EWM25474.1, cds5200 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25474.1 vs. NCBI_GenBank
Match: gi|585107237|gb|EWM25474.1| (ubiquitin-conjugating enzyme e2-17 kda [Nannochloropsis gaditana]) HSP 1 Score: 813.527 bits (2100), Expect = 0.000e+0 Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0
Query: 1 MHEGYGYTSDHYRIQRPQNSQDNYGRAVIRVKKELQQSELPPNCSVQPWASRKFGTKQCNADPKCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQAVRRTSAGDKRGRTTSTLPELPSFASHPAAEAISVPSGSSASTSMDTLVSTCELDCSARKRKALNETEPPERGLEAMCIDEKFEDFHTHDSVRPDPGSGGSRALSVASFIQQEPPSMEMEEKFASRSRHTQHSKRARSFGGQGGGLGGAGESHAGFAAMAQAAGIGGQQRSRVGDLVAFNQSLPFSIVMTDGMKAPPPAS 391
MHEGYGYTSDHYRIQRPQNSQDNYGRAVIRVKKELQQSELPPNCSVQPWASRKFGTKQCNADPKCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQAVRRTSAGDKRGRTTSTLPELPSFASHPAAEAISVPSGSSASTSMDTLVSTCELDCSARKRKALNETEPPERGLEAMCIDEKFEDFHTHDSVRPDPGSGGSRALSVASFIQQEPPSMEMEEKFASRSRHTQHSKRARSFGGQGGGLGGAGESHAGFAAMAQAAGIGGQQRSRVGDLVAFNQSLPFSIVMTDGMKAPPPAS
Sbjct: 1 MHEGYGYTSDHYRIQRPQNSQDNYGRAVIRVKKELQQSELPPNCSVQPWASRKFGTKQCNADPKCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQAVRRTSAGDKRGRTTSTLPELPSFASHPAAEAISVPSGSSASTSMDTLVSTCELDCSARKRKALNETEPPERGLEAMCIDEKFEDFHTHDSVRPDPGSGGSRALSVASFIQQEPPSMEMEEKFASRSRHTQHSKRARSFGGQGGGLGGAGESHAGFAAMAQAAGIGGQQRSRVGDLVAFNQSLPFSIVMTDGMKAPPPAS 391
BLAST of EWM25474.1 vs. NCBI_GenBank
Match: gi|553184306|ref|XP_005854067.1| (ubiquitin-conjugating enzyme e2 8, partial [Nannochloropsis gaditana CCMP526] >gi|422294993|gb|EKU22292.1| ubiquitin-conjugating enzyme e2 8, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 813.142 bits (2099), Expect = 0.000e+0 Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0
Query: 1 MHEGYGYTSDHYRIQRPQNSQDNYGRAVIRVKKELQQSELPPNCSVQPWASRKFGTKQCNADPKCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQAVRRTSAGDKRGRTTSTLPELPSFASHPAAEAISVPSGSSASTSMDTLVSTCELDCSARKRKALNETEPPERGLEAMCIDEKFEDFHTHDSVRPDPGSGGSRALSVASFIQQEPPSMEMEEKFASRSRHTQHSKRARSFGGQGGGLGGAGESHAGFAAMAQAAGIGGQQRSRVGDLVAFNQSLPFSIVMTDGMKAPPPAS 391
MHEGYGYTSDHYRIQRPQNSQDNYGRAVIRVKKELQQSELPPNCSVQPWASRKFGTKQCNADPKCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQAVRRTSAGDKRGRTTSTLPELPSFASHPAAEAISVPSGSSASTSMDTLVSTCELDCSARKRKALNETEPPERGLEAMCIDEKFEDFHTHDSVRPDPGSGGSRALSVASFIQQEPPSMEMEEKFASRSRHTQHSKRARSFGGQGGGLGGAGESHAGFAAMAQAAGIGGQQRSRVGDLVAFNQSLPFSIVMTDGMKAPPPAS
Sbjct: 62 MHEGYGYTSDHYRIQRPQNSQDNYGRAVIRVKKELQQSELPPNCSVQPWASRKFGTKQCNADPKCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQAVRRTSAGDKRGRTTSTLPELPSFASHPAAEAISVPSGSSASTSMDTLVSTCELDCSARKRKALNETEPPERGLEAMCIDEKFEDFHTHDSVRPDPGSGGSRALSVASFIQQEPPSMEMEEKFASRSRHTQHSKRARSFGGQGGGLGGAGESHAGFAAMAQAAGIGGQQRSRVGDLVAFNQSLPFSIVMTDGMKAPPPAS 452
BLAST of EWM25474.1 vs. NCBI_GenBank
Match: gi|299472637|emb|CBN78289.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 102.064 bits (253), Expect = 9.323e-22 Identity = 47/101 (46.53%), Postives = 59/101 (58.42%), Query Frame = 0
Query: 90 FEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKG 190
FEG F L +PPSYPF P V C S WHPN+ TG V LPI+ +DWRP LS++T++F + L +E AVN AA A + DL+ Q R L G
Sbjct: 56 FEGATFYFILTIPPSYPFHAPTVVCTSRAWHPNIDLHTGLVSLPILTKDWRPVLSINTVVFALQLMFIEPTEHYAVNKPAAAALSSNPDLFREQVRRSLAG 156
BLAST of EWM25474.1 vs. NCBI_GenBank
Match: gi|1173946279|gb|OQR94826.1| (ubiquitin-conjugating enzyme E2 [Achlya hypogyna]) HSP 1 Score: 99.3673 bits (246), Expect = 1.437e-20 Identity = 43/101 (42.57%), Postives = 64/101 (63.37%), Query Frame = 0
Query: 97 FELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHH-------TDLYHAQAREMLKG 190
F +E+P SYPF PP V WHPN+ TG+V+ I+G+DWRP LS++T++ G+ L LE +VD +N+AAA ++H+ DLY+ +E L+G
Sbjct: 65 FHIEIPKSYPFHPPVVFSMDRVWHPNIDLHTGRVMFAILGKDWRPVLSINTILLGLQLIFLEPSVDFRLNTAAANTFLHNPVAFRKEVDLYNEAVQETLRG 165
BLAST of EWM25474.1 vs. NCBI_GenBank
Match: gi|532047956|ref|XP_005366757.1| (PREDICTED: ubiquitin-conjugating enzyme E2 2-like [Microtus ochrogaster]) HSP 1 Score: 97.0561 bits (240), Expect = 1.444e-20 Identity = 48/132 (36.36%), Postives = 77/132 (58.33%), Query Frame = 0
Query: 64 KCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDL--YHAQAREMLKGQAV 193
+CS PV + + HW+ T++GP++SP+EG + P +YPFKPP+++ + +HPN+ G + L I+G +W PT+++S ++ IH L N D+ + A+ Y HTDL Y ARE K A+
Sbjct: 28 QCSAGPVA-ENMFHWKATIMGPKDSPYEGGVFFLNIHFPTTYPFKPPKISFITQIYHPNI-DQNGSIFLDILGSEWSPTITVSEVLLSIHSLLCNPNPDLPLVPEIAKVY--HTDLKQYEKLAREWTKKYAM 155
BLAST of EWM25474.1 vs. NCBI_GenBank
Match: gi|673048537|ref|XP_008878229.1| (hypothetical protein H310_12806 [Aphanomyces invadans] >gi|574466175|gb|ETV93207.1| hypothetical protein H310_12806 [Aphanomyces invadans]) HSP 1 Score: 98.5969 bits (244), Expect = 3.397e-20 Identity = 50/153 (32.68%), Postives = 81/153 (52.94%), Query Frame = 0
Query: 48 PWASRKFGTKQCNADPKCSNAPVDFQ------KLLHWQVTM-LGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQAV 193
P+ RK + CS+A + +LH +++ +G +SP+ F+ ++P +YPF P V WHPN+ +TGQV+ I+G DWRP LS++T++ G+ L LE +++ AVN AA V+ L+ Q + L G A+
Sbjct: 23 PFRVRKDLNELAKGRFVCSHATTQIEFPDGTGNILHILISISVGDVDSPYANGDFRFQFDIPRTYPFHAPVVKSLDKIWHPNIDINTGQVMFSILGNDWRPVLSINTILLGLQLIFLEPSIEFAVNQVAATTLVNDPQLFRRQVQHTLCGGAI 175
BLAST of EWM25474.1 vs. NCBI_GenBank
Match: gi|698796842|ref|XP_009831450.1| (hypothetical protein H257_07575 [Aphanomyces astaci] >gi|574113241|gb|ETV78731.1| hypothetical protein H257_07575 [Aphanomyces astaci]) HSP 1 Score: 97.4413 bits (241), Expect = 6.873e-20 Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 0
Query: 83 LGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKG 190
+G +SP+ F+ ++P +YPF P V + WHPN+ +GQV+ I+G+DWRP LS++T++ G+ L LE ++D A+N AA+ V + L+ Q + L+G
Sbjct: 51 VGDIDSPYANGDFQFQFDIPRTYPFHAPLVYSLNKVWHPNIDIHSGQVMFSILGKDWRPVLSINTILLGLQLIFLEPSIDFAINPVAAKTLVENAQLFRRQVQHTLQG 158
BLAST of EWM25474.1 vs. NCBI_GenBank
Match: gi|301106270|ref|XP_002902218.1| (ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4] >gi|262098838|gb|EEY56890.1| ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4]) HSP 1 Score: 96.2857 bits (238), Expect = 2.082e-19 Identity = 60/216 (27.78%), Postives = 106/216 (49.07%), Query Frame = 0
Query: 27 AVIRVKKELQQSELPPNCSVQPWASRKFGTKQCNADPKCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKG--------------QAVRRTSAG--DKRGRTTSTLPELPSFASHPAAEAISV 226
A +RV+K++ + A KF Q + + + KL+ + ++++ PF F +++P +YPF P V C + WHPN+ +TG+V++PI+G+DWRP LS++T++ G+ L LE +D +N AAAE + + + + + +L G +RR S G KR R + E +S A++A+ +
Sbjct: 8 AALRVRKDVNEL-----------AKAKFTCAQARTRVEFPDGANNMLKLI-FTISIMD-LSGPFANGDFTFFVDIPKTYPFHAPSVRCLTRVWHPNIDIATGEVMMPILGKDWRPVLSINTVLLGLQLIFLEPGIDYVLNPAAAEQLHRNPEQFKKEVQHILCGGRFYGVDFLAHPRQLEMRRQSWGLRAKRPRDDESSSEWDGMSSPSASDAVGI 210
BLAST of EWM25474.1 vs. NCBI_GenBank
Match: gi|922857695|gb|KOO25910.1| (ubiquitin conjugating enzyme [Chrysochromulina sp. CCMP291]) HSP 1 Score: 93.5893 bits (231), Expect = 2.315e-19 Identity = 50/128 (39.06%), Postives = 66/128 (51.56%), Query Frame = 0
Query: 65 CSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQA 192
CS PV L HWQ T++GP +SPF+G ++ PP YPFKPP+V + +HPNV S G + L I+ W P L+ S +I I L +AN D + A Y Y A ARE + A
Sbjct: 21 CSAGPVG-DDLFHWQATIMGPGDSPFQGGIFFLDIHFPPDYPFKPPKVQFQTKIYHPNV-NSNGSICLDILNAQWSPALTTSKVILSICSLLTDANPDDPLVPEIARIYKEDRAKYDATAREWTQKYA 146
BLAST of EWM25474.1 vs. NCBI_GenBank
Match: gi|1208527249|gb|OWM81119.1| (hypothetical protein CDL15_Pgr007150 [Punica granatum]) HSP 1 Score: 93.5893 bits (231), Expect = 2.330e-19 Identity = 51/139 (36.69%), Postives = 71/139 (51.08%), Query Frame = 0
Query: 57 KQCNADP--KCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQAV 193
K DP CS PV + HWQ T++GP ESPF G L + PP YPFKPP+V+ + +HPN+ S G + L I+ E W P L++S ++ I L + N D + A Y H Y + AR + A+
Sbjct: 11 KDLQKDPPISCSAGPVS-DDMFHWQATIMGPAESPFAGGVFLVSIHFPPDYPFKPPKVSFRTKVFHPNI-NSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKHDRAKYESTARSWTQKYAM 147 The following BLAST results are available for this feature:
BLAST of EWM25474.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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