EWM25492.1, cds5181 (CDS) Nannochloropsis gaditana

Overview
NameEWM25492.1
Unique Namecds5181
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:384111..385283 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25492.1
Productzinc finger FYVE-type
Partialtrue
Orig transcript idgnl|cribi|Naga_100032g49.235.mrna
GbkeyCDS
End range.
End range385283
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:384111..385283 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0016192vesicle-mediated transport
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0046872metal ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR017455Znf_FYVE-rel
IPR001388Synaptobrevin
IPR013083Znf_RING/FYVE/PHD
IPR000306Znf_FYVE
Homology
BLAST of EWM25492.1 vs. NCBI_GenBank
Match: gi|585107258|gb|EWM25492.1| (zinc finger FYVE-type, partial [Nannochloropsis gaditana])

HSP 1 Score: 776.933 bits (2005), Expect = 0.000e+0
Identity = 390/390 (100.00%), Postives = 390/390 (100.00%), Query Frame = 0
Query:    1 REGKTRGVGGKGREFGGRTAAELTLERTMALAQPGTETRRGEQRGGEEGNRGDGPASDSGDSSPPDLSDASPSAASVLSTRALALLVSFGARVDLSRSDKNTRSSSKSSLTDFLLPSQAPRGEQQRREDRQQRLQSAKAVWSAKKAPSAKDLSAEAMQRIAQKAWHRCHAGSLGLAGEGYLEREREGHGGVKEVEACLLCEESFNTLARRQHRCRLCALPVCGDCSSKRLPLGAYLGGGGREGGKGGGVETMVRVCDGCFNWGVYEMLKLRVSVGGERVHDRKEAKFVEAGARERAEERELFGQSREKSGGRGGLMNWLRKEANPAGQASRRATQGVMAAMGELRHGLQDRGERLESLADKTTELADSSAQFAEMAKQLNERYGGGGGWW 390
            REGKTRGVGGKGREFGGRTAAELTLERTMALAQPGTETRRGEQRGGEEGNRGDGPASDSGDSSPPDLSDASPSAASVLSTRALALLVSFGARVDLSRSDKNTRSSSKSSLTDFLLPSQAPRGEQQRREDRQQRLQSAKAVWSAKKAPSAKDLSAEAMQRIAQKAWHRCHAGSLGLAGEGYLEREREGHGGVKEVEACLLCEESFNTLARRQHRCRLCALPVCGDCSSKRLPLGAYLGGGGREGGKGGGVETMVRVCDGCFNWGVYEMLKLRVSVGGERVHDRKEAKFVEAGARERAEERELFGQSREKSGGRGGLMNWLRKEANPAGQASRRATQGVMAAMGELRHGLQDRGERLESLADKTTELADSSAQFAEMAKQLNERYGGGGGWW
Sbjct:    1 REGKTRGVGGKGREFGGRTAAELTLERTMALAQPGTETRRGEQRGGEEGNRGDGPASDSGDSSPPDLSDASPSAASVLSTRALALLVSFGARVDLSRSDKNTRSSSKSSLTDFLLPSQAPRGEQQRREDRQQRLQSAKAVWSAKKAPSAKDLSAEAMQRIAQKAWHRCHAGSLGLAGEGYLEREREGHGGVKEVEACLLCEESFNTLARRQHRCRLCALPVCGDCSSKRLPLGAYLGGGGREGGKGGGVETMVRVCDGCFNWGVYEMLKLRVSVGGERVHDRKEAKFVEAGARERAEERELFGQSREKSGGRGGLMNWLRKEANPAGQASRRATQGVMAAMGELRHGLQDRGERLESLADKTTELADSSAQFAEMAKQLNERYGGGGGWW 390          
BLAST of EWM25492.1 vs. NCBI_GenBank
Match: gi|224004982|ref|XP_002296142.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|209586174|gb|ACI64859.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 79.7221 bits (195), Expect = 2.688e-12
Identity = 61/227 (26.87%), Postives = 99/227 (43.61%), Query Frame = 0
Query:  155 EAMQRIAQKAWHRCHAGSLGLAGEGYLEREREGHGGVKEVEACLLCEESFNTLARRQHRCRLCALPVCGDCSSKRLPLGAYLGGGGREGGKGGGVETMVRVCDGCFNWGVYEMLKLRVSVGGERVHDRKEAKFVEAGARERAEERELFGQSREKSGGRGGLMNWLRKEANPAGQA-SRRATQGVMAAMGELRHGLQDRGERLESLADKTTELADSSAQFAEMAKQLN 380
            +A Q++   A      GSL +        + +  GG  +  +C LC   F  ++ R+  C++    VC DCS+KRL           + GK        RV DG FN G +E  K         +H ++     + G    A  RE  G            + WLR E++   +  +     G ++++   R+ + +RG++L+ LADK+  L  +S  FA MAK+LN
Sbjct: 1615 KASQKVYSSAPKVNVVGSLRILKNISSVVDSDSPGG-SDANSCALCWSEFGVISNRKQFCQVSYRYVCNDCSTKRL----------VDDGKD------YRVSDGQFNAGRFEETKAIAIASATNIHSKQTGASQKKGRSRVAHARETLG------------LTWLRGESSEKTEPNTNEKVSGAISSISHTRNAVLERGDKLQGLADKSEALNQASLDFANMAKELN 1812          
BLAST of EWM25492.1 vs. NCBI_GenBank
Match: gi|1210522784|dbj|GAX18480.1| (hypothetical protein FisN_2Lh137 [Fistulifera solaris])

HSP 1 Score: 79.7221 bits (195), Expect = 2.694e-12
Identity = 66/212 (31.13%), Postives = 100/212 (47.17%), Query Frame = 0
Query:  187 GHGGVKEVEACLLCEESFNTLARRQHRCRLCALPVCGDCSSKRLPLGAYLGGGGREGGKGGGVETMVRVCDGCFNWGVYEMLKLRVSVGGERVHDRKEAK-----FVEAGARERAEERE----LFGQSREKSGGRGGLMNWLRKEANPAGQASRRATQGVMAAMGELRHGLQDRGERLESLADKTTELADSSAQFAEMAKQLNERYGGGGGW 389
            G  G  + ++C +C +SF T+  RQHRCR+    VC DCS+KR+              K    E   RV DG F +G ++ L          V ++  A      F   G R   E+ +    LFG   E++     LM     E   +G A      G+   + E R  L +RG +++SLA+K+ ++ ++SA FA+MAKQL ++  GG  W
Sbjct: 1265 GQPGGSDEKSCAICWKSFGTIRNRQHRCRISRRYVCDDCSTKRV--------------KDEFTEH--RVSDGQFLFGRFDALNAGQICNAPEVLNKVSATRVPSSFANKGNRTVQEDLQNRDSLFGGIIEEASN---LMFGDGDEKVSSGVA------GITGTLNETRDALNERGGKIDSLAEKSEKMVEASANFADMAKQLRKQTEGGFFW 1451          
BLAST of EWM25492.1 vs. NCBI_GenBank
Match: gi|1210512903|dbj|GAX28045.1| (hypothetical protein FisN_2Hh137 [Fistulifera solaris])

HSP 1 Score: 73.9442 bits (180), Expect = 1.871e-10
Identity = 57/227 (25.11%), Postives = 102/227 (44.93%), Query Frame = 0
Query:  168 CHAGSLGL-AGEGYLEREREGHGGVKEVEACLLCEESFNTLARRQHRCRLCALPVCGDCSSKRLPLGAYLGGGGREGGKGGGVETMVRVCDGCFNWGVYEMLKLRVSVGGERVHDRKEAKFVEAGARERAEERELFGQSREKSGGRGGLM----NWLRKEANPAGQASRRATQGVMAAMGELRHGLQDRGERLESLADKTTELADSSAQFAEMAKQLNERYGGGGGW 389
            C A    L + +  L     G  G  + ++C +C + F T+  RQHRCR+    VC +CS+KR+                    T  RV DG +    ++ L  + +    +V ++         A +  +E       R +    GG++    N +  + +   +       G+ + + E R  L +RG++L+SLA+K+ ++ ++SA FA+MAKQL ++  G   W
Sbjct: 1215 CRATPFALISSDNKLAIPNSGQPGGSDEKSCAICWKPFGTIRNRQHRCRISRRYVCDECSTKRV----------------TDESTEHRVSDGQYLLARFDALNSQQTRDSPQVLNKASETRPATKANQTVQE-----DLRNRDSLFGGIIEQASNLMFGDGD---EKVNSGVPGIASTLNETRDALNERGQKLDSLAEKSEKMVEASANFADMAKQLRKQSEGSFFW 1417          
The following BLAST results are available for this feature:
BLAST of EWM25492.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585107258|gb|EWM25492.1|0.000e+0100.00zinc finger FYVE-type, partial [Nannochloropsis ga... [more]
gi|224004982|ref|XP_002296142.1|2.688e-1226.87predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210522784|dbj|GAX18480.1|2.694e-1231.13hypothetical protein FisN_2Lh137 [Fistulifera sola... [more]
gi|1210512903|dbj|GAX28045.1|1.871e-1025.11hypothetical protein FisN_2Hh137 [Fistulifera sola... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5193rna5193Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications