rna5198, rna5198 (mRNA) Nannochloropsis gaditana

Overview
Namerna5198
Unique Namerna5198
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2519
Alignment locationCM002465.1:395309..395606 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100236g5.4065.mrna
Orig protein idgnl|cribi|Naga_100236g5.4065
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:395309..395606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100236g5gene5018Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5198rna5198-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25489.1cds5186Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5198 ID=rna5198|Name=rna5198|organism=Nannochloropsis gaditana|type=mRNA|length=2519bp
TTTGGTAGTATACGTGTACAATGCTACGCCTTCTTCACATTTCTGTAACA
ACTGCCCTATTGCGAATCACTGTCGATGTGAAGATCCATCATGCCCGGGC
CTTTTTGGCCCTTAAAGATTGCGTCAAATTGATATCGTCCGCTTTTATTG
CTTAATGTAATGATCATCATTATCACAAGGCTCTGGGACTCTAGTCCGGT
CGCACCGGCAACGCTTGGCTGGCGCAAAATGTGTGCTTTTGTCTGGTCGA
AGCCTCTGCGGTCACCGTTGTCCCTCGGAAAATCTCATGCTTCAGTGACT
TGAAGACCGTCAAGAACGTGGGTCGAAAAGTTGTAACGATATGCCTTTGG
ATAGGCCATCTTGCATGGAACAGCGACAGAAGAAGACTTTTTCCCTAATT
TGTAGCACCGAACTGCTTTGTTGTCCACAGCGCAGGTCGGGGCAAAGATA
CTAAAGAACAAGGACCAGCCTTTTCTCCCCCACCCCTTGACCATTGGATG
AACGGTCTTGCGCACACAAAAATGAAGTGAGAACGATGATAAATAAAATT
AATATGCCAATCAACGAACGTTGCTCACTTCATCATTTACTATGTCTAAG
TGCACGTGAGAAATTTACCGTGCTGGGGCAGCAGTGTCCGTATCGGGTAC
CCCCAAAAAATGCCTCATCAAACGGCCAATTAAACATAACATGGAACAGT
GCCAGCCAAGAGTCCACCATGACAGCTGAAACAGAAGCAGTTGCTGCATT
GGAGACCCCGCAATCCACTAAAGAAGAAGCCAATGTCACAGCTGTGTCTG
CTCCAGAGACACCTACGACACAGGGCCCTGCGGATAATGCCAGAGAGGAT
GAGTCGGCCTCAGTCAATGTGAATGTGGAGAACGAAGCGGCTGGTGATGC
TTCGAAACGAGAGGACGCGGCTGCATCTTGTCCTTCGGCAACAACCACTG
GTGAAGCGGAGTCTGCCGAAACGGCTTTGGCGGACTCTGTTGTCACCGCA
ACTACCACGACACCAGGCACTCTGACCGATGCGTTAGCCAATGACATTAA
GAGTCTCATGGAGTTCTACTTTGGCGCGGCCAACTGGCGTAGGGACAAAT
TTTTGCAGGGTGAGGCAGCGAAAGATCCCGAAGGCTATGTGCCCCTGACA
GTCTTCCTCAAGTGCAATAAGCTGAAGAAGTTGACGAGCGACCCCGCTGT
GGTTGTTCAGGCCTTGGAACGAGAACCTGTGAGCAGCCTACTGAGTCTGC
GTGGGGACAAGGCAGCAGTCAAGCGTACTGTGGTCCTTGCACTGGCAACG
GAGGGCGAGGAGGGCAAGGACGACAGTGACCGGCGGACGCTCTTCGTGGA
TGGGATTCCAAAAATACCGGTGGATGGCGCGAAAGAAGTGACCGTCGACG
ACATCGTGGCCATATTCAAGGCGCTGGGACCTGTGGACTTCGTCCGCCTT
TCTCGCGACAAGACGAGCAAGAAGCTGACCGGGGCAGCCTTTGTCGAGTT
TCCCAACGTCGCCGATGCCCAGAGAGTCTTGGCGGTCGAGTGGAAGAGCC
GGCCCATCCCCACCTTAGGGGGGAAGACGAATGTCATCTTGCGCGTACGC
CAATATGAGCGGGATTATAAAAACAAAGTTGCCGCGGCCCAGGGCGGAGC
AACCGTGGGGTCGAAGCGAAAGACTCCTGAGGGGGATGGCGGGGAGGAGA
AGAAGGGGGGGGTCTACGACTTTGAACTGCCGGAGAACTTCGAAAAGGAG
CTGGCGACCTTGGTGCCCCGGCACGTCAAGTTCACTGGGATCAAGTCTGG
TACTCAGTATTACGAGCTGCGGGAGTTCTTCAATAAGTACGGGGCGGTGA
AATACGTCACCTACCAGCCGGACTCTGACGTGGCCCTTGTCAAGTTCTTG
ACCGCAGAAACTGCGGCGAAATTCCTTGGGGACACGCCCGAGGTGAGCGA
CGTAGTATTTAAGGAGGAGAAATTGGGGGTCGTGGCGCCGACAGAGGCGG
AGGTGCGGGAACAGTTGACAGCCAAGAACGCGCGGAAGCGGAGTAATCTG
GAAGCACGCGGTCAGGCCCGTCGGGAAGGAGGGAAGGGTCGGGGAGGTGG
GGGGAAGCGTGGTCGAGGCGCGGGAGGTCGCGGTCGGAAGTGACATCAGG
GGCCGTGCACTTTGAAAAGATGAAATCGTAAGATAGAAGGACCTTCTTGT
AAAGCTGACCTTTTTTGTGGGAGGAGAAGAATTTAGTGAACGTGGGGGAC
TGAGAGACCCAAGGGGGAAAGGCAGGCTGAAAGCAATCTTTATCAGTGAT
TTCGAAGGGACAACGAGTGCCGAAGGGAGGCATTGGTTCGCGACACATCG
ACCGATATTTCTCCATGAAAGGCAATGGCTGCGATGTGAACAGGCACCAG
TTTTTTGCAACCGGAGGCCTACGTAGACAGAAACCTTCGTTTCAAGGGGT
GACACCTTTATTGCAACGTTCAACAATTTAACAAACCCAAAGCATTATGG
ACAAATGCTGTGCTACCTT
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protein sequence of rna5198

>rna5198-protein ID=rna5198-protein|Name=rna5198|organism=Nannochloropsis gaditana|type=polypeptide|length=68bp
MAMTVFKSHSPDPSLKSGPGGASQGETQFAAQCLKKRFRRIMHAFKAFST
NRCHTFIKGELSETYIRG
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mRNA from alignment at CM002465.1:395309..395606-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5198 ID=rna5198|Name=rna5198|organism=Nannochloropsis gaditana|type=mRNA|length=298bp|location=Sequence derived from alignment at CM002465.1:395309..395606- (Nannochloropsis gaditana)
ATGGCCATGACAGTCTCTATCTCTTATTCGAGGCTTCATCAATTCCAAAG
GTGGGGATTCCCCCCTTAGTATTTCTATCGTACACAGAGCTGGGGTATTC
TAGGTTTTCAAAAGTCATTCTCCCGATCCCTCATTGAAATCTGGACCTGG
AGGAGCTAGTCAAGGAGAAACACAATTTGCAGCGCAGTGTCTAAAAAAAC
GATTCAGGCGGATAATGCATGCTTTCAAGGCTTTCTCCACCAATCGATGC
CACACATTTATAAAGGGCGAATTATCAGAAACGTACATAAGGGGATAA
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Coding sequence (CDS) from alignment at CM002465.1:395309..395606-

>rna5198 ID=rna5198|Name=rna5198|organism=Nannochloropsis gaditana|type=CDS|length=414bp|location=Sequence derived from alignment at CM002465.1:395309..395606- (Nannochloropsis gaditana)
GTTTTCAAAAGTCATTCTCCCGATCCCTCATTGAAATCTGGACCTGGAGG
AGCTAGTCAAGGAGAAACACAATTTGCAGCGCAGTGTCTAAAAAAACGAT
TCAGGCGGATAATGCATGCTTTCAAGGCTTTCTCCACCAATCGATGCCAC
ACATTTATAAAGGGCGAATTATCAGAAACGTACATAAGGGGATAAATGGC
CATGACAGTTTTCAAAAGTCATTCTCCCGATCCCTCATTGAAATCTGGAC
CTGGAGGAGCTAGTCAAGGAGAAACACAATTTGCAGCGCAGTGTCTAAAA
AAACGATTCAGGCGGATAATGCATGCTTTCAAGGCTTTCTCCACCAATCG
ATGCCACACATTTATAAAGGGCGAATTATCAGAAACGTACATAAGGGGAT
AAATGGCCATGACA
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Synonyms
Publications