EWM25474.1, cds5200 (CDS) Nannochloropsis gaditana

Overview
NameEWM25474.1
Unique Namecds5200
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:436281..437456 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25474.1
Productubiquitin-conjugating enzyme e2-17 kda
Orig transcript idgnl|cribi|Naga_100207g3.9440.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:436281..437456 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2
Homology
BLAST of EWM25474.1 vs. NCBI_GenBank
Match: gi|585107237|gb|EWM25474.1| (ubiquitin-conjugating enzyme e2-17 kda [Nannochloropsis gaditana])

HSP 1 Score: 813.527 bits (2100), Expect = 0.000e+0
Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0
Query:    1 MHEGYGYTSDHYRIQRPQNSQDNYGRAVIRVKKELQQSELPPNCSVQPWASRKFGTKQCNADPKCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQAVRRTSAGDKRGRTTSTLPELPSFASHPAAEAISVPSGSSASTSMDTLVSTCELDCSARKRKALNETEPPERGLEAMCIDEKFEDFHTHDSVRPDPGSGGSRALSVASFIQQEPPSMEMEEKFASRSRHTQHSKRARSFGGQGGGLGGAGESHAGFAAMAQAAGIGGQQRSRVGDLVAFNQSLPFSIVMTDGMKAPPPAS 391
            MHEGYGYTSDHYRIQRPQNSQDNYGRAVIRVKKELQQSELPPNCSVQPWASRKFGTKQCNADPKCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQAVRRTSAGDKRGRTTSTLPELPSFASHPAAEAISVPSGSSASTSMDTLVSTCELDCSARKRKALNETEPPERGLEAMCIDEKFEDFHTHDSVRPDPGSGGSRALSVASFIQQEPPSMEMEEKFASRSRHTQHSKRARSFGGQGGGLGGAGESHAGFAAMAQAAGIGGQQRSRVGDLVAFNQSLPFSIVMTDGMKAPPPAS
Sbjct:    1 MHEGYGYTSDHYRIQRPQNSQDNYGRAVIRVKKELQQSELPPNCSVQPWASRKFGTKQCNADPKCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQAVRRTSAGDKRGRTTSTLPELPSFASHPAAEAISVPSGSSASTSMDTLVSTCELDCSARKRKALNETEPPERGLEAMCIDEKFEDFHTHDSVRPDPGSGGSRALSVASFIQQEPPSMEMEEKFASRSRHTQHSKRARSFGGQGGGLGGAGESHAGFAAMAQAAGIGGQQRSRVGDLVAFNQSLPFSIVMTDGMKAPPPAS 391          
BLAST of EWM25474.1 vs. NCBI_GenBank
Match: gi|553184306|ref|XP_005854067.1| (ubiquitin-conjugating enzyme e2 8, partial [Nannochloropsis gaditana CCMP526] >gi|422294993|gb|EKU22292.1| ubiquitin-conjugating enzyme e2 8, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 813.142 bits (2099), Expect = 0.000e+0
Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0
Query:    1 MHEGYGYTSDHYRIQRPQNSQDNYGRAVIRVKKELQQSELPPNCSVQPWASRKFGTKQCNADPKCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQAVRRTSAGDKRGRTTSTLPELPSFASHPAAEAISVPSGSSASTSMDTLVSTCELDCSARKRKALNETEPPERGLEAMCIDEKFEDFHTHDSVRPDPGSGGSRALSVASFIQQEPPSMEMEEKFASRSRHTQHSKRARSFGGQGGGLGGAGESHAGFAAMAQAAGIGGQQRSRVGDLVAFNQSLPFSIVMTDGMKAPPPAS 391
            MHEGYGYTSDHYRIQRPQNSQDNYGRAVIRVKKELQQSELPPNCSVQPWASRKFGTKQCNADPKCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQAVRRTSAGDKRGRTTSTLPELPSFASHPAAEAISVPSGSSASTSMDTLVSTCELDCSARKRKALNETEPPERGLEAMCIDEKFEDFHTHDSVRPDPGSGGSRALSVASFIQQEPPSMEMEEKFASRSRHTQHSKRARSFGGQGGGLGGAGESHAGFAAMAQAAGIGGQQRSRVGDLVAFNQSLPFSIVMTDGMKAPPPAS
Sbjct:   62 MHEGYGYTSDHYRIQRPQNSQDNYGRAVIRVKKELQQSELPPNCSVQPWASRKFGTKQCNADPKCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQAVRRTSAGDKRGRTTSTLPELPSFASHPAAEAISVPSGSSASTSMDTLVSTCELDCSARKRKALNETEPPERGLEAMCIDEKFEDFHTHDSVRPDPGSGGSRALSVASFIQQEPPSMEMEEKFASRSRHTQHSKRARSFGGQGGGLGGAGESHAGFAAMAQAAGIGGQQRSRVGDLVAFNQSLPFSIVMTDGMKAPPPAS 452          
BLAST of EWM25474.1 vs. NCBI_GenBank
Match: gi|299472637|emb|CBN78289.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 102.064 bits (253), Expect = 9.323e-22
Identity = 47/101 (46.53%), Postives = 59/101 (58.42%), Query Frame = 0
Query:   90 FEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKG 190
            FEG    F L +PPSYPF  P V C S  WHPN+   TG V LPI+ +DWRP LS++T++F + L  +E     AVN  AA A   + DL+  Q R  L G
Sbjct:   56 FEGATFYFILTIPPSYPFHAPTVVCTSRAWHPNIDLHTGLVSLPILTKDWRPVLSINTVVFALQLMFIEPTEHYAVNKPAAAALSSNPDLFREQVRRSLAG 156          
BLAST of EWM25474.1 vs. NCBI_GenBank
Match: gi|1173946279|gb|OQR94826.1| (ubiquitin-conjugating enzyme E2 [Achlya hypogyna])

HSP 1 Score: 99.3673 bits (246), Expect = 1.437e-20
Identity = 43/101 (42.57%), Postives = 64/101 (63.37%), Query Frame = 0
Query:   97 FELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHH-------TDLYHAQAREMLKG 190
            F +E+P SYPF PP V      WHPN+   TG+V+  I+G+DWRP LS++T++ G+ L  LE +VD  +N+AAA  ++H+        DLY+   +E L+G
Sbjct:   65 FHIEIPKSYPFHPPVVFSMDRVWHPNIDLHTGRVMFAILGKDWRPVLSINTILLGLQLIFLEPSVDFRLNTAAANTFLHNPVAFRKEVDLYNEAVQETLRG 165          
BLAST of EWM25474.1 vs. NCBI_GenBank
Match: gi|532047956|ref|XP_005366757.1| (PREDICTED: ubiquitin-conjugating enzyme E2 2-like [Microtus ochrogaster])

HSP 1 Score: 97.0561 bits (240), Expect = 1.444e-20
Identity = 48/132 (36.36%), Postives = 77/132 (58.33%), Query Frame = 0
Query:   64 KCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDL--YHAQAREMLKGQAV 193
            +CS  PV  + + HW+ T++GP++SP+EG      +  P +YPFKPP+++  +  +HPN+    G + L I+G +W PT+++S ++  IH  L   N D+ +    A+ Y  HTDL  Y   ARE  K  A+
Sbjct:   28 QCSAGPVA-ENMFHWKATIMGPKDSPYEGGVFFLNIHFPTTYPFKPPKISFITQIYHPNI-DQNGSIFLDILGSEWSPTITVSEVLLSIHSLLCNPNPDLPLVPEIAKVY--HTDLKQYEKLAREWTKKYAM 155          
BLAST of EWM25474.1 vs. NCBI_GenBank
Match: gi|673048537|ref|XP_008878229.1| (hypothetical protein H310_12806 [Aphanomyces invadans] >gi|574466175|gb|ETV93207.1| hypothetical protein H310_12806 [Aphanomyces invadans])

HSP 1 Score: 98.5969 bits (244), Expect = 3.397e-20
Identity = 50/153 (32.68%), Postives = 81/153 (52.94%), Query Frame = 0
Query:   48 PWASRKFGTKQCNADPKCSNAPVDFQ------KLLHWQVTM-LGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQAV 193
            P+  RK   +       CS+A    +       +LH  +++ +G  +SP+      F+ ++P +YPF  P V      WHPN+  +TGQV+  I+G DWRP LS++T++ G+ L  LE +++ AVN  AA   V+   L+  Q +  L G A+
Sbjct:   23 PFRVRKDLNELAKGRFVCSHATTQIEFPDGTGNILHILISISVGDVDSPYANGDFRFQFDIPRTYPFHAPVVKSLDKIWHPNIDINTGQVMFSILGNDWRPVLSINTILLGLQLIFLEPSIEFAVNQVAATTLVNDPQLFRRQVQHTLCGGAI 175          
BLAST of EWM25474.1 vs. NCBI_GenBank
Match: gi|698796842|ref|XP_009831450.1| (hypothetical protein H257_07575 [Aphanomyces astaci] >gi|574113241|gb|ETV78731.1| hypothetical protein H257_07575 [Aphanomyces astaci])

HSP 1 Score: 97.4413 bits (241), Expect = 6.873e-20
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 0
Query:   83 LGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKG 190
            +G  +SP+      F+ ++P +YPF  P V   +  WHPN+   +GQV+  I+G+DWRP LS++T++ G+ L  LE ++D A+N  AA+  V +  L+  Q +  L+G
Sbjct:   51 VGDIDSPYANGDFQFQFDIPRTYPFHAPLVYSLNKVWHPNIDIHSGQVMFSILGKDWRPVLSINTILLGLQLIFLEPSIDFAINPVAAKTLVENAQLFRRQVQHTLQG 158          
BLAST of EWM25474.1 vs. NCBI_GenBank
Match: gi|301106270|ref|XP_002902218.1| (ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4] >gi|262098838|gb|EEY56890.1| ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4])

HSP 1 Score: 96.2857 bits (238), Expect = 2.082e-19
Identity = 60/216 (27.78%), Postives = 106/216 (49.07%), Query Frame = 0
Query:   27 AVIRVKKELQQSELPPNCSVQPWASRKFGTKQCNADPKCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKG--------------QAVRRTSAG--DKRGRTTSTLPELPSFASHPAAEAISV 226
            A +RV+K++ +            A  KF   Q     +  +   +  KL+ + ++++     PF      F +++P +YPF  P V C +  WHPN+  +TG+V++PI+G+DWRP LS++T++ G+ L  LE  +D  +N AAAE    + + +  + + +L G                +RR S G   KR R   +  E    +S  A++A+ +
Sbjct:    8 AALRVRKDVNEL-----------AKAKFTCAQARTRVEFPDGANNMLKLI-FTISIMD-LSGPFANGDFTFFVDIPKTYPFHAPSVRCLTRVWHPNIDIATGEVMMPILGKDWRPVLSINTVLLGLQLIFLEPGIDYVLNPAAAEQLHRNPEQFKKEVQHILCGGRFYGVDFLAHPRQLEMRRQSWGLRAKRPRDDESSSEWDGMSSPSASDAVGI 210          
BLAST of EWM25474.1 vs. NCBI_GenBank
Match: gi|922857695|gb|KOO25910.1| (ubiquitin conjugating enzyme [Chrysochromulina sp. CCMP291])

HSP 1 Score: 93.5893 bits (231), Expect = 2.315e-19
Identity = 50/128 (39.06%), Postives = 66/128 (51.56%), Query Frame = 0
Query:   65 CSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQA 192
            CS  PV    L HWQ T++GP +SPF+G     ++  PP YPFKPP+V   +  +HPNV  S G + L I+   W P L+ S +I  I   L +AN D  +    A  Y      Y A ARE  +  A
Sbjct:   21 CSAGPVG-DDLFHWQATIMGPGDSPFQGGIFFLDIHFPPDYPFKPPKVQFQTKIYHPNV-NSNGSICLDILNAQWSPALTTSKVILSICSLLTDANPDDPLVPEIARIYKEDRAKYDATAREWTQKYA 146          
BLAST of EWM25474.1 vs. NCBI_GenBank
Match: gi|1208527249|gb|OWM81119.1| (hypothetical protein CDL15_Pgr007150 [Punica granatum])

HSP 1 Score: 93.5893 bits (231), Expect = 2.330e-19
Identity = 51/139 (36.69%), Postives = 71/139 (51.08%), Query Frame = 0
Query:   57 KQCNADP--KCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQAV 193
            K    DP   CS  PV    + HWQ T++GP ESPF G   L  +  PP YPFKPP+V+  +  +HPN+  S G + L I+ E W P L++S ++  I   L + N D  +    A  Y H    Y + AR   +  A+
Sbjct:   11 KDLQKDPPISCSAGPVS-DDMFHWQATIMGPAESPFAGGVFLVSIHFPPDYPFKPPKVSFRTKVFHPNI-NSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKHDRAKYESTARSWTQKYAM 147          
The following BLAST results are available for this feature:
BLAST of EWM25474.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107237|gb|EWM25474.1|0.000e+0100.00ubiquitin-conjugating enzyme e2-17 kda [Nannochlor... [more]
gi|553184306|ref|XP_005854067.1|0.000e+0100.00ubiquitin-conjugating enzyme e2 8, partial [Nannoc... [more]
gi|299472637|emb|CBN78289.1|9.323e-2246.53conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173946279|gb|OQR94826.1|1.437e-2042.57ubiquitin-conjugating enzyme E2 [Achlya hypogyna][more]
gi|532047956|ref|XP_005366757.1|1.444e-2036.36PREDICTED: ubiquitin-conjugating enzyme E2 2-like ... [more]
gi|673048537|ref|XP_008878229.1|3.397e-2032.68hypothetical protein H310_12806 [Aphanomyces invad... [more]
gi|698796842|ref|XP_009831450.1|6.873e-2037.04hypothetical protein H257_07575 [Aphanomyces astac... [more]
gi|301106270|ref|XP_002902218.1|2.082e-1927.78ubiquitin-conjugating enzyme E2, putative [Phytoph... [more]
gi|922857695|gb|KOO25910.1|2.315e-1939.06ubiquitin conjugating enzyme [Chrysochromulina sp.... [more]
gi|1208527249|gb|OWM81119.1|2.330e-1936.69hypothetical protein CDL15_Pgr007150 [Punica grana... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5212rna5212Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications