rna5194, rna5194 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5194
Unique Name	rna5194
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1377
Alignment location	CM002465.1:386400..389159 -

Link to JBrowse

Properties


Property Name	Value
Product	PDZ domain protein
Orig transcript id	gnl\|cribi\|Naga_100236g1.4061.mrna
Orig protein id	gnl\|cribi\|Naga_100236g1.4061
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:386400..389159 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100236g1	gene5014	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25485.1	cds5182	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5194	rna5194-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:386400..389159-
coding sequence from alignment at CM002465.1:386400..389159-

mRNA sequence

>rna5194 ID=rna5194|Name=rna5194|organism=Nannochloropsis gaditana|type=mRNA|length=1377bp
AGGGAGGGGAAGACGAGGGGCGTGGGAGGGAAAGGGAGGGAATTTGGGGG
AAGAACGGCCGCCGAGCTTACGCTGGAGCGGACCATGGCCTTGGCGCAGC
CTGGGACAGAGACCAGAAGAGGGGAACAGAGGGGAGGAGAAGAGGGGAAC
AGAGGGGATGGGCCGGCTTCGGACAGTGGTGATTCCTCTCCCCCAGACCT
TTCTGACGCGTCACCTTCCGCTGCGTCGGTCTTAAGCACACGGGCGTTGG
CCCTTTTGGTCTCCTTTGGTGCCCGCGTGGACCTGAGCAGAAGCGACAAG
AATACCCGGAGCAGCAGCAAGAGCAGTCTGACCGATTTCCTCCTGCCCTC
CCAGGCCCCGAGGGGCGAGCAGCAGCGCCGGGAAGATCGACAGCAGCGAC
TGCAGTCAGCCAAGGCGGTGTGGAGCGCGAAAAAAGCGCCGTCGGCCAAA
GATCTCTCTGCGGAGGCCATGCAACGCATCGCTCAAAAAGCCTGGCACCG
GTGCCACGCAGGGTCTTTGGGCCTTGCGGGCGAGGGATATTTGGAAAGAG
AAAGGGAAGGACATGGGGGGGTGAAAGAGGTGGAGGCGTGTCTGTTGTGC
GAGGAGAGTTTCAATACCTTAGCTCGCCGGCAGCACCGGTGTCGTTTATG
CGCGCTACCTGTATGCGGGGATTGTTCGAGCAAGCGACTTCCTCTGGGTG
CCTATTTAGGGGGAGGAGGGAGGGAGGGAGGGAAAGGGGGAGGAGTCGAA
ACGATGGTTCGTGTCTGCGACGGTTGCTTCAATTGGGGCGTCTACGAGAT
GCTGAAGCTGCGTGTATCAGTGGGGGGGGAGCGTGTGCACGACAGAAAGG
AGGCCAAATTTGTGGAGGCGGGAGCCAGGGAACGGGCGGAAGAACGAGAA
CTATTCGGGCAAAGTCGAGAAAAATCGGGGGGCCGAGGTGGGTTGATGAA
CTGGCTCCGAAAAGAGGCTAATCCTGCGGGACAGGCGAGTCGGCGGGCGA
CACAAGGCGTGATGGCGGCGATGGGGGAGTTGCGACACGGGCTTCAGGAT
CGAGGGGAGCGACTCGAGAGCCTCGCGGATAAGACTACGGAACTGGCGGA
TAGCTCCGCCCAATTTGCGGAGATGGCCAAGCAGTTGAATGAGCGGTATG
GGGGTGGAGGAGGATGGTGGTGAGAGGGTGGGATAGGTGGCGAGAGTGGA
AGAAACGTCCTCAGGAAAAAGTTGAGTGGGATCTGCCGGCGCGTCGGTGG
CTGTAAATAAATTCAACGACGGAATGGTTTGTGGAATGTGAGAACTTCTT
TCGGGTGCACTCGTTATGTTGTGGAAGGGATCCTTCTCCATGCTATGATG
TCTTTTCACAAGTTGACTTTTGCTGGT

protein sequence of rna5194

>rna5194-protein ID=rna5194-protein|Name=rna5194|organism=Nannochloropsis gaditana|type=polypeptide|length=641bp
MALRLILTFLPFRQEHATDRWTMLSIHIVSSPQPLANSRACVISKMIDRL
SYAIWSIRTLTKASQNFPTVLSPTGRLGMAPPGPSPSTAHQRPVCVKMGD
LLHVTFLAAAGSPSPTSPEPSTLALCPPPAGPTPQPVCLTAASGAWLEDA
SAVCLHSVGTSLTRRDPDLNTLPERVKVGDVVTVSGAGGSNAWMLDGRSD
QLCWGDTEKGKDRRQAFVIAPPPSTESLPEYVGVNEEEGEREDAGGALRV
GDAFVLVPVGGEGLESRRLVARIPGYKDMLRSPASVLGSSSSPSHSHRGI
DPAAPPPPAASLSSPSSPPPPSRPVAERSPVYELCLRCGEKEGMDVGSEP
PPSYPLFVRIASRLPAGASLPPIPPADPGALGVALPHPPSPSANPRHGEE
QGSREGADSVVSVLFQQGDLGLSLARTPSGRARVLRLQPHTQADRNGIRA
GDVIIQLNEDWDLSKQVLDSESWAAMVQYIKTSPRPLRLTVARKRPTPSR
PSPPQPFLSDPSEGTDEQAGARTASPCATPSPRPPGAALCLPACPPGLRA
DPTSALPSPARSSRKLLFRGPLRLWQEGRLWGGSWEERDAYLFSDAFVLA
FPPSPPLLAAPSRLQLWRLTHPGPWPPASSGRRGGRRAGRR

mRNA from alignment at CM002465.1:386400..389159-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5194 ID=rna5194|Name=rna5194|organism=Nannochloropsis gaditana|type=mRNA|length=2760bp|location=Sequence derived from alignment at CM002465.1:386400..389159- (Nannochloropsis gaditana)
AGCGACAACTGAACTTAACGCAAGCGCGTTCGACTGATGACGGCCCATCG
AACGTTTTTATATCAGCTTCACTGGAATGTGTTGTGATGTGTCGCGCACA
CTTCATGGTTCTACCATTGAAGAGTATAATTGAAAATTGTAACGCATTAA
ATATTGTCTCACAAGTGTCGTAGAAACTTGCATTTTTTGATTTGTTACGG
AAGGGAAGCGTACTTCGACCACAGGCGTGATGGAAGACGAACCGAGTACA
TCTGTTGCTACTATTCATAAGAAACAAATCAATTGAGTGCTAGGTCACAC
CATGCATATGTAACGACTTGAGGCGTACAATATCCTTACTATGTGAGACC
ATCTTATTGCAGTTACCTGGTGTATGTATCCCTGTCTTTACGTCAGGCAT
CAGGTTCATGTTCTTCACTCCGCGTTCCCTCAGTGTTCTACGCAACTACT
CGTATGGAGACATTATCGACCCTTCACTCGCAACTCTAACAGACTTTATT
ACCTTTATATTACAAAAGAATTTACAGTCTAAATTTTGCTTGCACGCCAA
GTTCCAGGAAAATGGCATTGCGTCTCATTCTTACCTTTCTCCCCTTCAGA
CAAGAGCATGCAACAGACAGATGGACAATGCTTTCCATACATATTGTTTC
AAGCCCACAACCACTCGCAAATTCACGTGCCTGTGTTATTTCAAAGATGA
TCGACAGGCTTTCGTACGCAATTTGGTCTATTCGGACTCTAACAAAGGCT
TCACAAAACTTTCCTACGGTCCTCTCCCCTACAGGCAGACTGGGAATGGC
CCCGCCCGGTCCTTCCCCGTCAACGGCCCACCAACGGCCCGTATGTGTCA
AAATGGGAGATTTGCTTCACGTGACATTTCTTGCCGCAGCCGGTAGCCCC
TCACCCACGTCCCCAGAGCCGTCCACGCTTGCCTTGTGTCCACCTCCCGC
TGGGCCCACCCCTCAGCCCGTCTGCCTCACTGCCGCCTCGGGAGCATGGC
TCGAAGACGCCTCAGCTGTGTGCTTGCACAGCGTGGGAACGAGCCTCACC
AGACGCGACCCGGATCTCAACACATTGCCAGAGAGAGTGAAAGTCGGAGA
CGTGGTGACTGTGAGTGGGGCAGGGGGCTCGAACGCCTGGATGCTGGACG
GGCGCTCCGATCAGTTGTGCTGGGGCGACACGGAGAAAGGGAAGGACAGA
AGGCAAGCATTTGTCATCGCACCACCACCTTCGACCGAATCCTTGCCGGA
ATATGTGGGAGTAAATGAGGAAGAGGGAGAGCGGGAAGACGCTGGGGGCG
CGTTGCGCGTGGGCGACGCGTTCGTCCTTGTCCCCGTGGGGGGCGAGGGA
CTCGAGAGCCGGAGATTGGTGGCCCGCATACCCGGATACAAGGACATGCT
GAGAAGCCCTGCCTCCGTGCTAGGCTCGTCCTCCTCCCCCTCGCACAGCC
ATCGCGGCATAGATCCTGCGGCTCCTCCGCCCCCCGCCGCCTCCCTCTCC
TCGCCCTCCTCCCCCCCTCCCCCCTCCCGGCCCGTGGCCGAGCGTTCTCC
TGTCTATGAGCTCTGCCTTCGTTGCGGGGAAAAGGAAGGGATGGACGTGG
GCTCTGAGCCACCCCCCTCGTACCCCTTGTTTGTGAGGATCGCCTCTCGC
CTTCCAGCCGGCGCCTCCCTGCCGCCCATTCCCCCCGCGGACCCGGGAGC
CCTCGGAGTCGCCCTCCCCCACCCTCCCTCCCCCTCTGCAAACCCCAGGC
ACGGGGAAGAGCAGGGCTCCAGGGAGGGAGCGGACAGCGTGGTCTCGGTC
CTCTTCCAGCAAGGGGACTTGGGCCTGTCTCTCGCACGCACCCCCTCGGG
GCGGGCGCGCGTCCTCCGGCTGCAGCCCCACACCCAGGCGGATCGGAACG
GCATCCGCGCTGGAGATGTCATCATCCAGCTCAACGAGGACTGGGATCTG
AGCAAGCAGGTGCTGGATAGCGAGAGCTGGGCCGCCATGGTGCAGTACAT
CAAGACGAGCCCGCGGCCGTTACGGCTAACGGTCGCAAGAAAAAGGCCGA
CGCCCTCGCGCCCATCGCCTCCACAACCATTTCTCTCAGATCCGTCCGAG
GGAACAGACGAGCAGGCGGGGGCTCGGACTGCTTCTCCTTGTGCGACTCC
CTCGCCCCGACCCCCGGGCGCGGCCCTTTGCCTGCCGGCCTGCCCCCCGG
GCCTGCGTGCAGACCCAACCTCTGCCCTCCCGTCCCCCGCAAGGTCATCC
CGGAAATTGCTTTTTCGAGGGCCTTTGAGGCTCTGGCAGGAAGGTCGGCT
TTGGGGGGGGTCGTGGGAGGAAAGGGACGCGTACCTTTTCTCCGATGCCT
TCGTCCTCGCTTTTCCTCCCTCCCCCCCCCTTCTGGCGGCCCCCTCAAGG
CTCCAGCTATGGAGATTGACGCATCCTGGGCCTTGGCCACCTGCAAGCTC
AGGGAGGAGGGGGGGAAGGAGGGCGGGGAGAAGGTAGGGGTCGGGAGACG
GGACGGGGGCTGCTTCGAGCTGGTCACGCCGCTGCGGATGTACGTCCTCG
CAGCTCCTTCCCCCTCGGAACGGGAGGGCTGGCTCGCCGCCATCTATGCT
GGCATGGTCGCCTTGGCGCGGATGGGGATGGTCGGAGGTGGGGAGGGAGG
GCAGGCGGACGTGGGGATGCGGCATCAGCTAATTTTAGACTCCTTGCATG
CGGCGGTGGTGTATGGGAAAATGGATCGGGTGCGTGCCCTTGTGGGGCGA
AGGGAGGAAG

Coding sequence (CDS) from alignment at CM002465.1:386400..389159-

>rna5194 ID=rna5194|Name=rna5194|organism=Nannochloropsis gaditana|type=CDS|length=1926bp|location=Sequence derived from alignment at CM002465.1:386400..389159- (Nannochloropsis gaditana)
ATGGCATTGCGTCTCATTCTTACCTTTCTCCCCTTCAGACAAGAGCATGC
AACAGACAGATGGACAATGCTTTCCATACATATTGTTTCAAGCCCACAAC
CACTCGCAAATTCACGTGCCTGTGTTATTTCAAAGATGATCGACAGGCTT
TCGTACGCAATTTGGTCTATTCGGACTCTAACAAAGGCTTCACAAAACTT
TCCTACGGTCCTCTCCCCTACAGGCAGACTGGGAATGGCCCCGCCCGGTC
CTTCCCCGTCAACGGCCCACCAACGGCCCGTATGTGTCAAAATGGGAGAT
TTGCTTCACGTGACATTTCTTGCCGCAGCCGGTAGCCCCTCACCCACGTC
CCCAGAGCCGTCCACGCTTGCCTTGTGTCCACCTCCCGCTGGGCCCACCC
CTCAGCCCGTCTGCCTCACTGCCGCCTCGGGAGCATGGCTCGAAGACGCC
TCAGCTGTGTGCTTGCACAGCGTGGGAACGAGCCTCACCAGACGCGACCC
GGATCTCAACACATTGCCAGAGAGAGTGAAAGTCGGAGACGTGGTGACTG
TGAGTGGGGCAGGGGGCTCGAACGCCTGGATGCTGGACGGGCGCTCCGAT
CAGTTGTGCTGGGGCGACACGGAGAAAGGGAAGGACAGAAGGCAAGCATT
TGTCATCGCACCACCACCTTCGACCGAATCCTTGCCGGAATATGTGGGAG
TAAATGAGGAAGAGGGAGAGCGGGAAGACGCTGGGGGCGCGTTGCGCGTG
GGCGACGCGTTCGTCCTTGTCCCCGTGGGGGGCGAGGGACTCGAGAGCCG
GAGATTGGTGGCCCGCATACCCGGATACAAGGACATGCTGAGAAGCCCTG
CCTCCGTGCTAGGCTCGTCCTCCTCCCCCTCGCACAGCCATCGCGGCATA
GATCCTGCGGCTCCTCCGCCCCCCGCCGCCTCCCTCTCCTCGCCCTCCTC
CCCCCCTCCCCCCTCCCGGCCCGTGGCCGAGCGTTCTCCTGTCTATGAGC
TCTGCCTTCGTTGCGGGGAAAAGGAAGGGATGGACGTGGGCTCTGAGCCA
CCCCCCTCGTACCCCTTGTTTGTGAGGATCGCCTCTCGCCTTCCAGCCGG
CGCCTCCCTGCCGCCCATTCCCCCCGCGGACCCGGGAGCCCTCGGAGTCG
CCCTCCCCCACCCTCCCTCCCCCTCTGCAAACCCCAGGCACGGGGAAGAG
CAGGGCTCCAGGGAGGGAGCGGACAGCGTGGTCTCGGTCCTCTTCCAGCA
AGGGGACTTGGGCCTGTCTCTCGCACGCACCCCCTCGGGGCGGGCGCGCG
TCCTCCGGCTGCAGCCCCACACCCAGGCGGATCGGAACGGCATCCGCGCT
GGAGATGTCATCATCCAGCTCAACGAGGACTGGGATCTGAGCAAGCAGGT
GCTGGATAGCGAGAGCTGGGCCGCCATGGTGCAGTACATCAAGACGAGCC
CGCGGCCGTTACGGCTAACGGTCGCAAGAAAAAGGCCGACGCCCTCGCGC
CCATCGCCTCCACAACCATTTCTCTCAGATCCGTCCGAGGGAACAGACGA
GCAGGCGGGGGCTCGGACTGCTTCTCCTTGTGCGACTCCCTCGCCCCGAC
CCCCGGGCGCGGCCCTTTGCCTGCCGGCCTGCCCCCCGGGCCTGCGTGCA
GACCCAACCTCTGCCCTCCCGTCCCCCGCAAGGTCATCCCGGAAATTGCT
TTTTCGAGGGCCTTTGAGGCTCTGGCAGGAAGGTCGGCTTTGGGGGGGGT
CGTGGGAGGAAAGGGACGCGTACCTTTTCTCCGATGCCTTCGTCCTCGCT
TTTCCTCCCTCCCCCCCCCTTCTGGCGGCCCCCTCAAGGCTCCAGCTATG
GAGATTGACGCATCCTGGGCCTTGGCCACCTGCAAGCTCAGGGAGGAGGG
GGGGAAGGAGGGCGGGGAGAAGGTAG

Synonyms

Publications