EWM25492.1, cds5181 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25492.1 vs. NCBI_GenBank
Match: gi|585107258|gb|EWM25492.1| (zinc finger FYVE-type, partial [Nannochloropsis gaditana]) HSP 1 Score: 776.933 bits (2005), Expect = 0.000e+0 Identity = 390/390 (100.00%), Postives = 390/390 (100.00%), Query Frame = 0
Query: 1 REGKTRGVGGKGREFGGRTAAELTLERTMALAQPGTETRRGEQRGGEEGNRGDGPASDSGDSSPPDLSDASPSAASVLSTRALALLVSFGARVDLSRSDKNTRSSSKSSLTDFLLPSQAPRGEQQRREDRQQRLQSAKAVWSAKKAPSAKDLSAEAMQRIAQKAWHRCHAGSLGLAGEGYLEREREGHGGVKEVEACLLCEESFNTLARRQHRCRLCALPVCGDCSSKRLPLGAYLGGGGREGGKGGGVETMVRVCDGCFNWGVYEMLKLRVSVGGERVHDRKEAKFVEAGARERAEERELFGQSREKSGGRGGLMNWLRKEANPAGQASRRATQGVMAAMGELRHGLQDRGERLESLADKTTELADSSAQFAEMAKQLNERYGGGGGWW 390
REGKTRGVGGKGREFGGRTAAELTLERTMALAQPGTETRRGEQRGGEEGNRGDGPASDSGDSSPPDLSDASPSAASVLSTRALALLVSFGARVDLSRSDKNTRSSSKSSLTDFLLPSQAPRGEQQRREDRQQRLQSAKAVWSAKKAPSAKDLSAEAMQRIAQKAWHRCHAGSLGLAGEGYLEREREGHGGVKEVEACLLCEESFNTLARRQHRCRLCALPVCGDCSSKRLPLGAYLGGGGREGGKGGGVETMVRVCDGCFNWGVYEMLKLRVSVGGERVHDRKEAKFVEAGARERAEERELFGQSREKSGGRGGLMNWLRKEANPAGQASRRATQGVMAAMGELRHGLQDRGERLESLADKTTELADSSAQFAEMAKQLNERYGGGGGWW
Sbjct: 1 REGKTRGVGGKGREFGGRTAAELTLERTMALAQPGTETRRGEQRGGEEGNRGDGPASDSGDSSPPDLSDASPSAASVLSTRALALLVSFGARVDLSRSDKNTRSSSKSSLTDFLLPSQAPRGEQQRREDRQQRLQSAKAVWSAKKAPSAKDLSAEAMQRIAQKAWHRCHAGSLGLAGEGYLEREREGHGGVKEVEACLLCEESFNTLARRQHRCRLCALPVCGDCSSKRLPLGAYLGGGGREGGKGGGVETMVRVCDGCFNWGVYEMLKLRVSVGGERVHDRKEAKFVEAGARERAEERELFGQSREKSGGRGGLMNWLRKEANPAGQASRRATQGVMAAMGELRHGLQDRGERLESLADKTTELADSSAQFAEMAKQLNERYGGGGGWW 390
BLAST of EWM25492.1 vs. NCBI_GenBank
Match: gi|224004982|ref|XP_002296142.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|209586174|gb|ACI64859.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 79.7221 bits (195), Expect = 2.688e-12 Identity = 61/227 (26.87%), Postives = 99/227 (43.61%), Query Frame = 0
Query: 155 EAMQRIAQKAWHRCHAGSLGLAGEGYLEREREGHGGVKEVEACLLCEESFNTLARRQHRCRLCALPVCGDCSSKRLPLGAYLGGGGREGGKGGGVETMVRVCDGCFNWGVYEMLKLRVSVGGERVHDRKEAKFVEAGARERAEERELFGQSREKSGGRGGLMNWLRKEANPAGQA-SRRATQGVMAAMGELRHGLQDRGERLESLADKTTELADSSAQFAEMAKQLN 380
+A Q++ A GSL + + + GG + +C LC F ++ R+ C++ VC DCS+KRL + GK RV DG FN G +E K +H ++ + G A RE G + WLR E++ + + G ++++ R+ + +RG++L+ LADK+ L +S FA MAK+LN
Sbjct: 1615 KASQKVYSSAPKVNVVGSLRILKNISSVVDSDSPGG-SDANSCALCWSEFGVISNRKQFCQVSYRYVCNDCSTKRL----------VDDGKD------YRVSDGQFNAGRFEETKAIAIASATNIHSKQTGASQKKGRSRVAHARETLG------------LTWLRGESSEKTEPNTNEKVSGAISSISHTRNAVLERGDKLQGLADKSEALNQASLDFANMAKELN 1812
BLAST of EWM25492.1 vs. NCBI_GenBank
Match: gi|1210522784|dbj|GAX18480.1| (hypothetical protein FisN_2Lh137 [Fistulifera solaris]) HSP 1 Score: 79.7221 bits (195), Expect = 2.694e-12 Identity = 66/212 (31.13%), Postives = 100/212 (47.17%), Query Frame = 0
Query: 187 GHGGVKEVEACLLCEESFNTLARRQHRCRLCALPVCGDCSSKRLPLGAYLGGGGREGGKGGGVETMVRVCDGCFNWGVYEMLKLRVSVGGERVHDRKEAK-----FVEAGARERAEERE----LFGQSREKSGGRGGLMNWLRKEANPAGQASRRATQGVMAAMGELRHGLQDRGERLESLADKTTELADSSAQFAEMAKQLNERYGGGGGW 389
G G + ++C +C +SF T+ RQHRCR+ VC DCS+KR+ K E RV DG F +G ++ L V ++ A F G R E+ + LFG E++ LM E +G A G+ + E R L +RG +++SLA+K+ ++ ++SA FA+MAKQL ++ GG W
Sbjct: 1265 GQPGGSDEKSCAICWKSFGTIRNRQHRCRISRRYVCDDCSTKRV--------------KDEFTEH--RVSDGQFLFGRFDALNAGQICNAPEVLNKVSATRVPSSFANKGNRTVQEDLQNRDSLFGGIIEEASN---LMFGDGDEKVSSGVA------GITGTLNETRDALNERGGKIDSLAEKSEKMVEASANFADMAKQLRKQTEGGFFW 1451
BLAST of EWM25492.1 vs. NCBI_GenBank
Match: gi|1210512903|dbj|GAX28045.1| (hypothetical protein FisN_2Hh137 [Fistulifera solaris]) HSP 1 Score: 73.9442 bits (180), Expect = 1.871e-10 Identity = 57/227 (25.11%), Postives = 102/227 (44.93%), Query Frame = 0
Query: 168 CHAGSLGL-AGEGYLEREREGHGGVKEVEACLLCEESFNTLARRQHRCRLCALPVCGDCSSKRLPLGAYLGGGGREGGKGGGVETMVRVCDGCFNWGVYEMLKLRVSVGGERVHDRKEAKFVEAGARERAEERELFGQSREKSGGRGGLM----NWLRKEANPAGQASRRATQGVMAAMGELRHGLQDRGERLESLADKTTELADSSAQFAEMAKQLNERYGGGGGW 389
C A L + + L G G + ++C +C + F T+ RQHRCR+ VC +CS+KR+ T RV DG + ++ L + + +V ++ A + +E R + GG++ N + + + + G+ + + E R L +RG++L+SLA+K+ ++ ++SA FA+MAKQL ++ G W
Sbjct: 1215 CRATPFALISSDNKLAIPNSGQPGGSDEKSCAICWKPFGTIRNRQHRCRISRRYVCDECSTKRV----------------TDESTEHRVSDGQYLLARFDALNSQQTRDSPQVLNKASETRPATKANQTVQE-----DLRNRDSLFGGIIEQASNLMFGDGD---EKVNSGVPGIASTLNETRDALNERGQKLDSLAEKSEKMVEASANFADMAKQLRKQSEGSFFW 1417 The following BLAST results are available for this feature:
BLAST of EWM25492.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|