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Properties
| Property Name | Value |
|---|
| Product | swib mdm2 domain containing protein |
| Orig transcript id | gnl|cribi|Naga_100583g1.5692.mrna |
| Orig protein id | gnl|cribi|Naga_100583g1.5692 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:415022..416691 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5204 ID=rna5204|Name=rna5204|organism=Nannochloropsis gaditana|type=mRNA|length=1385bp
AGACCCAGGAGAGACGATAAATATATATTTGGTCCTCTGTGTATCACCTT
GTCTGCAGTACTGAACTCTTTACAGCACATTTACGTATTCCTGAAGGCAG
GCAGGGTGATTGTCGTCGTACTTGTGTTGTTTTGGGTGTTTTCAAAGCCT
TAATACGTGTCCACTCGACAGGAAAGAGATGGCAGGTCCGTCAACATCAG
TTACAACCTACAACGCAAAAAAGAGGAAGCCCGCAGGATGCATCGAGGAG
ACCCCAATAATCCAAAGATTGCTCGGGAGCAACAGTGCCTGGCTCAGGAT
CTGGAATGAGGACATTGAGGGGGAGGACATCGACTCGGAAATCGCCTTCA
GTCCCCAGGGGAGGTATGCTGCCGTCAGCCTGCAAGGTGGCAGCGTGCTC
ATTTGGGACTTGAGCACCCTTCCTCACGTAGTCCTGCGCTTGGACTTGCC
CCCACACATGCCTTTGCAGACGCAGGCTACAGTGCCACGTCGGAGCAGTA
AGAGCAGGGGCCGGGGTGGTCGAGGGAGGGGGCGCGGCGGCGGGAGCTCA
GGGGACAGGGCTGTTGAAAACGACGTAGAATACGTGGTGGTGGGGTTGAG
TTGGTCCAGCCGGGCTCACAAGCTCCTAGTCACGTACCATCAACGAGGCG
GAGGAAGTGCTTCCTCCTCCTACCTGTGTCTGTGGCATCTGCCCTCGGCT
GCGGTGGAGGGACATGCCTACTTCCCCGACTGTCTCATCGGGCCCGCCCA
GCTCTCCCCGGTGGACGATTCCCTCTGCGCGTACTTCCTATCGGGTTCCG
TCTGTCTTCGTCTGCAGCACTTGCGCGGTTCGCAGCCAGCGCAGGAGGGC
CGGGAGGTGCTCCTAAGCCCGTCCAGGGAGGGCGCCGGCGGGACCCTGGG
GAGTGGGGATGGCCACCGTCTCGGTCTGTGTGCCTTTGGTCGCGACGGGA
GAAGCCTGTTCTGCGTGAGCGCGCGGGAGAGGCGCGTGTTCAAGGTGGAC
ACAGACTCTCTGGCCGTACTGGCCCGAAGCCCGGAGATCCTGGCGGGCGC
CAAGCTGGTGGTGCTCAAGACGCTTATGTCCCGGGACGGGAGCTGTCTCT
TCGTCTTCAGCAACCGCGCGGCGCACCTGTTGGAGACGCACGGCCTGCGA
GCCGCGGAGGCCGTGGGAGACTTCGGCGCCATCAAGGTGGAGTGGGGGTG
CTGGAGTGTGGGACCGAGTCGGAACCTGGGGCCGGGGGAGGGGGGGGGGC
GGAGGAGGAGAGGAGGGACTTGGAACAGCTGGTGGTGGTGGGTGTCCCCT
GTCCCTTCAGCCGCGACAGCGTGCAGGAGCGGTTGTTCGTTTGGCGGGTC
CGGCGCTTGGGCAGCGGCCTGAACGGGCGCGGCGG back to topprotein sequence of rna5204 >rna5204-protein ID=rna5204-protein|Name=rna5204|organism=Nannochloropsis gaditana|type=polypeptide|length=338bp
MAASPPSASALEDAIRSILETAKLEEVTQRTLREQLAGQFGCDLTDEKAL
IKELTIQVLSERQEREEAEASRQPAGDGEASVKVEGALGLVPSDDESRDD
SSSSSDSEEERKVKKKIAGRKKEKSRGEEKKKGGGFNKEYAWSEEMAAFL
GEGYMSRPQVTKRMWEYIKTQGLQKPEDRRVILCDERLQRLFSVPSLNMF
KLPVMINKHMRQDDREEGADEGREKQEGGEVGKKERASTKPRNPKRKKTG
EAGTPAKRGGFPPEKISVQLQGLMGKATASRNEVVKEIWTHVKSHNLQDP
ANRMMISCDATLKGILGVDACHGFGISKLLTPHFLGRA back to topmRNA from alignment at CM002465.1:415022..416691+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5204 ID=rna5204|Name=rna5204|organism=Nannochloropsis gaditana|type=mRNA|length=1670bp|location=Sequence derived from alignment at CM002465.1:415022..416691+ (Nannochloropsis gaditana)
ACACTTTCCATTCccacgggggaggacgcgcgaATCTTCTCTCTTCGATG
CCCTCACCCACACAGTACTTGCACGTTCCTCGAAAGAATTCGGCCattct
tttttcccattGATCTGCTTCCTTGACCTTTTTGACATCGAGAACGTGCC
ATCCCAGTACGGTAGCCTAGTAATGGCAGCCTCCCCGCCGAGTGCCTCCG
CGCTGGAGGACGCCATTCGCAGTATATTGGAGACCgccaagctggaggag
gtgacacAGCGCACGCTACGAGAACAGGTTTGTCGACTCGGGTGTATTTA
GTAGTGGGTTGGTTGATGCTGTACCCGACAAGGCTAGGTGATATaagagg
cgaaggactcAACCTCATGCGAATTCACGCTCCCTCGTTACCTTCGAAAA
AGCTGGCAGGCCAATTTGGTTGTGATTTGACCGATGAAAAGGCCTTGATC
AAAGAACTTACCATCCAAGTGCTCTCGGAGCgacaagaaagggaggaagc
agaggcaaGCAGACAACCTgcaggagatggggaggcCAGCGTAAAGGTTG
AGGGGGCTCTAGGGCTGGTACCAAGCGATGATGAAAGTCGCGACGACAGT
AGTAGCAGCAGTGatagcgaggaggagaggaaagtaaagaagaaaatagc
cgggaggaagaaggagaagagcaggggggaggaaaagaaaaaagggggtg
GATTTAATAAGGAATACGCGTGgtcggaggagatggcggctTTCCTGGGC
GAGGGCTACATGTCCCGCCCACAGGTGACGAAGCGTATGTGGGAGTATAT
CAAGACCCAGGGTTTGCAGAAGCCAGAGGATCGCCGGGTCATCCTCTGCG
ACGAGCGGCTCCAGCGTCTCTTCTCGGTGCCCTCCCTGAACATGTTCAAG
CTGCCCGTGATGATCAACAAGCACATGCGTCAGGAcgacagagaggaggg
ggcagacgagggacgggaaaagcaggagggcggggaggtggggaagaagg
aaagagcgtCCACGAAGCCGAGGAATccgaagcggaagaagacgggggag
gccggcacGCCCGCCAAGAGGGGGGGCTTCCCTCCGGAGAAAATCTCGGT
CCAGCTGCAGGGACTGATGGGCAAGGCGACGGCCTCGCGGaacgaggtgg
tgaaggagatTTGGACGCACGTGAAGAGCCACAACCTCCAGGACCCAGCG
GTGAGTGTTCGTgagccctctctcccccgcgccctccagccctcactctc
ctcgctcgcctcctctctccgcgTGCTCACGgctctcctccgtcttccca
ccctccacgTGAGGCAGAACAGGATGATGATCTCCTGCGACGCCACCCTC
AAGGGCATCCTCGGCGTGGACGCCTGCCACGGCTTTGGGATCAGCAAGCT
CCTGACGCCTCACTTTTTGGGCCGTGCCTAGTCcggccggggaggtgggg
gacgaggacagcCCCCCCTCGACGTGGCTTCCTAGGCTAGAtcgagagga
ggcagggaggacgggagggaggaagggagggagggaggggggggggggga
cgccgGTGCTGCGCGGCTGTccgcaggggaaggaaaaagaggagagggcg
gtcGCATGCGTGGTTCTGTAGGTAAGCCGGTGGGACCGAAGGAATTGACA
AAGGAATCGACTGTAAGGAA back to topCoding sequence (CDS) from alignment at CM002465.1:415022..416691+ >rna5204 ID=rna5204|Name=rna5204|organism=Nannochloropsis gaditana|type=CDS|length=3051bp|location=Sequence derived from alignment at CM002465.1:415022..416691+ (Nannochloropsis gaditana)
ATGGCAGCCTCCCCGCCGAGTGCCTCCGCGCTGGAGGACGCCATTCGCAG
TATATTGGAGACCgccaagctggaggaggtgacacAGCGCACGCTACGAG
AACAGCTGGCAGGCCAATTTGGTTGTGATTTGACCGATGAAAAGGCCTTG
ATCAAAGAACTTACCATCCAAGTGCTCTCGGAGCgacaagaaagggagga
agcagaggcaaGCAGACAACCTgcaggagatggggaggcCAGCGTAAAGG
TTGAGGGGGCTCTAGGGCTGGTACCAAGCGATGATGAAAGTCGCGACGAC
AGTAGTAGCAGCAGTGatagcgaggaggagaggaaagtaaagaagaaaat
agccgggaggaagaaggagaagagcaggggggaggaaaagaaaaaagggg
gtgGATTTAATAAGGAATACGCGTGgtcggaggagatggcggctTTCCTG
GGCGAGGGCTACATGTCCCGCCCACAGGTGACGAAGCGTATGTGGGAGTA
TATCAAGACCCAGGGTTTGCAGAAGCCAGAGGATCGCCGGGTCATCCTCT
GCGACGAGCGGCTCCAGCGTCTCTTCTCGGTGCCCTCCCTGAACATGTTC
AAGCTGCCCGTGATGATCAACAAGCACATGCGTCAGGAcgacagagagga
gggggcagacgagggacgggaaaagcaggagggcggggaggtggggaaga
aggaaagagcgtCCACGAAGCCGAGGAATccgaagcggaagaagacgggg
gaggccggcacGCCCGCCAAGAGGGGGGGCTTCCCTCCGGAGAAAATCTC
GGTCCAGCTGCAGGGACTGATGGGCAAGGCGACGGCCTCGCGGaacgagg
tggtgaaggagatTTGGACGCACGTGAAGAGCCACAACCTCCAGGACCCA
GCGAACAGGATGATGATCTCCTGCGACGCCACCCTCAAGGGCATCCTCGG
CGTGGACGCCTGCCACGGCTTTGGGATCAGCAAGCTCCTGACGCCTCACT
TTTTGGGCCGTGCCTAGATGGCAGCCTCCCCGCCGAGTGCCTCCGCGCTG
GAGGACGCCATTCGCAGTATATTGGAGACCgccaagctggaggaggtgac
acAGCGCACGCTACGAGAACAGCTGGCAGGCCAATTTGGTTGTGATTTGA
CCGATGAAAAGGCCTTGATCAAAGAACTTACCATCCAAGTGCTCTCGGAG
CgacaagaaagggaggaagcagaggcaaGCAGACAACCTgcaggagatgg
ggaggcCAGCGTAAAGGTTGAGGGGGCTCTAGGGCTGGTACCAAGCGATG
ATGAAAGTCGCGACGACAGTAGTAGCAGCAGTGatagcgaggaggagagg
aaagtaaagaagaaaatagccgggaggaagaaggagaagagcagggggga
ggaaaagaaaaaagggggtgGATTTAATAAGGAATACGCGTGgtcggagg
agatggcggctTTCCTGGGCGAGGGCTACATGTCCCGCCCACAGGTGACG
AAGCGTATGTGGGAGTATATCAAGACCCAGGGTTTGCAGAAGCCAGAGGA
TCGCCGGGTCATCCTCTGCGACGAGCGGCTCCAGCGTCTCTTCTCGGTGC
CCTCCCTGAACATGTTCAAGCTGCCCGTGATGATCAACAAGCACATGCGT
CAGGAcgacagagaggagggggcagacgagggacgggaaaagcaggaggg
cggggaggtggggaagaaggaaagagcgtCCACGAAGCCGAGGAATccga
agcggaagaagacgggggaggccggcacGCCCGCCAAGAGGGGGGGCTTC
CCTCCGGAGAAAATCTCGGTCCAGCTGCAGGGACTGATGGGCAAGGCGAC
GGCCTCGCGGaacgaggtggtgaaggagatTTGGACGCACGTGAAGAGCC
ACAACCTCCAGGACCCAGCGAACAGGATGATGATCTCCTGCGACGCCACC
CTCAAGGGCATCCTCGGCGTGGACGCCTGCCACGGCTTTGGGATCAGCAA
GCTCCTGACGCCTCACTTTTTGGGCCGTGCCTAGATGGCAGCCTCCCCGC
CGAGTGCCTCCGCGCTGGAGGACGCCATTCGCAGTATATTGGAGACCgcc
aagctggaggaggtgacacAGCGCACGCTACGAGAACAGCTGGCAGGCCA
ATTTGGTTGTGATTTGACCGATGAAAAGGCCTTGATCAAAGAACTTACCA
TCCAAGTGCTCTCGGAGCgacaagaaagggaggaagcagaggcaaGCAGA
CAACCTgcaggagatggggaggcCAGCGTAAAGGTTGAGGGGGCTCTAGG
GCTGGTACCAAGCGATGATGAAAGTCGCGACGACAGTAGTAGCAGCAGTG
atagcgaggaggagaggaaagtaaagaagaaaatagccgggaggaagaag
gagaagagcaggggggaggaaaagaaaaaagggggtgGATTTAATAAGGA
ATACGCGTGgtcggaggagatggcggctTTCCTGGGCGAGGGCTACATGT
CCCGCCCACAGGTGACGAAGCGTATGTGGGAGTATATCAAGACCCAGGGT
TTGCAGAAGCCAGAGGATCGCCGGGTCATCCTCTGCGACGAGCGGCTCCA
GCGTCTCTTCTCGGTGCCCTCCCTGAACATGTTCAAGCTGCCCGTGATGA
TCAACAAGCACATGCGTCAGGAcgacagagaggagggggcagacgaggga
cgggaaaagcaggagggcggggaggtggggaagaaggaaagagcgtCCAC
GAAGCCGAGGAATccgaagcggaagaagacgggggaggccggcacGCCCG
CCAAGAGGGGGGGCTTCCCTCCGGAGAAAATCTCGGTCCAGCTGCAGGGA
CTGATGGGCAAGGCGACGGCCTCGCGGaacgaggtggtgaaggagatTTG
GACGCACGTGAAGAGCCACAACCTCCAGGACCCAGCGAACAGGATGATGA
TCTCCTGCGACGCCACCCTCAAGGGCATCCTCGGCGTGGACGCCTGCCAC
GGCTTTGGGATCAGCAAGCTCCTGACGCCTCACTTTTTGGGCCGTGCCTA
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