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Properties
| Property Name | Value |
|---|
| Product | Winged helix-turn-helix transcription repressor |
| Orig transcript id | gnl|cribi|Naga_100236g4.4063.mrna |
| Orig protein id | gnl|cribi|Naga_100236g4.4063 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:392717..395235 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5197 ID=rna5197|Name=rna5197|organism=Nannochloropsis gaditana|type=mRNA|length=1490bp
CAAGGATCCTTCGAGGTGACCCTCGCTTGTTTCTCCCGCCCGTCCTTCAA
AAACCACACAATTATGTGCCAGAAAGTCAAAATGAAACACTTCCTTTGAC
TACTCTGCTTTGAACTCGTAATTCACTCCGTTTATGTCTATTTATGTTGT
TCTTGCCACCCTTCTTCCTCAGACAACTGTCCCGAAATCTAAATTAATTA
TGGCCGCTACGGGTTCCGGGGTCCTTCGAGGAGAGGAACATAAAAATTCG
CATGCCTATCAATATGACTTGAATGACAAACTCGCGGAAAACACGAGCTC
AGTCGATGAATTCGACGTGTTTTCCAAGACGGAATTGGATCTTGCGAAGG
CCAAACGCGTCTACCAGGCTTTGAAATCACGTTTGGATAAGGAACGAAAC
ACTTTCCAAGATAAAACAAGTGCACTTGAGGACCGCGTATTTGAATTGGA
AAGTCGACTGCATCAATCGAAGATTGAGCGTCTGGCTAAAGAAGAGGAAG
CGCGTGTCCGACAAAGTACATTGGAAGCCGAGGGGAAACGAGAGCGAACC
CGCAATGGCCTGCTCGAGGAGGAATTGCGTGAGACTAAAGATATTTGGAC
GCAACGACTCACAGAGGAACGCAAAACGTGGCAAAAAAAGCTTTCTGATA
AGGTAGCGTCGCTGCAATCACAGATCGAGGAGGCGAAGACGCTGCATGCT
GAAGAACTCAAGGAAACGAAAGACATTTGGGCCCAGCGCCTGAGCGGGGA
GCGTAAAGCATGGCAACAAAAGGTGTCTGAGAAAGTTGAGCTGCTCCAAG
GCCAAATCGATGACGCCCGCCATCACTACACCAGCCAGATCCAGACTCTG
CAAGAGGATTTACGGGATGCTTTGGCCGGGCGTTGCCAGACGCAAGAAGA
ATTGGATGTGACCAAGACTTTATTGCGTGAGGAGGCTTCACAGCGCCGCT
CCCTGCAGACGGAAGTTGAGGAGCTCAAGGCCAAATATCGTCGGTGCATG
GAGCTTGCTGCCGAGCTCATTTCTATCAAGGATACTGGCGTTACATCCCG
CAGCGGCACCGGCAACAGCTCGAGTATGCCACTTGCAACGGTCCCTACCC
GAACAGCCTCTACGAGCACAAGCACTTCTCGATTCAACTCGTCATCTGTC
CGCTTGTCCACGGAAAACGACGTCCTTAAGAAACAGCTTAAATTGACACA
GGTCTTGCTGGATGAGGAGCTGCGCAAAAATCATTCTCTCCGTCAAAGTT
TGGCACGTTTGAATGTTTAAAACCTTTAAATGTAAGATGCCGCTTTACTG
CCATGCACAGGACATTTGAGAGCAGCAGCCCCGAATTTCGCCTATTCAAT
ACTCGAGGAATTTTAATGTATAAGACAAAGTTTTGCGCGGCCGACAAACG
CATGAGACGAGTGTAAATCGTGTCGCATAACCAAATATATGATGCACACA
AAAGAGAAAGAAAGATCAAGAGATCAACATACAAAACTTT back to topprotein sequence of rna5197 >rna5197-protein ID=rna5197-protein|Name=rna5197|organism=Nannochloropsis gaditana|type=polypeptide|length=535bp
MINKINMPINERCSLHHLLCLSAREKFTVLGQQCPYRVPPKNASSNGQLN
ITWNSASQESTMTAETEAVAALETPQSTKEEANVTAVSAPETPTTQGPAD
NAREDESASVNVNVENEAAGDASKREDAAASCPSATTTGEAESAETALAD
SVVTATTTTPGTLTDALANDIKSLMEFYFGAANWRRDKFLQGEAAKDPEG
YVPLTVFLKCNKLKKLTSDPAVVVQALEREPVSSLLSLRGDKAAVKRTVV
LALATEGEEGKDDSDRRTLFVDGIPKIPVDGAKEVTVDDIVAIFKALGPV
DFVRLSRDKTSKKLTGAAFVEFPNVADAQRVLAVEWKSRPIPTLGGKTNV
ILRVRQYERDYKNKVAAAQGGATVGSKRKTPEGDGGEEKKGGVYDFELPE
NFEKELATLVPRHVKFTGIKSGTQYYELREFFNKYGAVKYVTYQPDSDVA
LVKFLTAETAAKFLGDTPEVSDVVFKEEKLGVVAPTEAEVREQLTAKNAR
KRSNLEARGQARREGGKGRGGGGKRGRGAGGRGRK back to topmRNA from alignment at CM002465.1:392717..395235+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5197 ID=rna5197|Name=rna5197|organism=Nannochloropsis gaditana|type=mRNA|length=2519bp|location=Sequence derived from alignment at CM002465.1:392717..395235+ (Nannochloropsis gaditana)
TTTGGTAGTATACGTGTACAATGCTACGCCTTCTTCACATTTCTGTAACA
ACTGCCCTATTGCGAATCACTGTCGATGTGAAGATCCATCATGCCCGGGC
CTTTTTGGCCCTTAAAGATTGCGTCAAATTGATATCGTCCGCTTTTATTG
CTTAATGTAATGATCATCATTATCACAAGGCTCTGGGACTCTAGTCCGGT
CGCACCGGCAACGCTTGGCTGGCGCAAAATGTGTGCTTTTGTCTGGTCGA
AGCCTCTGCGGTCACCGTTGTCCCTCGGAAAATCTCATGCTTCAGTGACT
TGAAGACCGTCAAGAACGTGGGTCGAAAAGTTGTAACGATATGCCTTTGG
ATAGGCCATCTTGCATGGAACAGCGACAGAAGAAGACTTTTTCCCTAATT
TGTAGCACCGAACTGCTTTGTTGTCCACAGCGCAGGTCGGGGCAAAGATA
CTAAAGAACAAGGACCAgccttttctcccccaccccttgaCCATTGGATG
AACGGTCTTGCGCACACAAAAATGAAGTGAGAACGATGATAAATAAAATT
AATATGCCAATCAACGAACGTTGCTCACTTCATCATTTACTATGTCTAAG
TGCACGTGAGAAATTTACCGTGCTGGGGCAGCAGTGTCCGTATCGGgtac
ccccaaaaaatgcctCATCAAACGGCCAATTAAACATAACATGGAACAGT
GCCAGCCAAGAGTCCACCATGACAGCTGAAACAGAAGCAGTTGCTGCATT
GGAGACCCCGCAATCCACTAAAGAAGAAGCCAATGTCACAGCTGTGTCTG
CTCCAGAGACACCTACGACACAGGGCCCTGCGGATAATGCCAGAGAGGAT
GAGTCGGCCTCAGTCAATGTGAATGTGGAGAACGAAGCGGCTGGTGATGC
TTCGAAACGAGAGGACGCGGCTGCATCTTGTCCTTCGGCAACAACCACTG
GTGAAGCGGAGTCTGCCGAAACGGCTTTGGCGGACTCTGTTGTCACCGCA
ACTACCACGACACCAGGCACTCTGACCGATGCGTTAGCCAATGACATTAA
GAGTCTCATGGAGTTCTACTTTGGCGCGGCCAACTGGCGTAGGGACAAAT
TTTTGCAGGGTGAGGCAGCGAAAGATCCCGAAGGCTATGTGCCCCTGACA
GTCTTCCTCAAGTGCAATAAGCTGAAGAAGTTGACGAGCGACCCCGCTGT
GGTTGTTCAGGCCTTGGAACGAGAACCTGTGAGCAGCCTACTGAGTCTGC
GTGGGGACAAGGCAGCAGTCAAGCGTACTGTGGTCCTTGCACTGGcaacg
gagggcgaggagggcaaggacgacaGTGACCGGCGGACGCTCTTCGTGGA
TGGGATTCCAAAAATACCGGTGGATGGCGCGAAAGAAGTGACCGTCGACG
ACATCGTGGCCATATTCAAGGCGCTGGGACCTGTGGACTTCGTCCGCCTT
TCTCGCGACAAGACGAGCAAGAAGCTGACCGGGGCAGCCTTTGTCGAGTT
TCCCAACGTCGCCGATGCCCAGAGAGTCTTGGCGGTCGAGTGGAAGAGcc
ggcccatccccaccttaggggggaagacgaatgTCATCTTGCGCGTACGC
CAATATGAGCGGGATTATAAAAACAAAGTTGCCGCGGCCCAGGGCGGAGC
AACCGTGGGGTCGAAGCGAAAGACTCCtgagggggatggcggggaggaga
agaaggggggggtctACGACTTTGAACTGCCGGAGAACTTCGAAAAGGAG
CTGGCGACCTTGGTGCCCCGGCACGTCAAGTTCACTGGGATCAAGTCTGG
TACTCAGTATTACGAGCTGCGGGAGTTCTTCAATAAGTACGGGGCGGTGA
AATACGTCACCTACCAGCCGGACTCTGACGTGGCCCTTGTCAAGTTCTTG
ACCGCAGAAACTGCGGCGAAATTCCTTGGGGACACGCCCGAGGTGAGCGA
CGTAGTATTtaaggaggagaaattggGGGTCGTGGCGCCGAcagaggcgg
aggtgcgGGAACAGTTGACAGCCAAGAACGCGCGGAAGCGGAGTAATCTG
GAAGCACGCGGTCAGGCCcgtcgggaaggagggaagggtcggggaggtgg
ggggaagcgTGGTCGAGGCGCGGGAGGTCGCGGTCGGAAGTGACATCAGG
GGCCGTGCACTTTGAAAAGATGAAATCGTAAGATAGAAGGACCTTCTTGT
AAAGCTGACCTTTtttgtgggaggagaagaatttAGTGAACGTGGGGGAC
TGAGAGAcccaagggggaaaggcaggcTGAAAGCAATCTTTATCAGTGAT
TTCGAAGGGACAACGAGTGCCGAAGGGAGGCATTGGTTCGCGACACATCG
ACCGATATTTCTCCATGAAAGGCAATGGCTGCGATGTGAACAGGCACCAG
TTTTTTGCAACCGGAGGCCTACGTAGACAGAAACCTTCGTTTCAAGGGGT
GACACCTTTATTGCAACGTTCAACAATTTAACAAACCCAAAGCATTATGG
ACAAATGCTGTGCTACCTT back to topCoding sequence (CDS) from alignment at CM002465.1:392717..395235+ >rna5197 ID=rna5197|Name=rna5197|organism=Nannochloropsis gaditana|type=CDS|length=1608bp|location=Sequence derived from alignment at CM002465.1:392717..395235+ (Nannochloropsis gaditana)
ATGATAAATAAAATTAATATGCCAATCAACGAACGTTGCTCACTTCATCA
TTTACTATGTCTAAGTGCACGTGAGAAATTTACCGTGCTGGGGCAGCAGT
GTCCGTATCGGgtacccccaaaaaatgcctCATCAAACGGCCAATTAAAC
ATAACATGGAACAGTGCCAGCCAAGAGTCCACCATGACAGCTGAAACAGA
AGCAGTTGCTGCATTGGAGACCCCGCAATCCACTAAAGAAGAAGCCAATG
TCACAGCTGTGTCTGCTCCAGAGACACCTACGACACAGGGCCCTGCGGAT
AATGCCAGAGAGGATGAGTCGGCCTCAGTCAATGTGAATGTGGAGAACGA
AGCGGCTGGTGATGCTTCGAAACGAGAGGACGCGGCTGCATCTTGTCCTT
CGGCAACAACCACTGGTGAAGCGGAGTCTGCCGAAACGGCTTTGGCGGAC
TCTGTTGTCACCGCAACTACCACGACACCAGGCACTCTGACCGATGCGTT
AGCCAATGACATTAAGAGTCTCATGGAGTTCTACTTTGGCGCGGCCAACT
GGCGTAGGGACAAATTTTTGCAGGGTGAGGCAGCGAAAGATCCCGAAGGC
TATGTGCCCCTGACAGTCTTCCTCAAGTGCAATAAGCTGAAGAAGTTGAC
GAGCGACCCCGCTGTGGTTGTTCAGGCCTTGGAACGAGAACCTGTGAGCA
GCCTACTGAGTCTGCGTGGGGACAAGGCAGCAGTCAAGCGTACTGTGGTC
CTTGCACTGGcaacggagggcgaggagggcaaggacgacaGTGACCGGCG
GACGCTCTTCGTGGATGGGATTCCAAAAATACCGGTGGATGGCGCGAAAG
AAGTGACCGTCGACGACATCGTGGCCATATTCAAGGCGCTGGGACCTGTG
GACTTCGTCCGCCTTTCTCGCGACAAGACGAGCAAGAAGCTGACCGGGGC
AGCCTTTGTCGAGTTTCCCAACGTCGCCGATGCCCAGAGAGTCTTGGCGG
TCGAGTGGAAGAGccggcccatccccaccttaggggggaagacgaatgTC
ATCTTGCGCGTACGCCAATATGAGCGGGATTATAAAAACAAAGTTGCCGC
GGCCCAGGGCGGAGCAACCGTGGGGTCGAAGCGAAAGACTCCtgaggggg
atggcggggaggagaagaaggggggggtctACGACTTTGAACTGCCGGAG
AACTTCGAAAAGGAGCTGGCGACCTTGGTGCCCCGGCACGTCAAGTTCAC
TGGGATCAAGTCTGGTACTCAGTATTACGAGCTGCGGGAGTTCTTCAATA
AGTACGGGGCGGTGAAATACGTCACCTACCAGCCGGACTCTGACGTGGCC
CTTGTCAAGTTCTTGACCGCAGAAACTGCGGCGAAATTCCTTGGGGACAC
GCCCGAGGTGAGCGACGTAGTATTtaaggaggagaaattggGGGTCGTGG
CGCCGAcagaggcggaggtgcgGGAACAGTTGACAGCCAAGAACGCGCGG
AAGCGGAGTAATCTGGAAGCACGCGGTCAGGCCcgtcgggaaggagggaa
gggtcggggaggtggggggaagcgTGGTCGAGGCGCGGGAGGTCGCGGTC
GGAAGTGA back to top
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