rna5202, rna5202 (mRNA) Nannochloropsis gaditana

Overview
Namerna5202
Unique Namerna5202
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1797
Alignment locationCM002465.1:410562..412035 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100583g3.5693.mrna
Orig protein idgnl|cribi|Naga_100583g3.5693
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:410562..412035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100583g3gene5022Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5202rna5202-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25483.1cds5190Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5202 ID=rna5202|Name=rna5202|organism=Nannochloropsis gaditana|type=mRNA|length=1797bp
ATGAGCCCCACCAGGACCGCGTTGCCCGCTGGAGGCATTTCCGGACAGGG
CATGAAAACCATTCAGCAAACGCCAACTCATCATCAAGACTCATTTGAGG
ATGATATATCGAGTAAATTGAATCGGCGAGGATGGTCTACTGAAGAAGAT
GCATGCATTTTGAAGCTGGTCCGCGCGCACGGGACCAAGAATTGGACTGT
TATTGCGCAAGGTCTGGCCGAGAAATTGGGTGGACCAGGCCGTTCTGGGA
AGCAATGTCGCACGCGATGGCTCAACCACTTGAATCCTGATATCAAAAAG
GCACCCTGGACAGCCCAGGAAGAAGCTATCGTGCAGGATGCGCAACAACG
ACTGGGAAATCGATGGGCTATCATCGCCAAACTGCTACCCGGAAGAACGG
ATAACAGCATCAAAAACTACTATTACTCAACTATGAGGAAAAATATGCGC
AGACTTGCAAAATCTCATGGTAAAGATGCGCCGGTTGCGAAAGCGTGCGG
ACCAGCCGGTGCCACGGGCTTGGGGCCGCCTGCGGGGGTTAGAGAAAGCT
CAACAAGAACCGGGAAGAAGGGAGCCTCGTCCAGCGTGGCAACCGCCGCT
GGAGCCTACGATACTCCAGCAAGCTTACAAGTGCAAGACAAATGTGTGCA
CGAGAATGGCCAGTCCAAATCGACGAAACGAGTTCGAACAGGCGTGGGGG
AGAAGGGGAAACGCGGCGCACAAAGCACTAAAAACAAGGCAGAAGTTGTG
ACAGATGACGCCGCCCAATTCTTCATAACGGCAGGATTTAGTCCATATGG
ACAAAACACGGGCTTTGGTTCAGGCTTGCCGGCAGGGGCACCGGCAGGGG
CAGGCATGGGAGGCTATTACGCGGTCGAGTCCCCAGCGGGTCCTCCCTCT
TCCTCCACGGTCGGCCAATCCCTGCACATGCATCGCCTCGCAGAAATGCT
GAACGGGGATAATGCCACCGGGGACTTAGCGTTGGCGTCCCCCATGTCGA
GTAATCGTGCGGGACTCTTGGGCCCTGTGGATGACAACTCTTTCTTCGCC
GAGCAACTGCAGCGTCAAATGTCTAGCAACCATCAGCCGCAGCAGGAGAA
TCATCTCCAGCTCTATCTGCAGCAGCAGCTCGATGAACAGTGGCAGCAAC
ATTTCCAACAGAAACTTGATCAGCAATTACAGCTACAAGAGGAGCAGGGG
CAGCGTTACCAGCAGAGAAGGCAACAAGCAGAGCAAACAGAGGCGCAGTA
CCACCGAGACATTCCCCCCCCGTTCTCTGGCGGCGCGGACCAAGGCTTTC
TCCCCTTCGTCCCCGTACCGAAAAAGCGGCGCTCGCTCTCCCCTTCGGGC
TTTTCGACCGCCGGGCCCTCCCTGAGCTCCGGAGCTTCTCATTTAGGACT
GCAGGTGGACGCGGGCGTGACGGCCACCGCATCCTCAGGCCGCTTCAACA
CGGACGACCTTTCCCCCTACTGCCACTACCGACCCTCTTCCTCCCTGGCC
GCGAACTCGTCCTACCTGGAGAGCTTCCTCGAAGGCAGCCTCACGCCGCA
ATACCACCAGAGCACACGCGACCCCGTGCACAACCCCGCCCCTTTCCTGG
CCCCCCTGCCCCCCCACCCCACCCAGGACGACCCCAGCCAGGGTCTAGCT
CCAGACGGCCCTCGTCGAAGAGATGCCGATTGCCTCGCTCTATATATTTT
GGCGGCTGTCCCGCCACTGGGGGGGACCTCTCTGTTGTCTCTATGGACGA
TGCTCCAGGCCCCTCCCTACTGCGTGCTCTCGTCATGTATCCCATGA
back to top

protein sequence of rna5202

>rna5202-protein ID=rna5202-protein|Name=rna5202|organism=Nannochloropsis gaditana|type=polypeptide|length=316bp
MQQKNKGHTRCGRWSLLSVAGLVGFTVALGMHHTHAFVAPIAPHGLPENL
RVVRHRHQLGSQTCQLVQTPRFWSPFTGQLRGKSGSSRLHARISEKPGDK
QDREEGGEQGLPKVLEEGLPKLTRQQEEAVDLSMGVIPPEQEPLSGEAWT
AEVEKRLQEMYEKGTYDPTPVNLTPKELANQQWVDDFLNKEERPIRFTPE
YWFGTWTRGDIKFSSAGRGLKSFGFALVGIGLVTLMFLLEDELVNPAFDD
YRQWDGNDFFHFGEDLGAWVTAIPARTSDYLSHFNWVEWSARVAARAGAA
PRWQNQLLGLPAIPPQ
back to top

mRNA from alignment at CM002465.1:410562..412035+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5202 ID=rna5202|Name=rna5202|organism=Nannochloropsis gaditana|type=mRNA|length=1474bp|location=Sequence derived from alignment at CM002465.1:410562..412035+ (Nannochloropsis gaditana)
GACCCCTGCCAATTATTAGACCCGTCCCACGGCCATAGATCCCACGTTAT TTGTGTACTCACAAGGCGGTCTCCGCCCTCTTTCGATGCATCTATGCCTA TTGACTTGCTCCTCATGTCGTTCACGGGGGTCGAACTCCGTTTCAAAACA TTACCAGCAGACTCACAGGGTCGTGTCACATAGAGTAACGCGCTCTCAGC CCGGTGGACTGCGTCTTACACGCTAATTGCCGTGTATAGGACGCCTCCAA ATGCAACAAAAGAATAAAGGGCACACAAGATGCGGGAGGTGGTCATTGCT TTCGGTGGCAGGCCTAGTAGGGTTCACCGTAGCCCTAGGAATGCACCACA CGCACGCGTTCGTCGCGCCTATTGCACCCCATGGCCTTCCAGAGAATCTG AGAGTGGTTCGGCACCGACACCAGCTTGGATCGCAGACATGTCAATTGGT GCAGACGCCCCGATTCTGGTCCCCTTTCACAGGACAGCTGAGGGGCAAGA GTGGTAGCAGTCGGTTGCACGCGCGCATTTCGGAGAAGCCAGGGGATAAG CAAGatagagaggaaggcggggagcaaGGCTTGCCGAAGGTTCTAGAAGA AGGTTTACCTAAGCTGACACGACAGcaagaagaggcggtggacctGTCAA TGGGCGTGATACCTCCCGAGCAGGAGCCGCTTTCTGGCGAGGCCTGGAcg gccgaggtggagaaacGGCTGCAGGAGATGTATGAGAAGGGCACGTACGA CCCCACGCCCGTGAATCTGACGCCCAAAGAGCTGGCGAACCAGCAGTGGG TGGACGACTTCCTGAACAAGGAAGAGCGACCCATCCGGTTCACGCCCGAG TACTGGTTCGGCACCTGGACGCGGGGGGACATCAagttctcctccgccgg ccgTGGCCTGAAATCCTTCGGCTTCGCGCTCGTGGGCATCGGGCTGGTCA CGCTCATGTTCTTGCTCGAGGACGAGCTGGTCAACCCGGCGTTCGACGAC TACCGGCAGTGGGACGGGAACGACTTCTTCCACTTCGGGGAGGACCTAGG GGCCTGGGTAACCGCCATTCCCGCCCGGACCTCGGACTACCTCTCCCATT TCAATTGGGTAGAGTGGAGCGCCCGCGTGGCCGCGCGTGCAGGCGCGGCG CCCCGGTGGCAGAACCAGCTCTTGGGCCTCCCCGCGATCCCCCCCCAGTG ATCACTTGAACCAGTGCCCCCCACTCCCGCATGTATCCTGAGACCGCCAT CCAgagccccccctccctagccccttcctcccccggcgcaTTGCAGCCGG CGGCGTTTCACATCCTGGCAGCATGTGGATTTAAAGAAGGACATCAAATT GAAGAGACAGGAAGAATCAACGGCCGACAGCATGCGtgtccttcgcttcc tttgTGGCGGTTATTTTATTTTGCATCGATCACTTGCATGGCCATCTGCA CTCATGGACTCAATTCCAgccctc
back to top

Coding sequence (CDS) from alignment at CM002465.1:410562..412035+

>rna5202 ID=rna5202|Name=rna5202|organism=Nannochloropsis gaditana|type=CDS|length=951bp|location=Sequence derived from alignment at CM002465.1:410562..412035+ (Nannochloropsis gaditana)
ATGCAACAAAAGAATAAAGGGCACACAAGATGCGGGAGGTGGTCATTGCT
TTCGGTGGCAGGCCTAGTAGGGTTCACCGTAGCCCTAGGAATGCACCACA
CGCACGCGTTCGTCGCGCCTATTGCACCCCATGGCCTTCCAGAGAATCTG
AGAGTGGTTCGGCACCGACACCAGCTTGGATCGCAGACATGTCAATTGGT
GCAGACGCCCCGATTCTGGTCCCCTTTCACAGGACAGCTGAGGGGCAAGA
GTGGTAGCAGTCGGTTGCACGCGCGCATTTCGGAGAAGCCAGGGGATAAG
CAAGatagagaggaaggcggggagcaaGGCTTGCCGAAGGTTCTAGAAGA
AGGTTTACCTAAGCTGACACGACAGcaagaagaggcggtggacctGTCAA
TGGGCGTGATACCTCCCGAGCAGGAGCCGCTTTCTGGCGAGGCCTGGAcg
gccgaggtggagaaacGGCTGCAGGAGATGTATGAGAAGGGCACGTACGA
CCCCACGCCCGTGAATCTGACGCCCAAAGAGCTGGCGAACCAGCAGTGGG
TGGACGACTTCCTGAACAAGGAAGAGCGACCCATCCGGTTCACGCCCGAG
TACTGGTTCGGCACCTGGACGCGGGGGGACATCAagttctcctccgccgg
ccgTGGCCTGAAATCCTTCGGCTTCGCGCTCGTGGGCATCGGGCTGGTCA
CGCTCATGTTCTTGCTCGAGGACGAGCTGGTCAACCCGGCGTTCGACGAC
TACCGGCAGTGGGACGGGAACGACTTCTTCCACTTCGGGGAGGACCTAGG
GGCCTGGGTAACCGCCATTCCCGCCCGGACCTCGGACTACCTCTCCCATT
TCAATTGGGTAGAGTGGAGCGCCCGCGTGGCCGCGCGTGCAGGCGCGGCG
CCCCGGTGGCAGAACCAGCTCTTGGGCCTCCCCGCGATCCCCCCCCAGTG
A
back to top
Synonyms
Publications