rna52, rna52 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna52
Unique Name	rna52
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2091
Alignment location	CM002455.1:158384..159870 +

Link to JBrowse

Properties


Property Name	Value
Product	pyridoxamine 5 -phosphate oxidase- fmn-binding protein
Orig transcript id	gnl\|cribi\|Naga_100634g3.4696.mrna
Orig protein id	gnl\|cribi\|Naga_100634g3.4696
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:158384..159870 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100634g3	gene51	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna52	rna52-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30619.1	cds52	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:158384..159870+
coding sequence from alignment at CM002455.1:158384..159870+

mRNA sequence

>rna52 ID=rna52|Name=rna52|organism=Nannochloropsis gaditana|type=mRNA|length=2091bp
GCATGGATCTGTGAGTGTACCTGGTCCTGACATAGCCTCCATGATCATCA
ATGGTCTCCCTCCCTCGGTACTTCCCCACCCCAATCATCTCACGGCCACG
CCCCCCTCCCTTCTCTTTCCCGCTACCATGCCAGGGTCGCGCCTCCCTCC
TCTTCCTCCCCTTCCAGCGCCCACGAGTCCGGCGATTCCCTCCCTACCCT
CCACCCCCTCCTCCATCGGAACGATATCCGGGGGGCGGGGGTGGAGAGCG
GGCGTGGATGGCCGAGTCAGCTGACGTCCAACGGCTCCTCGTCGCGCCGG
CTTCGGCAGGATTCTCTGGGGAGATCGGCTTCCCTTTCTTCGTTCCGCAG
GGGCCCGGGCCTGGAAGGGAGGGAAGGGAAGGACGGTGGCTTGAAGGGAC
GGATGCGGGTGCTTTCCGACCATGATATCATGTTTCTCCGTTCCAAGCTC
GCCACTCAAGCGAATTCCGACATGGTTATGGCCAAAGACTTCGAGGCCTT
CTGGCAGTGGTGGTCGCTGGTGTTCAGCGCATTGGAAATCATTTACCGAG
AGTGGTTGTGCGAGGCGCCCACGCCCGTGGTGATTGGATTTTCTGGACGG
AAAGAATCAGAGGCGGCCTTAAAGGAGAAACCCAGCGGCACCTTCCTCCT
TCGCTTTTCTACAAGTCACCTGGGCTTGCTCGCCATCTCCTTCGTTGCCC
CCCCACCTTCTCCTTCTGCCTCGGTCCCACCGCCCTCCCCTGGTTCCGCC
CCTGTCGGCCCTCCAATACAACATTGCCTGGTGCGAGTGACGGAGAAAGG
CTGCGAGTTATTCATGGAACCGGGGAGAAAGCGATACGACGACTTGCAGG
CGTTGCTCGAGGACATTGCCACCCTGACACTCTTTTATCCAGATGTACCC
AAGCAGGATGTCTTACAGGCTCTTCGAAAGCCATTACCGATTGAAGTGGA
GGCAATGCGGCAATCCAATCCCGCGTCCGCTGACGAGACAACGGTTGCGT
GACCTTAAGAATTTGTATGAATGATAGGCTGGCAAGCGTGGGCATTGAAG
GCGTCTATCGTGCATGAATTTAAAGCCTGGGCATCGAAGGGAGGGGGAGG
TAAGGGCTTGAATGCGACCTGATGAAGTGACCAGGAAGGGTTGAAAAGCT
TGCGGGACAAATTTACTCCTTTGATTGAAGTAACCTCACTTAGCTCTTGT
GAAGCTCATCCCTGCTGTTAAGTTTTGGAATTGATTGGAATGTCGACGTT
ATCAAGTCTTTAAGTTGTAGCGGTTGGTTAGCCGTTGGACGGGTAACGGC
TGTTCGGTGTTGTACCCTCACATGGGGAAAAGAGGATGCCCTTCGACGCA
AATCGGAGCGCGAGTGGAGTCCCCCGGCACCATAACTACATATTCATTTT
CAGATCATCATCTCAACGAAATTTTGCATTGCAAGTAATATACCGCGGGT
GTGTTGCTCAAAAACACAATGTCATCGTAAATCACAGTTGTTCTTCGCTG
TAGTTCCTCCAATAAGCTTAAGCAAAACATGTGCTTCTTCGTAAAAATCT
GTTGAATATTGAAGATACTGGCGAAAATGTAGATAGTGAGCACGTCAGCA
AAGCTGCGGGTCGCAGATTTGACCCACTTAAGTCTAGGCAAATCCGTGGG
CCAAAACTATGATAAGGACGATGGCGAGGGCAAGGAGGATGAAAAGCAAT
AAATACGGGACAAGAAACGCAATCCCTAAGGGTTCGTCCCTATACAGATA
CGTTAAGGGAGAACTACTGCCGATCTGCTCCCGATCCTGGGCATGACGCT
GCCCATTTTCTAATGCATCTGCTCCGTTTTGATCCTGATTATCCCCTCGG
GTAGTCATAAGGGGGAGGACCTGAGAACGTGTGGGACGGCAGGCACATCT
CTCGTGAGTTTTTCTTAGATCAGCAATTTCTTTCTTGTGCGCTCGACGCA
AGCTTTGCGTAGTTTGCCTTTCCCGAAATAGAGCGGCCTACCCAGAAATA
AGAAGCGGAGAACAAAGGAGAAAAGATAAGCATGCGAGTATGGCTGCGAT
GATTCCCCATCCCTTGCAAAATACCTCCAAGTCTTGTATCT

protein sequence of rna52

>rna52-protein ID=rna52-protein|Name=rna52|organism=Nannochloropsis gaditana|type=polypeptide|length=309bp
MPVHFLRNPLLCSVSHTATTLLCALPVLRATFVAPVRNIAFLHSPFNRFP
SSLTPMATMKAAEIGEGGLADIGQARSSSPTASNADDASHGARGEKKPKW
VLDLGISMARNNRDAHSRYIQLATVGFGSDDSSVIKPFVRTVVFRGFYNG
MDPQDKHLLKIITDARSEKIPQLTLHPDAEIAWYFVKTREQYRLRGRVEI
VTPTSKDRHLQAARKQQWNNLSESARAQFLWPYPKHPSPLDQDPSVFSPD
IPPTLASAPPETFCLLLVRVSEVDHLDLKASPQRRTVHARRKGQKEGEEG
DWEVTKVNP

mRNA from alignment at CM002455.1:158384..159870+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna52 ID=rna52|Name=rna52|organism=Nannochloropsis gaditana|type=mRNA|length=1487bp|location=Sequence derived from alignment at CM002455.1:158384..159870+ (Nannochloropsis gaditana)
AATCTGGGAGACAATATCTCTCTTGGAATTCTACAACAGCTTGCGAGTGC
TATGTGCTTTTTTTGTGGGTTGCCGTCTCGCGAGTATCTTTGTCTGGAAG
GGGGATATCGAGAGGTCAGACTGTTTCTTACTTGGCACTGTTATTGACTG
AAAACCATTTGCGTACTTTTCCGACCCCGAAACATATTATTACATACATA
TCATCTTCGATTCCATGCAGGATTCCCTGCATGCCTGTCCATTTTCTCCG
CAATCCTTTACTGTGCTCCGTCTCACACACCGCCACCACGCTGCTTTGCG
CCTTACCCGTCCTTCGGGCAACTTTCGTCGCCCCTGTCCGCAACATAGCA
TTTCTTCATTCTCCTTTCAACCGATTTCCCTCAAGTTTGACGCCTATGGC
CACCATGAAAGCAGCTGAAATCGGAGAAGGCGGCCTTGCCGATATAGGAC
AGGCCCGCTCATCGTCGCCCACTGCCTCAAATGCTGACGACGCATCTCAC
GGAGCTAGGGGTGAAAAGAAGCCAAAATGGGTCCTGGACCTCGGCATTTC
TATGGCCCGGAACAATCGAGACGCACACAGCCGCTACATTCAGCTTGCTA
CGGTAGGATTTGGGTCGGACGACTCCTCCGTCATCAAACCTTTCGTCCGT
ACTGTTGTCTTTCGAGGCTTTTACAATGGTATGGACCCGCAGGACAAGGT
AAGCAGAGTTAATGAATTCTTCCTCATATTATCTCGTTGCTTCTCTGTGG
TAAATTTCCTGTATGCGCGTGCAATCTATGGTTGGGCAGACAagcccccc
atcccctactgattttccatttccatcttTGCTCACGCTGGTAACTGCCA
AAGCACCTGCTTAAAATCATAACAGATGCCCGCAGCGAGAAGATTCCGCA
GTTGACCCTTCATCCCGACGCGGAGATTGCCTGGTATTTCGTCAAGACTC
GGGAGCAGTATCGGCTGCGAGGCCGCGTGGAAATTGTGACGCCCACGAGC
AAAGACCGCCATTTACAGGCAGCACGGAAACAGCAATGGAACAATTTATC
TGAGAGCGCCCGTGCGCAATTTCTGTGGCCGTACCCCAAGCATCCATCGC
CTCTCGATCAGGATCCGAGTGTTTTTTCTCCAGACATTCCACCGACACTC
GCAAGTGCCCCCCCGGAGACCTTCTGTTTGCTGTTGGTCCGAGTCTCGGA
GGTGGACCATTTGGACTTAAAGGCATCCCCGCAACGGCGTACGGTGCACG
CGCGGAGAAAGGGtcaaaaagagggggaggaaggggactgGGAAGTGACG
AAGGTGAATCCTTAACACGAATCCGGAGGGAACGCTCCCAAAGAAAGCCC
CATTACCTCTCGGTAGAGGACTATGGTCTTTTCGCCTGTGCTCCTTAGAT
ACTTGTTTCTTCTCTGGATATATATTGTTGCTCTTCTCCACGGGTGGTCT
GGACAGAGGGAGATGCCGAACGCCTCGCGTGATTctt

Coding sequence (CDS) from alignment at CM002455.1:158384..159870+

>rna52 ID=rna52|Name=rna52|organism=Nannochloropsis gaditana|type=CDS|length=1860bp|location=Sequence derived from alignment at CM002455.1:158384..159870+ (Nannochloropsis gaditana)
ATGCCTGTCCATTTTCTCCGCAATCCTTTACTGTGCTCCGTCTCACACAC
CGCCACCACGCTGCTTTGCGCCTTACCCGTCCTTCGGGCAACTTTCGTCG
CCCCTGTCCGCAACATAGCATTTCTTCATTCTCCTTTCAACCGATTTCCC
TCAAGTTTGACGCCTATGGCCACCATGAAAGCAGCTGAAATCGGAGAAGG
CGGCCTTGCCGATATAGGACAGGCCCGCTCATCGTCGCCCACTGCCTCAA
ATGCTGACGACGCATCTCACGGAGCTAGGGGTGAAAAGAAGCCAAAATGG
GTCCTGGACCTCGGCATTTCTATGGCCCGGAACAATCGAGACGCACACAG
CCGCTACATTCAGCTTGCTACGGTAGGATTTGGGTCGGACGACTCCTCCG
TCATCAAACCTTTCGTCCGTACTGTTGTCTTTCGAGGCTTTTACAATGGT
ATGGACCCGCAGGACAAGCACCTGCTTAAAATCATAACAGATGCCCGCAG
CGAGAAGATTCCGCAGTTGACCCTTCATCCCGACGCGGAGATTGCCTGGT
ATTTCGTCAAGACTCGGGAGCAGTATCGGCTGCGAGGCCGCGTGGAAATT
GTGACGCCCACGAGCAAAGACCGCCATTTACAGGCAGCACGGAAACAGCA
ATGGAACAATTTATCTGAGAGCGCCCGTGCGCAATTTCTGTGGCCGTACC
CCAAGCATCCATCGCCTCTCGATCAGGATCCGAGTGTTTTTTCTCCAGAC
ATTCCACCGACACTCGCAAGTGCCCCCCCGGAGACCTTCTGTTTGCTGTT
GGTCCGAGTCTCGGAGGTGGACCATTTGGACTTAAAGGCATCCCCGCAAC
GGCGTACGGTGCACGCGCGGAGAAAGGGtcaaaaagagggggaggaaggg
gactgGGAAGTGACGAAGGTGAATCCTTAAATGCCTGTCCATTTTCTCCG
CAATCCTTTACTGTGCTCCGTCTCACACACCGCCACCACGCTGCTTTGCG
CCTTACCCGTCCTTCGGGCAACTTTCGTCGCCCCTGTCCGCAACATAGCA
TTTCTTCATTCTCCTTTCAACCGATTTCCCTCAAGTTTGACGCCTATGGC
CACCATGAAAGCAGCTGAAATCGGAGAAGGCGGCCTTGCCGATATAGGAC
AGGCCCGCTCATCGTCGCCCACTGCCTCAAATGCTGACGACGCATCTCAC
GGAGCTAGGGGTGAAAAGAAGCCAAAATGGGTCCTGGACCTCGGCATTTC
TATGGCCCGGAACAATCGAGACGCACACAGCCGCTACATTCAGCTTGCTA
CGGTAGGATTTGGGTCGGACGACTCCTCCGTCATCAAACCTTTCGTCCGT
ACTGTTGTCTTTCGAGGCTTTTACAATGGTATGGACCCGCAGGACAAGCA
CCTGCTTAAAATCATAACAGATGCCCGCAGCGAGAAGATTCCGCAGTTGA
CCCTTCATCCCGACGCGGAGATTGCCTGGTATTTCGTCAAGACTCGGGAG
CAGTATCGGCTGCGAGGCCGCGTGGAAATTGTGACGCCCACGAGCAAAGA
CCGCCATTTACAGGCAGCACGGAAACAGCAATGGAACAATTTATCTGAGA
GCGCCCGTGCGCAATTTCTGTGGCCGTACCCCAAGCATCCATCGCCTCTC
GATCAGGATCCGAGTGTTTTTTCTCCAGACATTCCACCGACACTCGCAAG
TGCCCCCCCGGAGACCTTCTGTTTGCTGTTGGTCCGAGTCTCGGAGGTGG
ACCATTTGGACTTAAAGGCATCCCCGCAACGGCGTACGGTGCACGCGCGG
AGAAAGGGtcaaaaagagggggaggaaggggactgGGAAGTGACGAAGGT
GAATCCTTAA

Synonyms

Publications