EWM25487.1, cds5185 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25487.1 vs. NCBI_GenBank
Match: gi|585107252|gb|EWM25487.1| (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana]) HSP 1 Score: 1088.17 bits (2813), Expect = 0.000e+0 Identity = 535/535 (100.00%), Postives = 535/535 (100.00%), Query Frame = 0
Query: 1 MINKINMPINERCSLHHLLCLSAREKFTVLGQQCPYRVPPKNASSNGQLNITWNSASQESTMTAETEAVAALETPQSTKEEANVTAVSAPETPTTQGPADNAREDESASVNVNVENEAAGDASKREDAAASCPSATTTGEAESAETALADSVVTATTTTPGTLTDALANDIKSLMEFYFGAANWRRDKFLQGEAAKDPEGYVPLTVFLKCNKLKKLTSDPAVVVQALEREPVSSLLSLRGDKAAVKRTVVLALATEGEEGKDDSDRRTLFVDGIPKIPVDGAKEVTVDDIVAIFKALGPVDFVRLSRDKTSKKLTGAAFVEFPNVADAQRVLAVEWKSRPIPTLGGKTNVILRVRQYERDYKNKVAAAQGGATVGSKRKTPEGDGGEEKKGGVYDFELPENFEKELATLVPRHVKFTGIKSGTQYYELREFFNKYGAVKYVTYQPDSDVALVKFLTAETAAKFLGDTPEVSDVVFKEEKLGVVAPTEAEVREQLTAKNARKRSNLEARGQARREGGKGRGGGGKRGRGAGGRGRK 535
MINKINMPINERCSLHHLLCLSAREKFTVLGQQCPYRVPPKNASSNGQLNITWNSASQESTMTAETEAVAALETPQSTKEEANVTAVSAPETPTTQGPADNAREDESASVNVNVENEAAGDASKREDAAASCPSATTTGEAESAETALADSVVTATTTTPGTLTDALANDIKSLMEFYFGAANWRRDKFLQGEAAKDPEGYVPLTVFLKCNKLKKLTSDPAVVVQALEREPVSSLLSLRGDKAAVKRTVVLALATEGEEGKDDSDRRTLFVDGIPKIPVDGAKEVTVDDIVAIFKALGPVDFVRLSRDKTSKKLTGAAFVEFPNVADAQRVLAVEWKSRPIPTLGGKTNVILRVRQYERDYKNKVAAAQGGATVGSKRKTPEGDGGEEKKGGVYDFELPENFEKELATLVPRHVKFTGIKSGTQYYELREFFNKYGAVKYVTYQPDSDVALVKFLTAETAAKFLGDTPEVSDVVFKEEKLGVVAPTEAEVREQLTAKNARKRSNLEARGQARREGGKGRGGGGKRGRGAGGRGRK
Sbjct: 1 MINKINMPINERCSLHHLLCLSAREKFTVLGQQCPYRVPPKNASSNGQLNITWNSASQESTMTAETEAVAALETPQSTKEEANVTAVSAPETPTTQGPADNAREDESASVNVNVENEAAGDASKREDAAASCPSATTTGEAESAETALADSVVTATTTTPGTLTDALANDIKSLMEFYFGAANWRRDKFLQGEAAKDPEGYVPLTVFLKCNKLKKLTSDPAVVVQALEREPVSSLLSLRGDKAAVKRTVVLALATEGEEGKDDSDRRTLFVDGIPKIPVDGAKEVTVDDIVAIFKALGPVDFVRLSRDKTSKKLTGAAFVEFPNVADAQRVLAVEWKSRPIPTLGGKTNVILRVRQYERDYKNKVAAAQGGATVGSKRKTPEGDGGEEKKGGVYDFELPENFEKELATLVPRHVKFTGIKSGTQYYELREFFNKYGAVKYVTYQPDSDVALVKFLTAETAAKFLGDTPEVSDVVFKEEKLGVVAPTEAEVREQLTAKNARKRSNLEARGQARREGGKGRGGGGKRGRGAGGRGRK 535
BLAST of EWM25487.1 vs. NCBI_GenBank
Match: gi|340379637|ref|XP_003388333.1| (PREDICTED: lupus La protein-like [Amphimedon queenslandica]) HSP 1 Score: 103.219 bits (256), Expect = 1.891e-20 Identity = 91/313 (29.07%), Postives = 148/313 (47.28%), Query Frame = 0
Query: 150 DSVVTATTTTPGTLTDALANDIKSLMEFYFGAANWRRDKFLQGEAAKDPEGYVPLTVFLKCNKLKKLTSDPAVVVQALEREPVSSLLSLRGDKAAVKRTV---VLALATEGEEGKDDSDRRTLFVDGIPKIPVDGAKEVTVDDIVAIFKALGPVDFVRLSRDKTSKKLTGAAFVEFPNVADAQRVL--AVEWKSRP-IPTLGGKTNVILR--VRQYERDYKNKVAAAQGGATVGSKRKTPEGDGGEEKKGGVYDFELPENFEKELATLVPRHVKFTGIKSGTQYYELREFFNKYGAVKYVTYQPDSDVALVKF 454
D V +A+T++ + D L I +EFYFG N RDKFLQ + ++ +G+V L+V L ++LK L++D +++ AL R+ S LL + D VKR V L+ E + D RTL++ G P K+ T+DDI G + +R+ +D K+ G+ FVE+ V +VL E K + + T+ K + R + E+ +++V ++ G AT SK + G + +E A L FTG GT L+E+F ++ V +V +Q ++F
Sbjct: 7 DDVPSASTSS--SEPDDLEKKIIRQIEFYFGDRNLSRDKFLQNKIKENEDGWVELSVLLTFSRLKALSTDCSLIAGAL-RKSTSGLLEVSEDGLKVKRKSSDPVPTLSLLSPEDRKDMSNRTLYMKGFP-------KDSTLDDIQDFLLPFGETEMIRMKKD-LDKQFKGSIFVEYKLVDSISKVLEKKAELKYKDELLTVETKQDYFKRKDAERKEKKAQSRVESSSGSATETSK----------DTNGTTF-------IRQEGAIL-----HFTGCGDGTTRETLKEYFRQFATVAWVDFQKGDTEGYIRF 286
BLAST of EWM25487.1 vs. NCBI_GenBank
Match: gi|260837431|ref|XP_002613707.1| (hypothetical protein BRAFLDRAFT_271338 [Branchiostoma floridae] >gi|229299096|gb|EEN69716.1| hypothetical protein BRAFLDRAFT_271338, partial [Branchiostoma floridae]) HSP 1 Score: 97.8265 bits (242), Expect = 1.478e-19 Identity = 68/190 (35.79%), Postives = 101/190 (53.16%), Query Frame = 0
Query: 167 LANDIKSLMEFYFGAANWRRDKFLQGEAAKDPEGYVPLTVFLKCNKLKKLTSDPAVVVQALEREPVSSLLSLRGDKAAVKRTVVLALATEGEEGKDDSDRRTLFVDGIPKIPVDGAKEVTVDDIVAIFKALGPVDFVRLSRDKTSKKLTGAAFVEFPNVADAQRVLAVEWKSRPIPTLGGKTNVILRVRQ 356
L N ++ MEFYF AN RD+FL+ E K+ EG++ L+V L NK+K+LTSDP +VV+ L S LL +K V+RT LA + +E RT++V+ +P+ VT + I F G V ++ L R KTS G AF+EF +A++ A + + P + GK V + R+
Sbjct: 32 LQNAVREQMEFYFSDANLHRDRFLKKEMEKEKEGWIDLSVILSFNKMKQLTSDPKMVVKCLRN---SELLQANTEKTKVRRTKPLAEPVQMDE-------RTVYVECLPRT-------VTHEWIKTTFSVCGKVAYISLPRFKTSGDTKGFAFIEFEKQEEAEK--ACKMLNNPPDHMVGKMGVFPKTRK 202
BLAST of EWM25487.1 vs. NCBI_GenBank
Match: gi|1027007705|ref|XP_016606346.1| (hypothetical protein SPPG_06699 [Spizellomyces punctatus DAOM BR117] >gi|907092140|gb|KNC98306.1| hypothetical protein SPPG_06699 [Spizellomyces punctatus DAOM BR117]) HSP 1 Score: 101.293 bits (251), Expect = 2.750e-19 Identity = 94/373 (25.20%), Postives = 165/373 (44.24%), Query Frame = 0
Query: 106 ESASVNVNVENEAAGDASK---REDAAASCPSATTTGEAESAETALADSVVTATTTTPGTLTDALANDIKSLMEFYFGAANWRRDKFLQGEAAKDPEGYVPLTVFLKCNKLKKLTSDPAVVVQALEREPVSSLLSLRGDKAAVKRTVVLALATEGEEGKDDSDRRTLFVDGIPKIPVDGAKEVTVDDIVAIFKALGPVDFVRLSRDKTSKKLTGAAFVEFPNVADAQRV--LAVEWKSRPIPTLGGKTNVILRVRQYERDYKNKVAAAQGGATVGSKRKTPEGDGGEEKKGGVYDFELP---ENF--EKELATLVPRH----VKFTGIKSGTQYYELREFFNKYGAVKYVTYQPDSDVALVKFLTAETAAKFL 464
E S NV VE+E + + + A A+ P+ E S T D V T +D + I +E+YFG AN RDKFL ++PEG+V + LK N+L+ ++ DP V+ AL + + LL + D V+R L + + R+T++V G P +D+I F G V VR+ RD+ ++ G+ FVEF + A+ V + +E++ P+ + V +++R+ +D Q G+ + +R P + + +DF P N+ ++ L+ R F G+ T +++ FF ++ V+++ + V F + AA+ +
Sbjct: 2 EVNSANVEVESEVQPETTTTPLSDSAHATTPTPPVPVET-SQPTVPVDEVTVPVPVNLETASDEVKAKILKQVEYYFGDANLPRDKFLISTINENPEGWVSIETLLKFNRLRSISDDPLVIADALRQS--AELLEVSDDGKLVRRRTQL-------KPRFAVHRKTIYVKGFPP-----ELSNIIDEIEGFFSNFGKVHNVRIRRDE-NRAFKGSVFVEFKEIPAAENVSQMQLEFQGHPLVIMMKDEYVNMKLREGPKD--------QDGSHMHVQR--PYEEFPQLNYLERHDFRRPGAHSNYGNRQQGPALLERPEGALAFFEGVAPMTLREDIQHFFARHERVRWINFNIGEQKGSVMFSYPDAAARVV 348
BLAST of EWM25487.1 vs. NCBI_GenBank
Match: gi|734544407|gb|KHN73226.1| (Lupus La protein [Toxocara canis]) HSP 1 Score: 98.9821 bits (245), Expect = 1.459e-18 Identity = 86/313 (27.48%), Postives = 138/313 (44.09%), Query Frame = 0
Query: 167 LANDIKSLMEFYFGAANWRRDKFLQGEAAKDPEGYVPLTVFLKCNKLKKLTSDPAVVVQALEREPVSSLLSLRGDKAAVKRTVVLALATEGEEGKDDSDRRTLFVDGIPKIPVDGAKEVTVDDIVAIFKALGPVDFVRLSRDK-TSKKLTGAAFVEFPNVADAQRVLAVEWKSRPIPTLGGKTNVILRVRQYERDYKNKVAAAQGGATVGSKRKTPEGDGGEEKKGGVYDFELPENFEKELATLVPRHVK-----FTGI-KSGTQYYELREFFNKYGAVKYVTYQPDSDVALVKFLTAETAAKFLGDTPEVSD 472
L I +EFYFG N RD+FLQ E KD G+VPLT +K N+L ++++D ++ +AL+ S L+ + DK+ ++R +AL E RT+++ G ++ T+D I K G VD V + R+K ++ G+AFV F R + + + + G + + +Y + ++ R+ + + KK D EKE VK G+ K G +++EFF K+G V YV +Q SD A ++F E AK D +D
Sbjct: 73 LTKKIIEQVEFYFGDINLPRDRFLQDELKKDG-GWVPLTTMIKFNRLAQMSTDVDLIAEALKH---SKLIEVSEDKSKIRRDPEMALPENSLEYWQAIKHRTVYIKGFK-------EDCTLDGIQKFVKQFGEVDNVLMRREKGAERRFKGSAFVTFKT-----REMCEHFINNDVKQFEGSDLIKMMQDEYWAMKQQQM----------KDRRVADRNAKLAKKAAEVD-------EKETGKATAHFVKGMILSIEGLPKEGVDLKKIKEFFRKFGDVAYVVFQGGSDKAQIRFSGEEGCAKKAWDEAVAAD 352
BLAST of EWM25487.1 vs. NCBI_GenBank
Match: gi|1126221103|ref|XP_019644772.1| (PREDICTED: la-related protein 7-like [Branchiostoma belcheri]) HSP 1 Score: 100.138 bits (248), Expect = 1.615e-18 Identity = 65/190 (34.21%), Postives = 102/190 (53.68%), Query Frame = 0
Query: 167 LANDIKSLMEFYFGAANWRRDKFLQGEAAKDPEGYVPLTVFLKCNKLKKLTSDPAVVVQALEREPVSSLLSLRGDKAAVKRTVVLALATEGEEGKDDSDRRTLFVDGIPKIPVDGAKEVTVDDIVAIFKALGPVDFVRLSRDKTSKKLTGAAFVEFPNVADAQRVLAVEWKSRPIPTLGGKTNVILRVRQ 356
L N ++ MEFYF AN RD+FL+ E K+ EG++ L+V L NK+K+LTSDP +VV++L S L+ + +K V+RT LA + D RT++V+ +P+ VT + I F G V ++ L R +T+ G AF+EF +A++ A + + P + GK V + R+
Sbjct: 32 LQNAVREQMEFYFSDANLHRDRFLKKEMEKEKEGWIDLSVILSFNKMKQLTSDPKMVVKSLRN---SELVQVNAEKTKVRRTKPLAEPVQ-------MDERTVYVECLPRA-------VTHEWIRTTFSVCGKVTYISLPRYQTTGDPKGFAFIEFEKQEEAEK--ACKMLNNPPDHMAGKMGVFPKTRK 202
BLAST of EWM25487.1 vs. NCBI_GenBank
Match: gi|769856004|ref|XP_011639580.1| (PREDICTED: la-related protein 7 [Pogonomyrmex barbatus]) HSP 1 Score: 99.3673 bits (246), Expect = 3.220e-18 Identity = 72/222 (32.43%), Postives = 111/222 (50.00%), Query Frame = 0
Query: 166 ALANDIKSLMEFYFGAANWRRDKFLQGEAAKDPEGYVPLTVFLKCNKLKKLTSDPAVVVQALEREPVSSLLSLRGDKAAVKRTVVLALATEGEEGKDDSDRRTLFVDGIPKIPVDGAKEVTVDDIVAIFKALGPVDFVRLSRDKTSKKLTGAAFVEFPNVADAQRVLAVEWKSRPIPTLGGKTNVILRVRQYERDYKNKVAAAQGGATVGSKRKTPEGDGGE 387
AL I MEFYF AN +D++L G + P Y+ L VF +CNKL++LT+D + +ALE S++L + D V R + EGK++ D T++V +P P + D +++IF GPVD+V + R K+++K+ G AFVEF + AQ + + K + N +L + +E K G + SK+KT D E
Sbjct: 49 ALHASILKQMEFYFSDANLSKDRYLSGLLKESP--YINLEVFTRCNKLRELTTDINRIAKALEG---STILKVSEDGTKVSRITPI-------EGKENVDECTVYVQNLP--P-----DADHDWLISIFSKFGPVDYVSIPRYKSNRKIKGFAFVEFDLPSSAQECIKMFRKKGCVLPSYTSPNEVLSITTFEEPKK------IIGYVIESKKKTKNNDTLE 245
BLAST of EWM25487.1 vs. NCBI_GenBank
Match: gi|1126188566|ref|XP_019627109.1| (PREDICTED: lupus La protein homolog [Branchiostoma belcheri]) HSP 1 Score: 96.2857 bits (238), Expect = 1.044e-17 Identity = 56/170 (32.94%), Postives = 93/170 (54.71%), Query Frame = 0
Query: 166 ALANDIKSLMEFYFGAANWRRDKFLQGEAAKDPEGYVPLTVFLKCNKLKKLTSDPAVVVQALEREPVSSLLSLRGDKAAVKRTVVLALATEGEEGKDDSDRRTLFVDGIPKIPVDGAKEVTVDDIVAIFKALGPVDFVRLSRDKTSKKLTGAAFVEFPNVADAQRVLAVE 335
L I ME+YFG N RD+FLQGE KD +G+VPL +K N+LK L+ D V+ AL++ P + L+ + DK V+R +L E+ + ++ RT++ G ++ ++DDI F+ G V+ V + R++ +K G+ F F ++ DA++ + E
Sbjct: 24 GLERKIYQQMEYYFGDHNLTRDRFLQGEIKKD-DGWVPLETLVKFNRLKALSDDFEVICAALQKSP-NQLMEVSEDKTKVRRLPSKSLPKNTEQWRSENKARTVYCKGF-------GQDDSLDDIQEFFQDKGKVETVFMRRNE-NKDFKGSVFATFSSLDDAKKFVEAE 183
BLAST of EWM25487.1 vs. NCBI_GenBank
Match: gi|857979043|emb|CEO95281.1| (hypothetical protein PBRA_004047 [Plasmodiophora brassicae]) HSP 1 Score: 95.5153 bits (236), Expect = 1.432e-17 Identity = 106/387 (27.39%), Postives = 162/387 (41.86%), Query Frame = 0
Query: 162 TLTDALANDIKSLMEFYFGAANWRRDKFLQGEAAKDPEGYVPLTVFLKCNKLKKLTSDPAVVVQALEREPVSSLLSLRGDKAAVKRTVVLALATEGEEGKD--DSDRRTLFVDGIPKIPVDGAKEVTVDDIVAIFKALGPVDFVRLSR-DKTSKKLTGAAFVEFPNVADAQRVLAVEWKSRPIPTLGGKTNVILRVRQYERDYKNKVAAAQGGATV---GSKR--------------KTPEGDGGEEKKGGVYDFELPENFEKELATLVPRHVKFTGIKSGTQYYELREFFNKYGAVKYVTYQPDSDVALVKFLTAETAAKFLGDTPEVSDVVFKEEKLGVVAPTEAEVREQLTAKNARKRSNLEARGQARREGGKGRGGGGKRGRG 528
T +DA DI +EFYF +N RRDKF++ E K +G +P++V L K++ +TS + A+ S L + D A+ R + EE D D D RT++V+ +P + T+D + A G V+ VR+ + + G AFVEF +VA ++ + L K+ + + + + K + AA + G T KR K + +E+ D PE ++ R V+ TG SG + L F G VK+V + P S+ A ++F TAE A + E +V F E L TE E K + AR RR+ +G GKR R
Sbjct: 5 TTSDA---DIVRQVEFYFSDSNLRRDKFMK-ETLKQNDGSMPVSVLLTFKKVQAMTSSVEAIANAIR--SGSEALKVSEDGTAISRATPFS-----EESLDQADFDARTVYVNHVPM-------DATIDSLTETMSAFGKVNMVRIPKATDEGRPHRGFAFVEFADVASV---------AKAVEALPKKSARKVESEEAQENEKPENAAEEQGETTPAEADKRDDVKAMYALSHADWKKVDEKRKKERALKTQDAAQPEKVHEK-----DRLVRITGDLSGAKREALHSLFTPIGDVKFVDFPPSSEFATIRFATAEIAKNVVEKVSE-GNVKFGENVLSAALLTEEEQEAYWKKVEEDKAARDIARQTGRRDKRQGNKHQGKRKRA 358
BLAST of EWM25487.1 vs. NCBI_GenBank
Match: gi|947272722|ref|XP_014445272.1| (PREDICTED: lupus La protein [Tupaia chinensis] >gi|947272726|ref|XP_014445273.1| PREDICTED: lupus La protein [Tupaia chinensis] >gi|444721549|gb|ELW62280.1| Lupus La protein [Tupaia chinensis]) HSP 1 Score: 94.7449 bits (234), Expect = 2.374e-17 Identity = 79/279 (28.32%), Postives = 138/279 (49.46%), Query Frame = 0
Query: 166 ALANDIKSLMEFYFGAANWRRDKFLQGEAAKDPEGYVPLTVFLKCNKLKKLTSDPAVVVQALEREPVSSLLSLRGDKAAVKRTVVLALATEGEEGKDDSDRRTLFVDGIPKIPVDGAKEVTVDDIVAIFKALGPVDFVRLSRDKTSKKLTGAAFVEFPNVADAQRVLAVEWKSRPIPTLGGKTNVILRVRQYERDYKNKVAAAQGGATVGSKRKTPEGDGGEEKKGGVYDFELPENFEKELATLVPRHVKFTG-IKSGTQYYELREFFNKYGAVKYVTY 443
AL I +E+YFG N RDKFL+ E K EG+VPL + +K N+L +LT+D V+V+AL + + L+ + DK ++R+ L +E K+D R++++ G P + T+DDI + G + +++ R K G+ F F N+A A++ + P G +IL ++ DY K A + V +K + EEK+ D E+ ++ E+++ L +KF+G + T +L F+ +G +K++ +
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLK-EQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSK-AELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFP-------TDATLDDIKEWLEGKGEILNIQMRRT-LQKAFKGSIFAVFENIASAKKFVET-----PGQKYKGTEMLIL----FKEDYFAKKNAERRQHKVEAKLRAKREQ--EEKQKLAEDAEM-KSLEEKIGCL----LKFSGDLDDQTCREDLHILFSNHGEIKWIDF 264 The following BLAST results are available for this feature:
BLAST of EWM25487.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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