|
|
Properties
| Property Name | Value |
|---|
| Product | zinc finger FYVE-type |
| Orig transcript id | gnl|cribi|Naga_100032g49.235.mrna |
| Orig protein id | gnl|cribi|Naga_100032g49.235 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:383907..385283 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5193 ID=rna5193|Name=rna5193|organism=Nannochloropsis gaditana|type=mRNA|length=1494bp
GAAACACCAAGTCATGGTCAGTCTTCCGGGTGACGGGAGGTTTTTCAGCG
ACATCCACACGCCTAGAATGACACCAATAAGAAAAAACTGCGCGACACTG
CGTACCTGCGCGCGTTGATGAGGCATGAGAAAATGGTCATGATATGTACA
AGATGAGGTATTGATGAACTCATTTCCCCCGAATTTCAGATTTAAGACAT
AGAATATACCTGCTGGTGGGCAAGAATAGGGTGTGTGGTCCGTGCGGCTT
TGGGAGGTGCTGACCTGCAACCGTCGAAAACCTGCATCTGAGTCTTAAGA
GATTCGACTACACGGCAGCAATATTTAAGCATGAAGTACACAAACAAATT
GTTCTTTTTGTCTGCGCGCGGGGATTGGTTCAAGAGGACTTGCGGGACCA
CACGACTGCCGAGTCGTCTCCTAACTGCTCCAAGCAACTGTAACACCACC
AGGAAAATTGTCAAATCTACCGAGGCCACTTCATCACCATTCCTCTCACC
CTGGGCTATCTATAGCCGCTGGTTGAAAGACCATCCAGTGAAAACAAAGC
TCCTCACCTCCTCTTTCATCATGGGCGCGGGCGACGTGGCGTGCCAGTTT
CTCACCCGATATGAAAAGCAGCAAGAACGTGCTACAGACCTCCCGAATGT
GGCACGTTCGTCTCCCACTCCCACTCTTCCTTACGACTGGTACCGCACCG
CTAAATTTTTCCTGCTGGGAGGTGTCCTTGTCGGGCCCGCTCTGCACCAC
TGGTATTCGTTCCTTATTCGGCTAGCCCCTGTTCAAAATACTTCTGGCGC
TCTCAAGCGTTTGGCTGTCGATCAGTGCATATTTGCCCCCGCTTTCATCC
CTGTCTTCTTCTCAGGTCTACAATTCTTGGATGGAAATTTCGACATGGAC
CAGCTCCGGCGTAAGTTGAAGAGAGACTACAAGGAGACCCTGATCGCAAA
TTGGGCGGTGTGGATACCGGCCATGATGGTCAACTTCCGCTTTGTCCCTC
AGCACTACCAGGTCTTGTACAGCAATGCCGTCGGATTTTGTTGGAATATT
TTTTTGAGTGCAATCAGCCATAAGTAAGTAAGACTGGAAAATGCATCGCA
CGAAGACATCCTTAGATGCTTTACTCTATTAATGCATGTGGTATCTGGGG
AGGACTGAAAATGTCTATGAAATGCAAGATTTGATGCATGTAAATAAAGC
AGGAGATAACAATGTACAGGCCTTGGGACTCAGTAAGAAGAAAATGCAGA
AAGACATAATGTGCATATGGAAGGGTTTAGAGTTAGGAAGAAAGTGTTGA
TAGAGCGGGGGAAAGCTTCATCTCTTACTAGAGTTGCCGTTGCTCTAGTG
AAGAGGCTGTAATAAGACGTACAATGTCTGAGCAATAGTAAAATCTACCA
GCAAAAGTCAACTTGTGAAAAGACATCATAGCATGGAGAAGGATCCCTTC
CACAACATAACGAGTGCACCCGAAAGAAGTTCTCACATTCCACA back to topprotein sequence of rna5193 >rna5193-protein ID=rna5193-protein|Name=rna5193|organism=Nannochloropsis gaditana|type=polypeptide|length=390bp
REGKTRGVGGKGREFGGRTAAELTLERTMALAQPGTETRRGEQRGGEEGN
RGDGPASDSGDSSPPDLSDASPSAASVLSTRALALLVSFGARVDLSRSDK
NTRSSSKSSLTDFLLPSQAPRGEQQRREDRQQRLQSAKAVWSAKKAPSAK
DLSAEAMQRIAQKAWHRCHAGSLGLAGEGYLEREREGHGGVKEVEACLLC
EESFNTLARRQHRCRLCALPVCGDCSSKRLPLGAYLGGGGREGGKGGGVE
TMVRVCDGCFNWGVYEMLKLRVSVGGERVHDRKEAKFVEAGARERAEERE
LFGQSREKSGGRGGLMNWLRKEANPAGQASRRATQGVMAAMGELRHGLQD
RGERLESLADKTTELADSSAQFAEMAKQLNERYGGGGGWW back to topmRNA from alignment at CM002465.1:383907..385283- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna5193 ID=rna5193|Name=rna5193|organism=Nannochloropsis gaditana|type=mRNA|length=1377bp|location=Sequence derived from alignment at CM002465.1:383907..385283- (Nannochloropsis gaditana)
AGGGAGGGGAAGACGAGGGGCGTGGGAGGGAAAGGGAGGGAATTTGGGGG
AAGAACGGCCGCCGAGCTTACGCTGGAGCGGACCATGGCCTTGGCGCAGC
CTGGGACAGAGACCAGAAGAGGGGAACAGAGGGGAGGAGAAGAGGGGAAC
AGAGGGGATGGGCCGGCTTCGGACAGTGGTGATTCCTCTCCCCCAGACCT
TTCTGACGCGTCACCTTCCGCTGCGTCGGTCTTAAGCACACGGGCGTTGG
CCCTTTTGGTCTCCTTTGGTGCCCGCGTGGACCTGAGCAGAAGCGACAAG
AATACCCGGAGCAGCAGCAAGAGCAGTCTGACCGATTTCCTCCTGCCCTC
CCAGGCCCCGAGGGGCGAGCAGCAGCGCCGGGAAGATCGACAGCAGCGAC
TGCAGTCAGCCAAGGCGGTGTGGAGCGCGAAAAAAGCGCCGTCGGCCAAA
GATCTCTCTGCGGAGGCCATGCAACGCATCGCTCAAAAAGCCTGGCACCG
GTGCCACGCAGGGTCTTTGGGCCTTGCGGGCGAGGGATATTTGGAAAGAG
AAAGGGAAGGACATGGGGGGGTGAAAGAGGTGGAGGCGTGTCTGTTGTGC
GAGGAGAGTTTCAATACCTTAGCTCGCCGGCAGCACCGGTGTCGTTTATG
CGCGCTACCTGTATGCGGGGATTGTTCGAGCAAGCGACTTCCTCTGGGTG
CCTATTTAGGGGGAGGAGGGAGGGAGGGAGGGAAAGGGGGAGGAGTCGAA
ACGATGGTTCGTGTCTGCGACGGTTGCTTCAATTGGGGCGTCTACGAGAT
GCTGAAGCTGCGTGTATCAGTGGGGGGGGAGCGTGTGCACGACAGAAAGG
AGGCCAAATTTGTGGAGGCGGGAGCCAGGGAACGGGCGGAAGAACGAGAA
CTATTCGGGCAAAGTCGAGAAAAATCGGGGGGCCGAGGTGGGTTGATGAA
CTGGCTCCGAAAAGAGGCTAATCCTGCGGGACAGGCGAGTCGGCGGGCGA
CACAAGGCGTGATGGCGGCGATGGGGGAGTTGCGACACGGGCTTCAGGAT
CGAGGGGAGCGACTCGAGAGCCTCGCGGATAAGACTACGGAACTGGCGGA
TAGCTCCGCCCAATTTGCGGAGATGGCCAAGCAGTTGAATGAGCGGTATG
GGGGTGGAGGAGGATGGTGGTGAGAGGGTGGGATAGGTGGCGAGAGTGGA
AGAAACGTCCTCAGGAAAAAGTTGAGTGGGATCTGCCGGCGCGTCGGTGG
CTGTAAATAAATTCAACGACGGAATGGTTTGTGGAATGTGAGAACTTCTT
TCGGGTGCACTCGTTATGTTGTGGAAGGGATCCTTCTCCATGCTATGATG
TCTTTTCACAAGTTGACTTTTGCTGGT back to topCoding sequence (CDS) from alignment at CM002465.1:383907..385283- >rna5193 ID=rna5193|Name=rna5193|organism=Nannochloropsis gaditana|type=CDS|length=1173bp|location=Sequence derived from alignment at CM002465.1:383907..385283- (Nannochloropsis gaditana)
AGGGAGGGGAAGACGAGGGGCGTGGGAGGGAAAGGGAGGGAATTTGGGGG
AAGAACGGCCGCCGAGCTTACGCTGGAGCGGACCATGGCCTTGGCGCAGC
CTGGGACAGAGACCAGAAGAGGGGAACAGAGGGGAGGAGAAGAGGGGAAC
AGAGGGGATGGGCCGGCTTCGGACAGTGGTGATTCCTCTCCCCCAGACCT
TTCTGACGCGTCACCTTCCGCTGCGTCGGTCTTAAGCACACGGGCGTTGG
CCCTTTTGGTCTCCTTTGGTGCCCGCGTGGACCTGAGCAGAAGCGACAAG
AATACCCGGAGCAGCAGCAAGAGCAGTCTGACCGATTTCCTCCTGCCCTC
CCAGGCCCCGAGGGGCGAGCAGCAGCGCCGGGAAGATCGACAGCAGCGAC
TGCAGTCAGCCAAGGCGGTGTGGAGCGCGAAAAAAGCGCCGTCGGCCAAA
GATCTCTCTGCGGAGGCCATGCAACGCATCGCTCAAAAAGCCTGGCACCG
GTGCCACGCAGGGTCTTTGGGCCTTGCGGGCGAGGGATATTTGGAAAGAG
AAAGGGAAGGACATGGGGGGGTGAAAGAGGTGGAGGCGTGTCTGTTGTGC
GAGGAGAGTTTCAATACCTTAGCTCGCCGGCAGCACCGGTGTCGTTTATG
CGCGCTACCTGTATGCGGGGATTGTTCGAGCAAGCGACTTCCTCTGGGTG
CCTATTTAGGGGGAGGAGGGAGGGAGGGAGGGAAAGGGGGAGGAGTCGAA
ACGATGGTTCGTGTCTGCGACGGTTGCTTCAATTGGGGCGTCTACGAGAT
GCTGAAGCTGCGTGTATCAGTGGGGGGGGAGCGTGTGCACGACAGAAAGG
AGGCCAAATTTGTGGAGGCGGGAGCCAGGGAACGGGCGGAAGAACGAGAA
CTATTCGGGCAAAGTCGAGAAAAATCGGGGGGCCGAGGTGGGTTGATGAA
CTGGCTCCGAAAAGAGGCTAATCCTGCGGGACAGGCGAGTCGGCGGGCGA
CACAAGGCGTGATGGCGGCGATGGGGGAGTTGCGACACGGGCTTCAGGAT
CGAGGGGAGCGACTCGAGAGCCTCGCGGATAAGACTACGGAACTGGCGGA
TAGCTCCGCCCAATTTGCGGAGATGGCCAAGCAGTTGAATGAGCGGTATG
GGGGTGGAGGAGGATGGTGGTGA back to top
|