EWM25485.1, cds5182 (CDS) Nannochloropsis gaditana

Overview
NameEWM25485.1
Unique Namecds5182
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:386673..388598 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25485.1
ProductPDZ domain protein
Orig transcript idgnl|cribi|Naga_100236g1.4061.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:386673..388598 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
Homology
[Close]
BLAST of EWM25485.1 vs. NCBI_GenBank
Match: gi|585107250|gb|EWM25485.1| (PDZ domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1258.82 bits (3256), Expect = 0.000e+0
Identity = 641/641 (100.00%), Postives = 641/641 (100.00%), Query Frame = 0 
Query:    1 MALRLILTFLPFRQEHATDRWTMLSIHIVSSPQPLANSRACVISKMIDRLSYAIWSIRTLTKASQNFPTVLSPTGRLGMAPPGPSPSTAHQRPVCVKMGDLLHVTFLAAAGSPSPTSPEPSTLALCPPPAGPTPQPVCLTAASGAWLEDASAVCLHSVGTSLTRRDPDLNTLPERVKVGDVVTVSGAGGSNAWMLDGRSDQLCWGDTEKGKDRRQAFVIAPPPSTESLPEYVGVNEEEGEREDAGGALRVGDAFVLVPVGGEGLESRRLVARIPGYKDMLRSPASVLGSSSSPSHSHRGIDPAAPPPPAASLSSPSSPPPPSRPVAERSPVYELCLRCGEKEGMDVGSEPPPSYPLFVRIASRLPAGASLPPIPPADPGALGVALPHPPSPSANPRHGEEQGSREGADSVVSVLFQQGDLGLSLARTPSGRARVLRLQPHTQADRNGIRAGDVIIQLNEDWDLSKQVLDSESWAAMVQYIKTSPRPLRLTVARKRPTPSRPSPPQPFLSDPSEGTDEQAGARTASPCATPSPRPPGAALCLPACPPGLRADPTSALPSPARSSRKLLFRGPLRLWQEGRLWGGSWEERDAYLFSDAFVLAFPPSPPLLAAPSRLQLWRLTHPGPWPPASSGRRGGRRAGRR 641
            MALRLILTFLPFRQEHATDRWTMLSIHIVSSPQPLANSRACVISKMIDRLSYAIWSIRTLTKASQNFPTVLSPTGRLGMAPPGPSPSTAHQRPVCVKMGDLLHVTFLAAAGSPSPTSPEPSTLALCPPPAGPTPQPVCLTAASGAWLEDASAVCLHSVGTSLTRRDPDLNTLPERVKVGDVVTVSGAGGSNAWMLDGRSDQLCWGDTEKGKDRRQAFVIAPPPSTESLPEYVGVNEEEGEREDAGGALRVGDAFVLVPVGGEGLESRRLVARIPGYKDMLRSPASVLGSSSSPSHSHRGIDPAAPPPPAASLSSPSSPPPPSRPVAERSPVYELCLRCGEKEGMDVGSEPPPSYPLFVRIASRLPAGASLPPIPPADPGALGVALPHPPSPSANPRHGEEQGSREGADSVVSVLFQQGDLGLSLARTPSGRARVLRLQPHTQADRNGIRAGDVIIQLNEDWDLSKQVLDSESWAAMVQYIKTSPRPLRLTVARKRPTPSRPSPPQPFLSDPSEGTDEQAGARTASPCATPSPRPPGAALCLPACPPGLRADPTSALPSPARSSRKLLFRGPLRLWQEGRLWGGSWEERDAYLFSDAFVLAFPPSPPLLAAPSRLQLWRLTHPGPWPPASSGRRGGRRAGRR
Sbjct:    1 MALRLILTFLPFRQEHATDRWTMLSIHIVSSPQPLANSRACVISKMIDRLSYAIWSIRTLTKASQNFPTVLSPTGRLGMAPPGPSPSTAHQRPVCVKMGDLLHVTFLAAAGSPSPTSPEPSTLALCPPPAGPTPQPVCLTAASGAWLEDASAVCLHSVGTSLTRRDPDLNTLPERVKVGDVVTVSGAGGSNAWMLDGRSDQLCWGDTEKGKDRRQAFVIAPPPSTESLPEYVGVNEEEGEREDAGGALRVGDAFVLVPVGGEGLESRRLVARIPGYKDMLRSPASVLGSSSSPSHSHRGIDPAAPPPPAASLSSPSSPPPPSRPVAERSPVYELCLRCGEKEGMDVGSEPPPSYPLFVRIASRLPAGASLPPIPPADPGALGVALPHPPSPSANPRHGEEQGSREGADSVVSVLFQQGDLGLSLARTPSGRARVLRLQPHTQADRNGIRAGDVIIQLNEDWDLSKQVLDSESWAAMVQYIKTSPRPLRLTVARKRPTPSRPSPPQPFLSDPSEGTDEQAGARTASPCATPSPRPPGAALCLPACPPGLRADPTSALPSPARSSRKLLFRGPLRLWQEGRLWGGSWEERDAYLFSDAFVLAFPPSPPLLAAPSRLQLWRLTHPGPWPPASSGRRGGRRAGRR 641
The following BLAST results are available for this feature:
BLAST of EWM25485.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585107250|gb|EWM25485.1|0.000e+0100.00PDZ domain protein [Nannochloropsis gaditana][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5194rna5194Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications