rna520, rna520 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna520
Unique Name	rna520
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1241
Alignment location	CM002455.1:1308017..1309554 +

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100115g7.6574.mrna
Orig protein id	gnl\|cribi\|Naga_100115g7.6574
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1308017..1309554 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100115g7	gene502	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna520	rna520-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30149.1	cds520	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1308017..1309554+
coding sequence from alignment at CM002455.1:1308017..1309554+

mRNA sequence

>rna520 ID=rna520|Name=rna520|organism=Nannochloropsis gaditana|type=mRNA|length=1241bp
AGTTGCGCGTTGGTTGCCACCGGGACCAAAACAGCAGTGGGAATGGGTGG
CAGAGAGCTCGTGTCGGTGATTAGCCATTGGGTCAATAAAACACTGTCGT
AGGCAAGGTTGGCCATTGGTTGTCGCTCACGTGTGGTTGGCTACTTGCTG
TCTCGGGCCAGCGTGGTCACTGCCCAAGGCTACGTCTTGTAAGCCCTCTA
GGCAATTTCATGCCATAAGAACTGTATTACATATCTTCTCATGGCTTGCA
CCCCACCTCCTCAAAACTAATCGAGCCAGTGGCATCTAATCACCAGTCTT
TTTCACATTGTCATCCATATTTCAAACAAAATAGTCATGAAGGCCTTTTC
GTTTTTGATGGTTTTCTTGAGCGTGGCGCTGGCACAAGCGTTTTTGGCAC
CAGCAACTTTTCAAGTGCCCCGTGCGATGGATGCACTTTCCCCATCTCCC
GTGGCTCCTGCCCGTAAATCACTCATGGTGATGCGGGAACGAAAGTGCGA
GCTTTTGGGCAAGCGCGCGAACCGACAGTGCCGTTCTGTGTCCTTCTCCC
ACATCCGCAACAAGAAAACCCAAGGCGTCAACTTGCACGAAAAGCGGGTA
TGGTGGGCGGAAGGTAGCAAGTTTGTCCGTCTCCGTCTGTCGACCAAGGG
GTGGAGGACCGTCAAGAAGTACGGATTGAACAAGGCCTTTGCCAAGTTTG
AGGTGGATCTGCACCAATTCCAGGCACAGCATTGAGCTGAGCGCCAGGAA
AGAAGCCGTGATGCTTTTCAAGGGCATTCGTGACGGGGGAGATGCGAAGA
AGGGAGAGGGTGCAGAGATGGGTGGACGGTGGGAGAAGAAGAGGGAGCGT
GGACAGGTACCACATACGACATTACCCGTATTGTTTAGATTGGCCTTCAG
CTTTTCTTGAAAGCCGTCCACCAACCACATTTTTTCAGTCTTCCAATCCT
CTTCTGCCTTTGCGCATGTTGTTTCACGCCCATTGGACGCGTTGACGGCC
TTGTTGATGCGTGCGTGACGATAGGGAGGAAGACGTTGGGCCTTGGGACC
GTACCCCGCACAACTTCTCGTTTCCTCGACACATGTGCGCGGGCACTCAC
GAGAGAAGGTAGGAAAGCTTTCTGGGCATGAAAGAATTAATTCAGATCGA
TAAATCGATTTGCTCGTTGCGTTTATGGCGCGGCATGGTGCTTTTAAGGC
ATCGCGATGAGGGTTACGCGCTGTAGCAGATTTTTCTTTCC

protein sequence of rna520

>rna520-protein ID=rna520-protein|Name=rna520|organism=Nannochloropsis gaditana|type=polypeptide|length=428bp
MIIFFFAITCRTFRLKHRPKRKGPSCPNTARQHSAQYILLSPRGIPPPAI
LMSYMLCAFFLFHLPTESSTTRIKNEKTLSMQLHRTLIGLAALVPFLALT
SAEVEQFEIFPGQATWDSSIELPGMSSKAATRGRTDGEPTTAEGHCCGMK
GLGGATIEVMCHPETVAMGKPFTVNVKYTSDIKRPVDVHVDVLNAHTKAF
YAGKWEEFDTQAGEVSLTIQMPSWGVEEPFLWKVFLTPRGEPFPNMLAET
GFVAHLADYVKNDCAPFKSYGFDPPELANNVKTVDFVALQKVPAVLTPGS
QAMVDVEYNLVGAAKAILSVALMRKGPNTIISSFADLAAPGQNKVSLPLP
VPYDAPKEAVYIVVTLTPDGASWEDRLAEDQLLGANQGESVQAKVRCENC
WVRRRLNSGAGGEDGRTRVALHVFYCFH

mRNA from alignment at CM002455.1:1308017..1309554+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna520 ID=rna520|Name=rna520|organism=Nannochloropsis gaditana|type=mRNA|length=1538bp|location=Sequence derived from alignment at CM002455.1:1308017..1309554+ (Nannochloropsis gaditana)
ATGATTATATTCTTTTTTGCTATCACGTGCCGGACTTTCCGTTTGAAGCA
CAGGCCTAAACGCAAGGGACCAAGCTGTCCGAACACCGCTAGGCAGCACT
CGGCGCAATATATACTGCTTTCACCCCGGggcatccctcctcctgccatc
CTTATGTCTTATATGCTTTgtgcctttttcctcttccatctaCCTACAGA
AAGCTCAACAACTAGGATTAAAAACGAGAAAACCTTAAGCATGCAGCTCC
ACCGTACTCTTATTGGCCTTGCCGCCCTTGTGCCTTTTCTTGCTCTAACC
AGCGCTGAGGTCGAGCAATTTGAGATCTTTCCTGGACAAGCCACATGGGA
CAGCTCCATTGAACTTCCTGGTATGTCCTCGAAAGCTGCCACTCGCGGAC
GGACGGACGGTGAGCCCACAACTGCTGAAGGCCACTGTTGCGGGATGAAA
GGCTTGGGCGGTGCTACCATTGAAGTCATGTGCCACCCCGAAACGGTGGC
CATGGGGAAGCCTTTCACGGTCAATGTGAAGTACACCAGCGACATCAAAC
GCCCTGTGGATGTGCACGTCGACGTTCTGAACGCGCACACCAAGGCTTTT
TACGCTGGGAAATGGGAGGAATTTGACACGCAGGCCGGCGAAGTCTCCCT
GACGATTCAAATGCCGTCGTGGGGGGTGGAAGAACCCTTCCTCTGGAAGG
TGTTCCTGACGCCCCGTGGCGAGCCCTTCCCCAACATGTTGGCGGAGACC
GGCTTTGTGGCCCGTAAGTGTTCGTGTGGTatcatgggggaggaggaacc
tCTTGGAAGGAAATGTGCCTGGTCTCGTCTCCTTTCCGCACGGGCGAGAC
CGGAGTAGGAGTTATGTTTAagtcctttctttcctgaaTTGATGGCTTTC
CAGGACTGTCTCCATGTAACACTGTGTTCAttgttcttcctcttctcccc
ccttccgccccccagACTTGGCGGACTACGTGAAGAACGATTGCGCGCCT
TTCAAGTCCTACGGCTTTGACCCCCCTGAGCTGGCCAACAACGTCAAGAC
GGTCGATTTCGTCGCCCTGCAGAAGGTGCCCGCCGTCCTCACGCCCGGGT
CCCAGGCCATGGTGGACGTGGAATACAACTTGGTGggcgccgccaaggcc
atccTCTCTGTCGCCTTGATGCGCAAGGGCCCCAACACCATCATTTCCTC
TTTTGCCGACCTGGCCGCACCTGGACAGAACAAGGTCagcctgccccttc
ccgtcccctaTGATGCGCCCAAGGAGGCTGTGTACATAGTGGTCACATTG
ACGCCCGACGGCGCGAGCTGGGAGGATCGGTTGGCCGAGGACCGTACTTA
CCGCACCAAGATGGCGGGCACTCGCATGCGTCGCGAGTAAAGAGCTCCTT
GGTGCGAACCAGGGCGAGAGCGTGCAGGCGAAGGTGAGGTGTGAGAATTG
CTGGGTCCGTAGGAGATTGAAtagtggagcaggaggggaggatggtcGAA
CGAGGGTTGCCTTGCATGTATTTTACTGTTTTCATTGA

Coding sequence (CDS) from alignment at CM002455.1:1308017..1309554+

>rna520 ID=rna520|Name=rna520|organism=Nannochloropsis gaditana|type=CDS|length=3861bp|location=Sequence derived from alignment at CM002455.1:1308017..1309554+ (Nannochloropsis gaditana)
ATGATTATATTCTTTTTTGCTATCACGTGCCGGACTTTCCGTTTGAAGCA
CAGGCCTAAACGCAAGGGACCAAGCTGTCCGAACACCGCTAGGCAGCACT
CGGCGCAATATATACTGCTTTCACCCCGGggcatccctcctcctgccatc
CTTATGTCTTATATGCTTTgtgcctttttcctcttccatctaCCTACAGA
AAGCTCAACAACTAGGATTAAAAACGAGAAAACCTTAAGCATGCAGCTCC
ACCGTACTCTTATTGGCCTTGCCGCCCTTGTGCCTTTTCTTGCTCTAACC
AGCGCTGAGGTCGAGCAATTTGAGATCTTTCCTGGACAAGCCACATGGGA
CAGCTCCATTGAACTTCCTGGTATGTCCTCGAAAGCTGCCACTCGCGGAC
GGACGGACGGTGAGCCCACAACTGCTGAAGGCCACTGTTGCGGGATGAAA
GGCTTGGGCGGTGCTACCATTGAAGTCATGTGCCACCCCGAAACGGTGGC
CATGGGGAAGCCTTTCACGGTCAATGTGAAGTACACCAGCGACATCAAAC
GCCCTGTGGATGTGCACGTCGACGTTCTGAACGCGCACACCAAGGCTTTT
TACGCTGGGAAATGGGAGGAATTTGACACGCAGGCCGGCGAAGTCTCCCT
GACGATTCAAATGCCGTCGTGGGGGGTGGAAGAACCCTTCCTCTGGAAGG
TGTTCCTGACGCCCCGTGGCGAGCCCTTCCCCAACATGTTGGCGGAGACC
GGCTTTGTGGCCCACTTGGCGGACTACGTGAAGAACGATTGCGCGCCTTT
CAAGTCCTACGGCTTTGACCCCCCTGAGCTGGCCAACAACGTCAAGACGG
TCGATTTCGTCGCCCTGCAGAAGGTGCCCGCCGTCCTCACGCCCGGGTCC
CAGGCCATGGTGGACGTGGAATACAACTTGGTGggcgccgccaaggccat
ccTCTCTGTCGCCTTGATGCGCAAGGGCCCCAACACCATCATTTCCTCTT
TTGCCGACCTGGCCGCACCTGGACAGAACAAGGTCagcctgccccttccc
gtcccctaTGATGCGCCCAAGGAGGCTGTGTACATAGTGGTCACATTGAC
GCCCGACGGCGCGAGCTGGGAGGATCGGTTGGCCGAGGACCAGCTCCTTG
GTGCGAACCAGGGCGAGAGCGTGCAGGCGAAGGTGAGGTGTGAGAATTGC
TGGGTCCGTAGGAGATTGAAtagtggagcaggaggggaggatggtcGAAC
GAGGGTTGCCTTGCATGTATTTTACTGTTTTCATTGAATGATTATATTCT
TTTTTGCTATCACGTGCCGGACTTTCCGTTTGAAGCACAGGCCTAAACGC
AAGGGACCAAGCTGTCCGAACACCGCTAGGCAGCACTCGGCGCAATATAT
ACTGCTTTCACCCCGGggcatccctcctcctgccatcCTTATGTCTTATA
TGCTTTgtgcctttttcctcttccatctaCCTACAGAAAGCTCAACAACT
AGGATTAAAAACGAGAAAACCTTAAGCATGCAGCTCCACCGTACTCTTAT
TGGCCTTGCCGCCCTTGTGCCTTTTCTTGCTCTAACCAGCGCTGAGGTCG
AGCAATTTGAGATCTTTCCTGGACAAGCCACATGGGACAGCTCCATTGAA
CTTCCTGGTATGTCCTCGAAAGCTGCCACTCGCGGACGGACGGACGGTGA
GCCCACAACTGCTGAAGGCCACTGTTGCGGGATGAAAGGCTTGGGCGGTG
CTACCATTGAAGTCATGTGCCACCCCGAAACGGTGGCCATGGGGAAGCCT
TTCACGGTCAATGTGAAGTACACCAGCGACATCAAACGCCCTGTGGATGT
GCACGTCGACGTTCTGAACGCGCACACCAAGGCTTTTTACGCTGGGAAAT
GGGAGGAATTTGACACGCAGGCCGGCGAAGTCTCCCTGACGATTCAAATG
CCGTCGTGGGGGGTGGAAGAACCCTTCCTCTGGAAGGTGTTCCTGACGCC
CCGTGGCGAGCCCTTCCCCAACATGTTGGCGGAGACCGGCTTTGTGGCCC
ACTTGGCGGACTACGTGAAGAACGATTGCGCGCCTTTCAAGTCCTACGGC
TTTGACCCCCCTGAGCTGGCCAACAACGTCAAGACGGTCGATTTCGTCGC
CCTGCAGAAGGTGCCCGCCGTCCTCACGCCCGGGTCCCAGGCCATGGTGG
ACGTGGAATACAACTTGGTGggcgccgccaaggccatccTCTCTGTCGCC
TTGATGCGCAAGGGCCCCAACACCATCATTTCCTCTTTTGCCGACCTGGC
CGCACCTGGACAGAACAAGGTCagcctgccccttcccgtcccctaTGATG
CGCCCAAGGAGGCTGTGTACATAGTGGTCACATTGACGCCCGACGGCGCG
AGCTGGGAGGATCGGTTGGCCGAGGACCAGCTCCTTGGTGCGAACCAGGG
CGAGAGCGTGCAGGCGAAGGTGAGGTGTGAGAATTGCTGGGTCCGTAGGA
GATTGAAtagtggagcaggaggggaggatggtcGAACGAGGGTTGCCTTG
CATGTATTTTACTGTTTTCATTGAATGATTATATTCTTTTTTGCTATCAC
GTGCCGGACTTTCCGTTTGAAGCACAGGCCTAAACGCAAGGGACCAAGCT
GTCCGAACACCGCTAGGCAGCACTCGGCGCAATATATACTGCTTTCACCC
CGGggcatccctcctcctgccatcCTTATGTCTTATATGCTTTgtgcctt
tttcctcttccatctaCCTACAGAAAGCTCAACAACTAGGATTAAAAACG
AGAAAACCTTAAGCATGCAGCTCCACCGTACTCTTATTGGCCTTGCCGCC
CTTGTGCCTTTTCTTGCTCTAACCAGCGCTGAGGTCGAGCAATTTGAGAT
CTTTCCTGGACAAGCCACATGGGACAGCTCCATTGAACTTCCTGGTATGT
CCTCGAAAGCTGCCACTCGCGGACGGACGGACGGTGAGCCCACAACTGCT
GAAGGCCACTGTTGCGGGATGAAAGGCTTGGGCGGTGCTACCATTGAAGT
CATGTGCCACCCCGAAACGGTGGCCATGGGGAAGCCTTTCACGGTCAATG
TGAAGTACACCAGCGACATCAAACGCCCTGTGGATGTGCACGTCGACGTT
CTGAACGCGCACACCAAGGCTTTTTACGCTGGGAAATGGGAGGAATTTGA
CACGCAGGCCGGCGAAGTCTCCCTGACGATTCAAATGCCGTCGTGGGGGG
TGGAAGAACCCTTCCTCTGGAAGGTGTTCCTGACGCCCCGTGGCGAGCCC
TTCCCCAACATGTTGGCGGAGACCGGCTTTGTGGCCCACTTGGCGGACTA
CGTGAAGAACGATTGCGCGCCTTTCAAGTCCTACGGCTTTGACCCCCCTG
AGCTGGCCAACAACGTCAAGACGGTCGATTTCGTCGCCCTGCAGAAGGTG
CCCGCCGTCCTCACGCCCGGGTCCCAGGCCATGGTGGACGTGGAATACAA
CTTGGTGggcgccgccaaggccatccTCTCTGTCGCCTTGATGCGCAAGG
GCCCCAACACCATCATTTCCTCTTTTGCCGACCTGGCCGCACCTGGACAG
AACAAGGTCagcctgccccttcccgtcccctaTGATGCGCCCAAGGAGGC
TGTGTACATAGTGGTCACATTGACGCCCGACGGCGCGAGCTGGGAGGATC
GGTTGGCCGAGGACCAGCTCCTTGGTGCGAACCAGGGCGAGAGCGTGCAG
GCGAAGGTGAGGTGTGAGAATTGCTGGGTCCGTAGGAGATTGAAtagtgg
agcaggaggggaggatggtcGAACGAGGGTTGCCTTGCATGTATTTTACT
GTTTTCATTGA

Synonyms

Publications