCGGCGGACTTGGA
GGCCGCCTTGGAGATGGGCATGGACTGGTCCCTGAGAGAGGGGTACGCCT
GGGCGGAGGACAACGAGCACTGCGAGGAGAACGGGCGTATGCGGCAAGCA
GACCCGACCAAGGTGGGAATGCGGGCCAAGAAGAGAGGCCTGCCGCAGCT
GGGTACTCTGGGCGCTGGGAACCACTATGCAGAGATCCAGGTGGTGGAGG
AGATCCACGACCCGCGGGCGGCAGCGAGGATGGGGATCGATCAGATTGGA
CAGGTATGTGTGATGATTCACTCGGGAAGCCGGGGCTTGGGGCACCAGGT
GGCCACTGACGCCTTGGTGGAGATGGAGAGGGCCATGGCCAGGGACGGCA
TCCTCACGAACGACAGGCAACTGGCCTGCGCCCGGATCCAGAGTCCGGAG
GGACAGAACTACCTGGCGGCCATGGCGGCTGCCGCCAATTTCGCCTGGGT
AAACCGGTCGAGCATGACCTTTTTGACGCGGCAGGCCTTCGCGAAGATGT
TCGAGGCGACGCCCGACGACCTGGACATGCACGTGATCTACGACGTCTCC
CATAACATCGCCAAGGTGGAAGAGCACATGTACCAAGGGAGGCCCAAGAC
CTTGTTGGTCCACCGGAAAGGCTCCACGCGCGCTTTCCCGCCAAATCATC
CCCTCATTCCGGTGGACTACCAGTTCACTGGTCAGCCTGTCTTGATAGGG
GGGACCATGGGCACATGCAGCTATGTACTCACAGGCACGGACAAAGGCTT
GGAGGAGACTTTCGGTAGCACGTGTCACGGGGCTGGGCGGGCGCAGAGTC
GAAACAAGAGTCGGAAAACCCTGGAATACACGGAGGTGTTGGCGGCCTTG
GAGGAGAAAGGGATATCTATTCGCGTCGCTAGTCCGAAACTGGTCATGGA
GGAGGCACCAGAGTCGTACAAGGATGTGACACAGGTAGTAGATACGTGTC
ATGAGGCTGGTATAAGCCGAAAAGCAATTAAACTTCGCCCGATCGCTGTT
GTGAAGGGTTGAAAATAAACCTCTGGGAGAGGAAGCAGTTAAGAAGTCAT
CGGACTCTCAAAAAGATGAAATGGACCGTTGTAGAAGAAAGCACCAATAA
CACAGAAACTTCCATGGT back to topprotein sequence of rna5212 >rna5212-protein ID=rna5212-protein|Name=rna5212|organism=Nannochloropsis gaditana|type=polypeptide|length=391bp
MHEGYGYTSDHYRIQRPQNSQDNYGRAVIRVKKELQQSELPPNCSVQPWA
SRKFGTKQCNADPKCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELE
VPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIF
GIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQAVRRTSAGD
KRGRTTSTLPELPSFASHPAAEAISVPSGSSASTSMDTLVSTCELDCSAR
KRKALNETEPPERGLEAMCIDEKFEDFHTHDSVRPDPGSGGSRALSVASF
IQQEPPSMEMEEKFASRSRHTQHSKRARSFGGQGGGLGGAGESHAGFAAM
AQAAGIGGQQRSRVGDLVAFNQSLPFSIVMTDGMKAPPPAS back to topmRNA from alignment at CM002465.1:436042..437702+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5212 ID=rna5212|Name=rna5212|organism=Nannochloropsis gaditana|type=mRNA|length=1661bp|location=Sequence derived from alignment at CM002465.1:436042..437702+ (Nannochloropsis gaditana)
TGTACAAATTTCCGTGCCCATAAACATCTTCAAGTACTCAAATTTCACAT
CCTTACAGGAAGCACGCGATCGCAGTTGAAACTTTCCCCTGTTCCAGTCG
TGCTTGGAAGAAAGCGTGTGGTACAAGCCAATTTTTGTTGTGGATTGAAA
GAcggctgctggaggaaggacaaAAAGCTCACGACCGGCAGTCAGTAGCT
GGCCCCTTCTCTAGCACGTGGCCAGACGGCGGAGACAGTATGCACGAGGG
CTATGGTTATACCTCCGATCATTATCGCATTCAACGGCCACAAAATAGTC
AGGACAACTACGGGAGAGCAGTAATCCGTGTGAAGAAGGAGCTTCAGCAG
AGCGAGTTGCCCCCCAACTGCTCTGTCCAGCCCTGGGCGAGCAGAAAATT
TGGTACAAAACAATGCAACGCCGATCCTAAATGTAGCAATGCACCCGTAG
ACTTTCAAAAGCTGCTTCATTGGCAGGTGACCATGCTAGGGCCGCGGGAA
AGCCCTTTCGAAGGCGTACCCCTTCTCTTCGAGCTGGAAGtgcccccttc
ctacccctTCAAGCCGCCCCGTGTCACCTGCCACTCCTGCTGTTGGCATC
CCAACGTGTGCGCCTCGACAGGGCAAGTCATCCTGCCTATCATCGGGGAA
GACTGGCGGCCTACACTGTCGCTCAGCACCCTCATCTTCGGCATCCATCT
CGCGCTCTTGGAAGCTAATGTTGACGTGGCAGTCAATTCGGCTGCAGCAG
AAGCCTACGTGCACCACACGGATCTTTACCACGCACAAGCCAGAGAAATG
CTGAAAGGGCAAGCTGTGCGGAGGACCAGCGCTGGCGACAAAAGAGGCCG
GACTACGAGCACGCTTCCGGAGCTTCCGTCGTTCGCGTCTCACCCCGCCG
CTGAGGCCATATCTGTGCCGTCCGGGTCAAGCGCAAGCACGAGTATGGAC
ACGCTTGTCAGCACATGTGAGCTTGACTGCTCTGCGCGAAAACGCAAAGC
TTTAAACGAGACCGAACCGCCTGAGCGGGGCTTGGAGGCCATGTGCATCG
ATGAAAAGTTCGAAGACTTCCACACCCATGATAGCGTCCGCCCCGACCCA
GGCTCAGGAGGGTCTCGAGCTTTGTCGGTTGCATCCTTTATACAGCAGGA
GCCTCCATCtatggaaatggaggagaaatttGCCTCCCGCTCGAGACATA
CGCAGCATAGCAAGAGAGCTCGGAGTTTTGGgggccaaggggggggacta
ggaggggctggggaaTCGCATGCTGGATTTGCGGCGATGGCACAAGCTGC
AGGGATAGGTGGACAGCAGCGAAGCCGCGTTGGGGATCTGGTAGCCTTTA
ATCAAAGCCTCCCGTTTTCGATTGTTATGACTGATGGGATGAAGGCACCC
CCCCCGGCAAGCTAGACtccgaagggaggaagagagagcgcAGAAGGCAA
ACTCGGAGGTAAAAAAGGCAGAACAGTCTATCTAAGGTTGTGAAAAGCTG
TCGTGTACATAGAGGTGACAATTTCCCGAGCACGCGCAGTCACATGCGGC
AGCACAGGGACACCCTGGGGGTATGTGGGGCATGCGTCCCACAGAGTAAC
AGAATAAAATCTTAGGCTAGCCTAAGCTTTCTTTAAATCATGCAGGTcaa
tcttttttttt back to topCoding sequence (CDS) from alignment at CM002465.1:436042..437702+ >rna5212 ID=rna5212|Name=rna5212|organism=Nannochloropsis gaditana|type=CDS|length=1176bp|location=Sequence derived from alignment at CM002465.1:436042..437702+ (Nannochloropsis gaditana)
ATGCACGAGGGCTATGGTTATACCTCCGATCATTATCGCATTCAACGGCC
ACAAAATAGTCAGGACAACTACGGGAGAGCAGTAATCCGTGTGAAGAAGG
AGCTTCAGCAGAGCGAGTTGCCCCCCAACTGCTCTGTCCAGCCCTGGGCG
AGCAGAAAATTTGGTACAAAACAATGCAACGCCGATCCTAAATGTAGCAA
TGCACCCGTAGACTTTCAAAAGCTGCTTCATTGGCAGGTGACCATGCTAG
GGCCGCGGGAAAGCCCTTTCGAAGGCGTACCCCTTCTCTTCGAGCTGGAA
GtgcccccttcctacccctTCAAGCCGCCCCGTGTCACCTGCCACTCCTG
CTGTTGGCATCCCAACGTGTGCGCCTCGACAGGGCAAGTCATCCTGCCTA
TCATCGGGGAAGACTGGCGGCCTACACTGTCGCTCAGCACCCTCATCTTC
GGCATCCATCTCGCGCTCTTGGAAGCTAATGTTGACGTGGCAGTCAATTC
GGCTGCAGCAGAAGCCTACGTGCACCACACGGATCTTTACCACGCACAAG
CCAGAGAAATGCTGAAAGGGCAAGCTGTGCGGAGGACCAGCGCTGGCGAC
AAAAGAGGCCGGACTACGAGCACGCTTCCGGAGCTTCCGTCGTTCGCGTC
TCACCCCGCCGCTGAGGCCATATCTGTGCCGTCCGGGTCAAGCGCAAGCA
CGAGTATGGACACGCTTGTCAGCACATGTGAGCTTGACTGCTCTGCGCGA
AAACGCAAAGCTTTAAACGAGACCGAACCGCCTGAGCGGGGCTTGGAGGC
CATGTGCATCGATGAAAAGTTCGAAGACTTCCACACCCATGATAGCGTCC
GCCCCGACCCAGGCTCAGGAGGGTCTCGAGCTTTGTCGGTTGCATCCTTT
ATACAGCAGGAGCCTCCATCtatggaaatggaggagaaatttGCCTCCCG
CTCGAGACATACGCAGCATAGCAAGAGAGCTCGGAGTTTTGGgggccaag
gggggggactaggaggggctggggaaTCGCATGCTGGATTTGCGGCGATG
GCACAAGCTGCAGGGATAGGTGGACAGCAGCGAAGCCGCGTTGGGGATCT
GGTAGCCTTTAATCAAAGCCTCCCGTTTTCGATTGTTATGACTGATGGGA
TGAAGGCACCCCCCCCGGCAAGCTAG back to top
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