EWM30619.1, cds52 (CDS) Nannochloropsis gaditana

Overview
NameEWM30619.1
Unique Namecds52
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:158614..159081 +
Alignment locationCM002455.1:159237..159698 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30619.1
Productpyridoxamine 5 -phosphate oxidase- fmn-binding protein
Orig transcript idgnl|cribi|Naga_100634g3.4696.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:158614..159081 +
CM002455.1supercontigCM002455.1:159237..159698 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0010181FMN binding
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR024624Pyridox_Oxase_Alr4036_FMN-bd
IPR024015Pyridox_Oxase_FMN-dep_Alr4036
IPR012349Split_barrel_FMN-bd
Homology
BLAST of EWM30619.1 vs. NCBI_GenBank
Match: gi|585113295|gb|EWM30619.1| (pyridoxamine 5 -phosphate oxidase- fmn-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 639.802 bits (1649), Expect = 0.000e+0
Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0
Query:    1 MPVHFLRNPLLCSVSHTATTLLCALPVLRATFVAPVRNIAFLHSPFNRFPSSLTPMATMKAAEIGEGGLADIGQARSSSPTASNADDASHGARGEKKPKWVLDLGISMARNNRDAHSRYIQLATVGFGSDDSSVIKPFVRTVVFRGFYNGMDPQDKHLLKIITDARSEKIPQLTLHPDAEIAWYFVKTREQYRLRGRVEIVTPTSKDRHLQAARKQQWNNLSESARAQFLWPYPKHPSPLDQDPSVFSPDIPPTLASAPPETFCLLLVRVSEVDHLDLKASPQRRTVHARRKGQKEGEEGDWEVTKVNP 309
            MPVHFLRNPLLCSVSHTATTLLCALPVLRATFVAPVRNIAFLHSPFNRFPSSLTPMATMKAAEIGEGGLADIGQARSSSPTASNADDASHGARGEKKPKWVLDLGISMARNNRDAHSRYIQLATVGFGSDDSSVIKPFVRTVVFRGFYNGMDPQDKHLLKIITDARSEKIPQLTLHPDAEIAWYFVKTREQYRLRGRVEIVTPTSKDRHLQAARKQQWNNLSESARAQFLWPYPKHPSPLDQDPSVFSPDIPPTLASAPPETFCLLLVRVSEVDHLDLKASPQRRTVHARRKGQKEGEEGDWEVTKVNP
Sbjct:    1 MPVHFLRNPLLCSVSHTATTLLCALPVLRATFVAPVRNIAFLHSPFNRFPSSLTPMATMKAAEIGEGGLADIGQARSSSPTASNADDASHGARGEKKPKWVLDLGISMARNNRDAHSRYIQLATVGFGSDDSSVIKPFVRTVVFRGFYNGMDPQDKHLLKIITDARSEKIPQLTLHPDAEIAWYFVKTREQYRLRGRVEIVTPTSKDRHLQAARKQQWNNLSESARAQFLWPYPKHPSPLDQDPSVFSPDIPPTLASAPPETFCLLLVRVSEVDHLDLKASPQRRTVHARRKGQKEGEEGDWEVTKVNP 309          
BLAST of EWM30619.1 vs. NCBI_GenBank
Match: gi|585102819|gb|EWM22322.1| (pyridoxamine 5 -phosphate oxidase- fmn-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 157.532 bits (397), Expect = 2.784e-42
Identity = 120/346 (34.68%), Postives = 166/346 (47.98%), Query Frame = 0
Query:    1 MPVHFL--RNPLLCSVSHTATTLLCALPVLRATFVAPVRNIAFLHSPFNRFPS-SLTPMATMKAAEIGEGGLADIGQARSSSPTASNADDASHGARGEKKPKWVLDLGISMARNNRDAHSRYIQLATVG---FGSDDSS----------VIKPFVRTVVFRGFYNGMDPQDKHLLKIITDARSEKIPQLTLHPDAEIAWYFVKTREQYRLRGRVEIVTPTSKDRHLQAARKQQWNNLSESARAQFLWPYPKHPSPLDQDPSVFSPDIPPTLAS--------APPETFCLLLVRVSEVDHLDLKASPQRRTVHA-------------RRKGQKEGEEGDWEVTKVNP 309
            MP+H +  R+P+  S        LC   +L AT ++      F   PF  + S SL  MA          GL DIG   +   + ++  D         +P WV  L  ++  N  D HSR++QLAT+    F   +++          +++P VR VVFRGF N    ++    K+ITD+RSEKI ++  +P  EI+WYF++TREQ+RL GR ++VT    D  L  AR  QW  LS++AR QF WP P     L+QD    S D    L +         PPETF LLL     VDHL L+ +PQ RTVH                +G+   E   W   +VNP
Sbjct:    1 MPIHLIYSRHPVRGSG-------LCKFFLLVATLISGT-TAGF---PFCCWSSKSLILMAAATPTAGSNEGLRDIGG--TCVVSKNDQSDPRETVASASQPPWVHALNNALEANKADMHSRFVQLATIAHFSFAKQETTDVSENISPQGLLRPRVRWVVFRGFLN----ENTTTFKVITDSRSEKIKEILQNPYGEISWYFIQTREQFRLAGRCQLVTADELDPVLAVARHDQWAALSDNARKQFSWPAPG----LNQDSDGISEDTRKALYNPPPVPGTSPPPETFVLLLFHPFSVDHLQLRPNPQVRTVHETVQWSINKQPDGIEIRGEGVDESDAWAARRVNP 325          
BLAST of EWM30619.1 vs. NCBI_GenBank
Match: gi|662038185|ref|WP_030006568.1| (pyridoxamine 5'-phosphate oxidase [Synechococcus sp. NKBG042902])

HSP 1 Score: 151.754 bits (382), Expect = 2.029e-41
Identity = 92/212 (43.40%), Postives = 118/212 (55.66%), Query Frame = 0
Query:  100 WVLDLGISMARNNRDAHSRYIQLATVGFGSDDSSVIKPFVRTVVFRGFYNGMDPQDKHLLKIITDARSEKIPQLTLHPDAEIAWYFVKTREQYRLRGRVEIVTPTSKDRHLQAARKQQWNNLSESARAQFLWPYPKHPSPLDQDPSVFSPDIPPTLAS--APPETFCLLLVRVSEVDHLDLKASPQRRTVHARRKGQKEGEEGDWEVTKVNP 309
            W   L  ++ RN    H R+ QLATV      +   KP  RTVVFRGF  G +      LKIITD RSEKI  L   PDAEIAWYF KTREQ+R  G++++VT  S    L  AR+Q W  LS++ARAQFLWP P      D+     + D  PT  +   P   F LLL +V++VDHL+L+ +PQ R ++          +G W+   VNP
Sbjct:   10 WRSPLARALHRNKSQPHHRFFQLATV------TPTGKPRNRTVVFRGFLEGSND-----LKIITDQRSEKINHLATCPDAEIAWYFTKTREQFRFSGQIKLVTAASSSSRLNRARQQTWQALSDAARAQFLWPQPG-----DRRSENLA-DFQPTAVNDQEPVSNFVLLLFQVTKVDHLELRGNPQNRFLY------DLTADGTWQQKTVNP 198          
BLAST of EWM30619.1 vs. NCBI_GenBank
Match: gi|738535102|ref|WP_036483508.1| (pyridoxamine 5'-phosphate oxidase [Myxosarcina sp. GI1])

HSP 1 Score: 150.599 bits (379), Expect = 3.885e-41
Identity = 87/213 (40.85%), Postives = 119/213 (55.87%), Query Frame = 0
Query:  100 WVLDLGISMARNNRDAHSRYIQLATV---GFGSDDSSVIKPFVRTVVFRGFYNGMDPQDKHLLKIITDARSEKIPQLTLHPDAEIAWYFVKTREQYRLRGRVEIVTPTSKDRHLQAARKQQWNNLSESARAQFLWPYPKHPSPLDQDPSVFSPDIPPTLASAPPETFCLLLVRVSEVDHLDLKASPQRRTVHARRKGQKEGEEGDWEVTKVNP 309
            W   L  ++ RN    H RY+QLAT+   G+         P  RTVVFRGF +  +      LKI+ D+RS+KI  +   P +E  WYF KTREQ+RL G + +VT  S D+ LQ AR+  W+NLSE+AR+QF WP   HP     D   F+ D+P    + P   FCLLL+  ++VDHL+L+  PQ RT++          +G W +  VNP
Sbjct:    6 WRSLLARALHRNRSQPHCRYLQLATITPEGY---------PANRTVVFRGFLDNTND-----LKIVVDSRSKKIRDIQHLPHSEGCWYFTKTREQFRLTGSLNLVTAESTDKELQTARQTTWHNLSEAARSQFSWP---HPEKQRADKEAFTVDVPD--ENIPLNNFCLLLLIPTKVDHLELRGEPQSRTLYYL-------HDGSWSIRAVNP 192          
BLAST of EWM30619.1 vs. NCBI_GenBank
Match: gi|1047319089|ref|WP_065715256.1| (pyridoxamine 5'-phosphate oxidase [Synechococcus sp. PCC 7003] >gi|1046567143|gb|ANV85582.1| pyridoxamine 5'-phosphate oxidase [Synechococcus sp. PCC 7003])

HSP 1 Score: 150.214 bits (378), Expect = 6.935e-41
Identity = 90/210 (42.86%), Postives = 119/210 (56.67%), Query Frame = 0
Query:  100 WVLDLGISMARNNRDAHSRYIQLATVGFGSDDSSVIKPFVRTVVFRGFYNGMDPQDKHLLKIITDARSEKIPQLTLHPDAEIAWYFVKTREQYRLRGRVEIVTPTSKDRHLQAARKQQWNNLSESARAQFLWPYPKHPSPLDQDPSVFSPDIPPTLASAPPETFCLLLVRVSEVDHLDLKASPQRRTVHARRKGQKEGEEGDWEVTKVNP 309
            W   L  ++ RN    H R+ QLATV      + V  P  RTVVFRGF +     + + LKIITD RSEKI  L+  PDAEIAWYF KTREQ+R  G++ +VT  S    L+ AR+Q W  LS++ARAQF WP P       ++ + F PD        P   F LLL +V++VDHL+L+ +PQ R ++ R        +G W+   VNP
Sbjct:    8 WRSPLARALHRNKSQPHHRFFQLATV------TPVGTPSNRTVVFRGFLD-----ESNDLKIITDQRSEKINHLSACPDAEIAWYFTKTREQFRFSGQITMVTAQSSSSRLKPARQQTWQALSDAARAQFFWPQPG--DRRSENLADFHPDA--VNDQEPVSNFVLLLFQVTKVDHLELRGNPQNRFLYHR------TADGTWQQNFVNP 196          
BLAST of EWM30619.1 vs. NCBI_GenBank
Match: gi|550277730|ref|WP_022604232.1| (FMN-dependent protein [Rubidibacter lacunae] >gi|549083654|gb|ERN42883.1| PPOX class probable FMN-dependent enzyme, alr4036 family [Rubidibacter lacunae KORDI 51-2])

HSP 1 Score: 150.214 bits (378), Expect = 7.182e-41
Identity = 86/210 (40.95%), Postives = 120/210 (57.14%), Query Frame = 0
Query:  100 WVLDLGISMARNNRDAHSRYIQLATVGFGSDDSSVIKPFVRTVVFRGFYNGMDPQDKHLLKIITDARSEKIPQLTLHPDAEIAWYFVKTREQYRLRGRVEIVTPTSKDRHLQAARKQQWNNLSESARAQFLWPYPKHPSPLDQDPSVFSPDIPPTLASAPPETFCLLLVRVSEVDHLDLKASPQRRTVHARRKGQKEGEEGDWEVTKVNP 309
            W   +  ++ RN  DAH+R+ QLATV          +P  RTVVFRGF+   D      L+++TDARSEK+ Q+   P  E+ WYF KTREQ+R+ GR++ V+  + D  LQ  R+++W +LS+SAR QF+WP PK  +  D D + F    P    + P  TF LLLV    VD L+L+  PQ RT+        + ++G W V  VNP
Sbjct:    6 WRSPIARALHRNRSDAHARFFQLATVMPDG------RPANRTVVFRGFFPNTD-----TLEVVTDARSEKVAQIDRQPWGEVCWYFTKTREQFRIAGRLKFVSADATDADLQRERQERWYDLSDSARLQFIWPQPK--ASRDSDRNAFFVKAPAA-NTKPASTFNLLLVEPVAVDWLELRGDPQNRTLFL------QTDDGKWSVRSVNP 195          
BLAST of EWM30619.1 vs. NCBI_GenBank
Match: gi|1047320375|ref|WP_065716365.1| (pyridoxamine 5'-phosphate oxidase [Synechococcus sp. PCC 8807] >gi|1046571951|gb|ANV90381.1| pyridoxamine 5'-phosphate oxidase [Synechococcus sp. PCC 8807])

HSP 1 Score: 149.828 bits (377), Expect = 1.117e-40
Identity = 92/212 (43.40%), Postives = 119/212 (56.13%), Query Frame = 0
Query:  100 WVLDLGISMARNNRDAHSRYIQLATVGFGSDDSSVIKPFVRTVVFRGFYNGMDPQDKHLLKIITDARSEKIPQLTLHPDAEIAWYFVKTREQYRLRGRVEIVTPTSKDRHLQAARKQQWNNLSESARAQFLWPYPKHPSPLDQDPSVFSPDIPPTLAS--APPETFCLLLVRVSEVDHLDLKASPQRRTVHARRKGQKEGEEGDWEVTKVNP 309
            W   L  ++ RN    H R+ QLATV      +   KP  RTVVFRGF  G +      LKIITD RSEKI  LT  PDAEIAWYF KTREQ+R  G++++VT  S    L  AR+Q W  LS++ARAQFLWP P      D+     + D  PT  +   P   F LLL +V+++DHL+L+ +PQ R ++          +G W+   VNP
Sbjct:   10 WRSPLARALHRNKSQPHHRFFQLATV------TPTGKPRNRTVVFRGFLEGSND-----LKIITDQRSEKISHLTTCPDAEIAWYFTKTREQFRFSGQIKLVTAASPPSPLNRARQQTWQALSDAARAQFLWPQPG-----DRRGENLA-DFQPTAVNDQEPISNFVLLLFQVTKIDHLELRGNPQNRFLY------DLTADGTWQQKTVNP 198          
BLAST of EWM30619.1 vs. NCBI_GenBank
Match: gi|1071032267|ref|WP_069790352.1| (pyridoxamine 5'-phosphate oxidase [Cyanobacterium sp. IPPAS B-1200] >gi|1070624002|gb|OEJ79102.1| pyridoxamine 5'-phosphate oxidase [Cyanobacterium sp. IPPAS B-1200])

HSP 1 Score: 149.443 bits (376), Expect = 1.331e-40
Identity = 85/210 (40.48%), Postives = 119/210 (56.67%), Query Frame = 0
Query:  100 WVLDLGISMARNNRDAHSRYIQLATVGFGSDDSSVIKPFVRTVVFRGFYNGMDPQDKHLLKIITDARSEKIPQLTLHPDAEIAWYFVKTREQYRLRGRVEIVTPTSKDRHLQAARKQQWNNLSESARAQFLWPYPKHPSPLDQDPSVFSPDIPPTLASAPPETFCLLLVRVSEVDHLDLKASPQRRTVHARRKGQKEGEEGDWEVTKVNP 309
            W   L  ++  N    +SRY QLAT+      S+   P  RTVVFRGFY     +D + L+IITD RSEK   L   P +EI WYF KTREQ+R+ G ++I+T   KD+ +  ARKQ W+ LS++A+ QF W    +P     D S+ +PD        P +TFCLL+ +  +VDHL LK +PQ R ++         E+  WE++ +NP
Sbjct:    8 WRSPLAKALHINRAKPYSRYFQLATI------SAEGYPTNRTVVFRGFY-----EDTNWLQIITDIRSEKYQHLQKRPQSEICWYFTKTREQFRINGHIDIITHQEKDQKMLNARKQVWDKLSDNAKIQFTWA---NPGETLNDESIITPDN----LDNPLDTFCLLIFKPQKVDHLQLKGNPQNRYLYQLE------EQNHWEMSPINP 193          
BLAST of EWM30619.1 vs. NCBI_GenBank
Match: gi|1210166280|dbj|BAY85361.1| (pyridoxamine 5'-phosphate oxidase-related FMN-binding protein [Calothrix parasitica NIES-267])

HSP 1 Score: 149.443 bits (376), Expect = 1.345e-40
Identity = 87/210 (41.43%), Postives = 115/210 (54.76%), Query Frame = 0
Query:  100 WVLDLGISMARNNRDAHSRYIQLATVGFGSDDSSVIKPFVRTVVFRGFYNGMDPQDKHLLKIITDARSEKIPQLTLHPDAEIAWYFVKTREQYRLRGRVEIVTPTSKDRHLQAARKQQWNNLSESARAQFLWPYPKHPSPLDQDPSVFSPDIPPTLASAPPETFCLLLVRVSEVDHLDLKASPQRRTVHARRKGQKEGEEGDWEVTKVNP 309
            W   L  ++ +N   AHSRY QLATV    +D +   P  RTVVFRGF      +D +  KIITD RSEKI ++      EI WYF  +REQ+R+ G + I+    +D  LQ  R+  W +LS++AR QF WP   HP     +   FSP  P    + P + FCLLL    +VDHL L+  PQ RT++ R       E G W+V +VNP
Sbjct:    6 WRSFLANALKKNRSQAHSRYFQLATV---RNDGT---PANRTVVFRGFL-----EDTNKFKIITDTRSEKITEIQNRSWGEICWYFTNSREQFRIAGNIIIIDVNYQDSELQTVRESTWQDLSDNARIQFAWP---HPGASRDNQEAFSPQQPD--ENKPLDNFCLLLFEPVKVDHLRLRGEPQNRTIYER------DEMGVWDVKEVNP 193          
BLAST of EWM30619.1 vs. NCBI_GenBank
Match: gi|1011541067|ref|WP_062433814.1| (pyridoxamine 5'-phosphate oxidase [Synechococcus sp. PCC 73109] >gi|975877146|gb|AMA09089.1| pyridoxamine 5'-phosphate oxidase [Synechococcus sp. PCC 73109])

HSP 1 Score: 149.443 bits (376), Expect = 1.477e-40
Identity = 91/212 (42.92%), Postives = 119/212 (56.13%), Query Frame = 0
Query:  100 WVLDLGISMARNNRDAHSRYIQLATVGFGSDDSSVIKPFVRTVVFRGFYNGMDPQDKHLLKIITDARSEKIPQLTLHPDAEIAWYFVKTREQYRLRGRVEIVTPTSKDRHLQAARKQQWNNLSESARAQFLWPYPKHPSPLDQDPSVFSPDIPPTLAS--APPETFCLLLVRVSEVDHLDLKASPQRRTVHARRKGQKEGEEGDWEVTKVNP 309
            W   L  ++ RN    H R+ QLAT+      +   KP  RTVVFRGF  G +      LKIITD RSEKI  LT  PDAEIAWYF KTREQ+R  G++++VT  S    L  AR+Q W  LS++ARAQFLWP P      D+     + D  PT  +   P   F LLL +V+++DHL+L+ +PQ R ++          +G W+   VNP
Sbjct:   10 WRSPLARALHRNKSQPHHRFFQLATI------TPTGKPRNRTVVFRGFLEGSND-----LKIITDQRSEKISHLTTCPDAEIAWYFTKTREQFRFSGQIKLVTAASPPSPLNRARQQTWQALSDAARAQFLWPQPG-----DRRGENLA-DFQPTAVNDQEPVSNFVLLLFQVTKIDHLELRGNPQNRFLY------DLTADGTWQQKTVNP 198          
The following BLAST results are available for this feature:
BLAST of EWM30619.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113295|gb|EWM30619.1|0.000e+0100.00pyridoxamine 5 -phosphate oxidase- fmn-binding pro... [more]
gi|585102819|gb|EWM22322.1|2.784e-4234.68pyridoxamine 5 -phosphate oxidase- fmn-binding pro... [more]
gi|662038185|ref|WP_030006568.1|2.029e-4143.40pyridoxamine 5'-phosphate oxidase [Synechococcus s... [more]
gi|738535102|ref|WP_036483508.1|3.885e-4140.85pyridoxamine 5'-phosphate oxidase [Myxosarcina sp.... [more]
gi|1047319089|ref|WP_065715256.1|6.935e-4142.86pyridoxamine 5'-phosphate oxidase [Synechococcus s... [more]
gi|550277730|ref|WP_022604232.1|7.182e-4140.95FMN-dependent protein [Rubidibacter lacunae] >gi|5... [more]
gi|1047320375|ref|WP_065716365.1|1.117e-4043.40pyridoxamine 5'-phosphate oxidase [Synechococcus s... [more]
gi|1071032267|ref|WP_069790352.1|1.331e-4040.48pyridoxamine 5'-phosphate oxidase [Cyanobacterium ... [more]
gi|1210166280|dbj|BAY85361.1|1.345e-4041.43pyridoxamine 5'-phosphate oxidase-related FMN-bind... [more]
gi|1011541067|ref|WP_062433814.1|1.477e-4042.92pyridoxamine 5'-phosphate oxidase [Synechococcus s... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna52rna52Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications