rna5196, rna5196 (mRNA) Nannochloropsis gaditana

Overview
Namerna5196
Unique Namerna5196
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length490
Alignment locationCM002465.1:389835..391500 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100236g3.4062.mrna
Orig protein idgnl|cribi|Naga_100236g3.4062
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:389835..391500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100236g3gene5016Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5196rna5196-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25486.1cds5184Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5196 ID=rna5196|Name=rna5196|organism=Nannochloropsis gaditana|type=mRNA|length=490bp
ATGTACTCGAGACAAAGTGTACCACTTGCCCGCCATCCTTGCACTCGGGG
CATTAAGCTAGGCAATGACGTTTTACGGACGCCAGCTTTTTTGCGCATTG
AAAATTACATTTTCCATACCCCTGATTTCTTCCAACGAAGAGATCGACTT
TTTAGCTACCCTCGCGGTAAAACCCCATTACCCGCACCCCTTCTTCTCTC
CACGCAACACGATATGGGTGCTGGGAGCAGGAGCGGACATCATGAGCCGT
CGCGTGTAGCGTCTTCGAAAATTTTCCTCAGGCGTGGGGTCGATATCTTC
GCTTTAAAGGAGAAAATCTTGATACAACATCAAAAGTGCACATCGGGTCC
TCTGCCTTCCGTGTCAGGCATGCCGATTGTTTCCATAACTAACGTTATCT
ACGAGTAATAATATCTGAGCTCCTCACAAATGATGTTTCAATCGCGTCAA
TACACGATGATAATGAAGTAATCTGAACAAGAAAGCCGGC
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protein sequence of rna5196

>rna5196-protein ID=rna5196-protein|Name=rna5196|organism=Nannochloropsis gaditana|type=polypeptide|length=378bp
MSIYVVLATLLPQTTVPKSKLIMAATGSGVLRGEEHKNSHAYQYDLNDKL
AENTSSVDEFDVFSKTELDLAKAKRVYQALKSRLDKERNTFQDKTSALED
RVFELESRLHQSKIERLAKEEEARVRQSTLEAEGKRERTRNGLLEEELRE
TKDIWTQRLTEERKTWQKKLSDKVASLQSQIEEAKTLHAEELKETKDIWA
QRLSGERKAWQQKVSEKVELLQGQIDDARHHYTSQIQTLQEDLRDALAGR
CQTQEELDVTKTLLREEASQRRSLQTEVEELKAKYRRCMELAAELISIKD
TGVTSRSGTGNSSSMPLATVPTRTASTSTSTSRFNSSSVRLSTENDVLKK
QLKLTQVLLDEELRKNHSLRQSLARLNV
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mRNA from alignment at CM002465.1:389835..391500-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5196 ID=rna5196|Name=rna5196|organism=Nannochloropsis gaditana|type=mRNA|length=1666bp|location=Sequence derived from alignment at CM002465.1:389835..391500- (Nannochloropsis gaditana)
CAAGGATCCTTCGAGGTGACCCTCGCTTGTTTCTCCCGCCCGTCCTTCAA
AAACCACACAATTATGTGCCAGAAAGTCAAAATGAAACACTTCCTTTGAC
TACTCTGCTTTGAACTCGTAATTCACTCCGTTTATGTCTATTTATGTTGT
TCTTGCCACCCTTCTTCCTCAGACAACTGTCCCGAAATCTAAATTAATTA
TGGCCGCTACGGGTTCCGGGGTCCTTCGAGGAGAGGAACATAAAAATTCG
CATGCCTATCAATATGACTTGAATGACAAACTCGCGGAAAACACGAGCTC
AGTCGATGAATTCGACGTGTTTTCCAAGACGGAATTGGATCTTGCGAAGG
CCAAACGCGTCTACCAGGCTTTGAAATCACGTTTGGATAAGGAACGAAAC
ACTTTCCAAGATAAAACAAGTGCACTTGAGGACCGCGTATTTGAATTGGA
AAGTCGACTGCATCAATCGAAGATTGAGCGTCTGGCTAAAGAAGAGGAAG
CGCGTGTCCGACAAAGTACATTGGAAGCCGAGGGGAAACGAGAGCGAACC
CGCAATGGCCTGCTCGAGGAGGAATTGCGTGAGACTAAAGATATTTGGAC
GCAACGACTCACAGAGGAACGCAAAACGTGGCAAAAAAAGCTTTCTGATA
AGGTAGCGTCGCTGCAATCACAGATCGAGGAGGCGAAGACGCTGCATGCT
GAAGAACTCAAGGAAACGAAAGACATTTGGGCCCAGCGCCTGAGCGGGGA
GCGTAAAGCATGGCAACAAAAGGTGTCTGAGAAAGTTGAGCTGCTCCAAG
GCCAAATCGATGACGCCCGCCATCACTACACCAGCCAGATCCAGACTCTG
CAAGAGGATTTACGGGATGCTTTGGCCGGGCGTTGCCAGGTAAGTTTCAT
AACAACAACCTATAACTTTGTGCTTAGGCTGGATGTAGGACTGTGATACA
GCATATCGATATTGCTGAAGAATCACTCCAAACATAAAAGCTGAGCACGC
TTTCTGGCTCGACCATCTTGACTCCGTATAACCTTTTGTCCACTACCTTC
TCATTTTCTGCCTAGACGCAAGAAGAATTGGATGTGACCAAGACTTTATT
GCGTGAGGAGGCTTCACAGCGCCGCTCCCTGCAGACGGAAGTTGAGGAGC
TCAAGGCCAAATATCGTCGGTGCATGGAGCTTGCTGCCGAGCTCATTTCT
ATCAAGGATACTGGCGTTACATCCCGCAGCGGCACCGGCAACAGCTCGAG
TATGCCACTTGCAACGGTCCCTACCCGAACAGCCTCTACGAGCACAAGCA
CTTCTCGATTCAACTCGTCATCTGTCCGCTTGTCCACGGAAAACGACGTC
CTTAAGAAACAGCTTAAATTGACACAGGTCTTGCTGGATGAGGAGCTGCG
CAAAAATCATTCTCTCCGTCAAAGTTTGGCACGTTTGAATGTTTAAAACC
TTTAAATGTAAGATGCCGCTTTACTGCCATGCACAGGACATTTGAGAGCA
GCAGCCCCGAATTTCGCCTATTCAATACTCGAGGAATTTTAATGTATAAG
ACAAAGTTTTGCGCGGCCGACAAACGCATGAGACGAGTGTAAATCGTGTC
GCATAACCAAATATATGATGCACACAAAAGAGAAAGAAAGATCAAGAGAT
CAACATACAAAACTTT
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Coding sequence (CDS) from alignment at CM002465.1:389835..391500-

>rna5196 ID=rna5196|Name=rna5196|organism=Nannochloropsis gaditana|type=CDS|length=2274bp|location=Sequence derived from alignment at CM002465.1:389835..391500- (Nannochloropsis gaditana)
ACGCAAGAAGAATTGGATGTGACCAAGACTTTATTGCGTGAGGAGGCTTC
ACAGCGCCGCTCCCTGCAGACGGAAGTTGAGGAGCTCAAGGCCAAATATC
GTCGGTGCATGGAGCTTGCTGCCGAGCTCATTTCTATCAAGGATACTGGC
GTTACATCCCGCAGCGGCACCGGCAACAGCTCGAGTATGCCACTTGCAAC
GGTCCCTACCCGAACAGCCTCTACGAGCACAAGCACTTCTCGATTCAACT
CGTCATCTGTCCGCTTGTCCACGGAAAACGACGTCCTTAAGAAACAGCTT
AAATTGACACAGGTCTTGCTGGATGAGGAGCTGCGCAAAAATCATTCTCT
CCGTCAAAGTTTGGCACGTTTGAATGTTTAAATGTCTATTTATGTTGTTC
TTGCCACCCTTCTTCCTCAGACAACTGTCCCGAAATCTAAATTAATTATG
GCCGCTACGGGTTCCGGGGTCCTTCGAGGAGAGGAACATAAAAATTCGCA
TGCCTATCAATATGACTTGAATGACAAACTCGCGGAAAACACGAGCTCAG
TCGATGAATTCGACGTGTTTTCCAAGACGGAATTGGATCTTGCGAAGGCC
AAACGCGTCTACCAGGCTTTGAAATCACGTTTGGATAAGGAACGAAACAC
TTTCCAAGATAAAACAAGTGCACTTGAGGACCGCGTATTTGAATTGGAAA
GTCGACTGCATCAATCGAAGATTGAGCGTCTGGCTAAAGAAGAGGAAGCG
CGTGTCCGACAAAGTACATTGGAAGCCGAGGGGAAACGAGAGCGAACCCG
CAATGGCCTGCTCGAGGAGGAATTGCGTGAGACTAAAGATATTTGGACGC
AACGACTCACAGAGGAACGCAAAACGTGGCAAAAAAAGCTTTCTGATAAG
GTAGCGTCGCTGCAATCACAGATCGAGGAGGCGAAGACGCTGCATGCTGA
AGAACTCAAGGAAACGAAAGACATTTGGGCCCAGCGCCTGAGCGGGGAGC
GTAAAGCATGGCAACAAAAGGTGTCTGAGAAAGTTGAGCTGCTCCAAGGC
CAAATCGATGACGCCCGCCATCACTACACCAGCCAGATCCAGACTCTGCA
AGAGGATTTACGGGATGCTTTGGCCGGGCGTTGCCAGACGCAAGAAGAAT
TGGATGTGACCAAGACTTTATTGCGTGAGGAGGCTTCACAGCGCCGCTCC
CTGCAGACGGAAGTTGAGGAGCTCAAGGCCAAATATCGTCGGTGCATGGA
GCTTGCTGCCGAGCTCATTTCTATCAAGGATACTGGCGTTACATCCCGCA
GCGGCACCGGCAACAGCTCGAGTATGCCACTTGCAACGGTCCCTACCCGA
ACAGCCTCTACGAGCACAAGCACTTCTCGATTCAACTCGTCATCTGTCCG
CTTGTCCACGGAAAACGACGTCCTTAAGAAACAGCTTAAATTGACACAGG
TCTTGCTGGATGAGGAGCTGCGCAAAAATCATTCTCTCCGTCAAAGTTTG
GCACGTTTGAATGTTTAAATGTCTATTTATGTTGTTCTTGCCACCCTTCT
TCCTCAGACAACTGTCCCGAAATCTAAATTAATTATGGCCGCTACGGGTT
CCGGGGTCCTTCGAGGAGAGGAACATAAAAATTCGCATGCCTATCAATAT
GACTTGAATGACAAACTCGCGGAAAACACGAGCTCAGTCGATGAATTCGA
CGTGTTTTCCAAGACGGAATTGGATCTTGCGAAGGCCAAACGCGTCTACC
AGGCTTTGAAATCACGTTTGGATAAGGAACGAAACACTTTCCAAGATAAA
ACAAGTGCACTTGAGGACCGCGTATTTGAATTGGAAAGTCGACTGCATCA
ATCGAAGATTGAGCGTCTGGCTAAAGAAGAGGAAGCGCGTGTCCGACAAA
GTACATTGGAAGCCGAGGGGAAACGAGAGCGAACCCGCAATGGCCTGCTC
GAGGAGGAATTGCGTGAGACTAAAGATATTTGGACGCAACGACTCACAGA
GGAACGCAAAACGTGGCAAAAAAAGCTTTCTGATAAGGTAGCGTCGCTGC
AATCACAGATCGAGGAGGCGAAGACGCTGCATGCTGAAGAACTCAAGGAA
ACGAAAGACATTTGGGCCCAGCGCCTGAGCGGGGAGCGTAAAGCATGGCA
ACAAAAGGTGTCTGAGAAAGTTGAGCTGCTCCAAGGCCAAATCGATGACG
CCCGCCATCACTACACCAGCCAGATCCAGACTCTGCAAGAGGATTTACGG
GATGCTTTGGCCGGGCGTTGCCAG
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Synonyms
Publications