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Properties
| Property Name | Value |
|---|
| Product | putative cleavage and polyadenylation specificity factor subunit 2 |
| Orig transcript id | gnl|cribi|Naga_100032g44.270.mrna |
| Orig protein id | gnl|cribi|Naga_100032g44.270 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:375069..378259 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5189 ID=rna5189|Name=rna5189|organism=Nannochloropsis gaditana|type=mRNA|length=2025bp
ATGATGCACTCACGTCCATGCAATACACATATGATAGGGCGCCCCGCGGA
TAGTTTTCCGCTTTTCGTCCTTGTGAAGCAACCGGTGCGCCGATTGCTGA
GGAAGGACAAGGCCTTAAAGCATCGCTCAGAAGCAAACTCACTCTGTGCC
CTAATTCGTGCGCATCCCTCACTCTTGTCTATGGACACCGATCCTGAGCC
GGCAGTCTTGGCTATATTGCTGGCCTTGGCTACCTTTTATCTGCTCCGCT
ACTATCGAAGCCCTGATGTCTCCCCATCAGTCACTGTCCTCATATATATA
TCATGGTTGCTGGGTTTTGCCGGTGTTTTCCTCCTGCCATACGACCTAGG
AGATGTGCAGGTGTATCATCGCTCCCTGCCGTGGATTTTGAAAGTATGGA
AAGGCATCTACTGGTCCACCTTCATTCTCACCTGGCTGGTGCTCCCCATT
GTCTTCTCTTATCTAGAGAGCGGATACTTCACCCCCCGGGACAGGATCCT
GGATGCGCTCCGGGACCAGCTCCGCATGGCCTTCATCGCCCTGGTTGCTT
TGGTCGGCTTCTGTATCTATTTGGTCGCACAACGCTACACCCTGGCCGGA
GCGGAGGGCCTTTTGATGGCCCTGGGGAACACGTACGGACTCCTCTTCGT
CGTCGTCTTGTTGGGCAACGGCCTGGTCGAGGTGCCTCGGAAGCTCTGGA
AATCCTCCTTCCCAGACCAGGAGCTCAAACGCCTCTACTTCCGGTCGTCC
CTCGTTGACAGCGACCTGCATGACGCCGTTTGTGTCCTTTCGGACGTGGA
GGCTGAAGTCTCGGCCCTGCGGGAGCAACTTCGTCAGAGCCCTCCGGCCG
GCGAGGAGCTCGCCCTGGAACTCGACGCCTGCATGAAGATCCTCCAAGAC
ACGCGTGCCTCCTTCCGCCATCGCCCCGAGGATATGACCCTGGGAATGCT
CCTCCCCCGAACCCCCTTTGGGGTCAACAGCCACCCGACGAGCGGTCCCC
CGCCCTCCTTGGCCCATTTGGCCGGCCTGCACGCCCGCTTGAAAAAGGCT
CAGCTCCGCGTCCAGGTGCTGAAGAAGCAGCGGGACGCTGTGATCAGCAA
GGTGGAGGTCATCGAGGCGGTCTGTCAGGGCGCGCTCCCGTACCCGTCCG
ACGTGAAGGCGGGTGACGGGGAAGGGTGCTGCGCCGCCCTCGGTGCGTGG
GCCTCCCACTTGGGCACCGTCCTCGCCTGGTACTGGCTCACGACGCTTTC
GCACTGCACGCTCCGGCTGCTGGCCATTCTGGGCTGGTTTCTGACCGTCT
GCTTCCTCTGGAGTCAGGTCTTCCTCGGGTCGCCCTATGCCCTGTCGCCT
TACGGGGCTTTCCAGCAAGCATTTGGCACGTCCTCGCCGTTCGCGATTCA
ACTCGCGATCGCCGTTCCGCTGGCCTACGTTTCCATCTGCACCTATCGCT
CCCTTTTTAAATTCAAACTTTTCGGCGAATTTTCCCTGCAAGGACCGCAC
CAATCTCTGGCTGGGCCGCTCCTCGTCAACGCCCAGTACCTGATCCGTCT
CCAGTTTCCCCTGGCCTACAATTTCCTCCTTATGCTTCGCTCTCCGTCCT
CGAAACAAACGGCCTTCCGGCATCTGATGAGCAACATGGCCGTAGTCCCT
CTCTTGGGAAGAGGCTTCAGTGTCTATGCACCCCTGATGATGGTCGTCTT
GGCCGCGTTCACCTACTTCAGGGGATACGCCCGGCTACTGAGGTTGGTCG
GGGCCTACCACGAGGACCTGATATCCGGGGAGGAGCAAGAGGAGATGATC
CAGCAGGGGCGGTCTCTGGCCCGGAGGAGACGATATCCGCTGCCATCTGC
AGGGGGGAACAACAGACCAGGTCGTGGTGAGGATGGGTTCGCGAGCGGCT
CAGTTAGCTTGAGTGGCAGCGGAGGTGGGGGGAAGGCCACGACGGGCACC
ATGCGCGTTCAGCAAGAACTGCCACCGGGCCCTTTGAGGGGTTCAACGGC
GGCTTATACGCAGCTCAAGACGTAA back to topprotein sequence of rna5189 >rna5189-protein ID=rna5189-protein|Name=rna5189|organism=Nannochloropsis gaditana|type=polypeptide|length=997bp
MPDGAGRAAAAKNEGNSDVKDLDVEPTAENIAMSPGDAARGTPDAPGEET
GSTASAPSPEMSSAVEAEFPAPMEVDEAVLPSESQGSANGGVPDSVQAEA
GAGPDASRPAPLLPAVSAQVPPPPPAASDTGEGLTFRVLYGVLEHEPLCY
LLKVGEATLLLDCGWDVQLDEALLEPLLPVLPQVQLVLLSFPDLSHMGAL
PWVAKHLRPGVPIYTTQPVFKMAQMVLYDLYLNKCMDTASGAAGCPAFTL
DEVDAAMARFQLLKFSQPLEVRQQGRFYLSVTPYPAGRILGGCFWRVNYK
KMEEIVYAVDFNLKSERHLTGAVEAFNALSADKEQRPCLFITDARPSPNL
STDERKVETEFLAAATGTLRKGGHVLIPVETSGRAQELLLALNGHWRSDR
LLWGYKIVLLHHMARNVLHFTKSMVEYMHPEVIRDFDRSLRNPFSLKHVV
PAQSMLELEAAMGEYRNPVVVLASDEGMDTGFSRALATRWASGPENALLL
CGHLRKGSLAESFWKLRHLPKAALSFSVPVIERIVGEELAGLREKEDRER
RKALEAEEFRRQAHELMEGTVGAVFSEEQGMLAGNSSNGPLAPLQASSSA
KRLRKTAAMYRRPRYLVFGCRDPASVEVDAYGEPLREGECVDEGNAGGGP
QAGTARGLVFQGPGAGGGGGGVQRWGYLDDVLMTEGEAQVRAGTGALKFL
MRESVVEVRWRVRAFPMEGRSDGKNLRAILTNLAPRNIIFVRGTPESFTD
LTLHAGKMLGPSTRLWTPPGPGKGGQEEQLGELVGVLDGLVGGSAAEGAM
AASVAAAAAAAATEAARTVGIRFDSKVTDVSLEEDEGEEEWREEAAPLVL
KEMGNYRLALVQAVASEDRVDANGKPLLRCQPVVATKGGTVLQDKGSEEV
SDGAETAFSVLSQTRAPLWLADGDVFLTESSQRQSLRQKLREAGVNPDFH
VGPEGASLICDGTTVVRVKDNKVMLEGPLSETYFKVRQAIYSRFVAL back to topmRNA from alignment at CM002465.1:375069..378259- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna5189 ID=rna5189|Name=rna5189|organism=Nannochloropsis gaditana|type=mRNA|length=3191bp|location=Sequence derived from alignment at CM002465.1:375069..378259- (Nannochloropsis gaditana)
GAGTCCGACTTTGCCATGTACGAAGTAGAAGGAATGCTCCAGATGTAGAC
CTGAAATGGTGATATTTGACTTTTTCGTTGCACCCTTCTTAAGAGGATGT
CTGAATTGCATGTTGTTGCGCCTTACGCTGTGCAGACAGTAACTTTCCTC
GCGGTCAATACGCCCCCTTTCCCCCCCCACCCCAGAGGCAAATTAGCATG
CCCGATGGTGCAGGTCGAGCCGCCGCCGCCAAGAACGAGGGAAATAGCGA
TGTAAAGGACCTCGACGTGGAACCAACAGCGGAAAATATCGCTATGTCGC
CCGGTGACGCTGCCAGAGGGACTCCTGACGCGCCGGGAGAAGAAACGGGT
TCCACGGCCAGCGCCCCCTCGCCTGAGATGTCATCCGCCGTGGAGGCAGA
GTTCCCCGCTCCAATGGAGGTAGACGAAGCTGTTCTTCCCAGCGAGAGTC
AAGGAAGTGCCAACGGGGGCGTTCCCGACTCTGTCCAGGCCGAGGCTGGG
GCCGGTCCTGACGCCTCCCGTCCCGCGCCCCTGCTTCCCGCTGTGTCCGC
CCAGGTGCCTCCACCACCTCCAGCAGCCTCCGACACAGGGGAGGGCCTGA
CATTCCGGGTCCTTTACGGGGTGCTCGAGCACGAACCCTTGTGCTACCTG
TTAAAAGTCGGGGAGGCGACCCTTCTGCTGGACTGCGGGTGGGACGTGCA
GCTGGATGAAGCCTTGCTCGAGCCCCTGCTTCCTGTCCTTCCCCAGGTCC
AGCTCGTCCTCCTTTCCTTTCCAGACCTTTCCCACATGGGGGCCTTGCCC
TGGGTGGCCAAGCACCTGCGTCCCGGCGTTCCAATTTACACGACCCAGCC
TGTTTTCAAGATGGCTCAGATGGTGCTCTACGACCTGTACCTGAACAAGT
GCATGGACACTGCCAGCGGCGCCGCCGGGTGTCCCGCCTTTACACTCGAC
GAGGTGGACGCCGCCATGGCGCGTTTCCAGCTTCTCAAGTTCTCGCAGCC
GCTGGAAGTGCGGCAGCAGGGCCGCTTCTACCTGAGTGTGACTCCTTACC
CTGCGGGACGCATCCTGGGCGGGTGCTTTTGGCGCGTGAACTACAAGAAG
ATGGAGGAGATCGTGTACGCGGTGGACTTCAATCTCAAGAGCGAACGGCA
CCTTACGGGGGCCGTGGAGGCCTTCAATGCGCTGAGCGCGGACAAGGAGC
AACGACCCTGCCTCTTCATCACGGACGCGCGCCCCTCCCCCAATCTGTCG
ACGGACGAACGCAAGGTCGAGACCGAGTTCCTGGCGGCGGCTACCGGGAC
CTTGCGGAAGGGTGGGCATGTCCTCATCCCCGTCGAGACCTCGGGACGCG
CCCAAGAGCTCTTGCTCGCGCTCAACGGGCACTGGCGCTCCGATCGGCTC
CTGTGGGGCTACAAGATCGTCCTCCTCCACCACATGGCGCGTAACGTGCT
TCACTTCACCAAGAGCATGGTCGAGTACATGCACCCCGAGGTCATCCGGG
ACTTCGACCGCTCCCTGCGCAACCCCTTCTCGCTCAAGCACGTGGTCCCC
GCCCAGAGCATGCTCGAGCTGGAGGCCGCCATGGGCGAGTACCGGAACCC
GGTGGTGGTGCTTGCGAGCGACGAGGGCATGGACACGGGCTTCTCGCGCG
CCCTCGCCACCCGGTGGGCGAGCGGGCCTGAGAACGCCTTGTTATTGTGC
GGACATCTGCGGAAGGGGAGCCTGGCAGAAAGCTTCTGGAAGCTTCGGCA
CCTGCCCAAGGCGGCGCTTTCCTTCAGCGTTCCAGTTATAGAGCGCATCG
TGGGGGAGGAACTGGCAGGCCTGCGAGAGAAGGAAGACAGGGAGCGTCGG
AAGGCTTTGGAGGCGGAAGAGTTCCGCCGACAGGCCCATGAGCTTATGGA
GGGTACGGTGGGCGCGGTCTTCTCGGAGGAGCAAGGGATGTTGGCAGGAA
ACTCGTCCAACGGCCCCCTGGCACCCCTTCAGGCCTCCTCCTCGGCCAAA
CGCCTGCGTAAGACCGCTGCCATGTACCGCCGGCCTCGCTATCTGGTCTT
CGGGTGTCGAGATCCAGCCAGCGTGGAGGTGGATGCCTATGGAGAGCCGC
TGCGGGAGGGGGAATGCGTGGACGAGGGCAACGCCGGGGGGGGGCCGCAG
GCGGGGACTGCGCGGGGGCTCGTCTTCCAAGGGCCAGGGGCAGGGGGAGG
AGGTGGGGGAGTGCAGCGGTGGGGGTATCTGGACGACGTGCTCATGACAG
AGGGAGAGGCTCAGGTACGAGCGGGGACGGGTGCCTTGAAGTTTCTGATG
CGGGAGTCTGTGGTGGAAGTGCGGTGGCGCGTCAGAGCCTTCCCCATGGA
GGGCCGCTCCGACGGGAAGAACCTGCGGGCAATTTTGACGAACCTGGCGC
CTCGAAACATCATATTCGTGCGCGGCACGCCTGAGTCTTTCACGGACCTG
ACGTTGCATGCAGGCAAGATGCTGGGGCCCTCCACACGTCTGTGGACACC
GCCGGGCCCAGGGAAGGGAGGGCAGGAGGAGCAGCTGGGAGAGCTGGTGG
GGGTTCTCGATGGCCTTGTGGGGGGATCTGCTGCAGAAGGGGCCATGGCG
GCTTCTGTAGCCGCGGCAGCAGCCGCAGCCGCCACAGAAGCCGCCAGGAC
GGTGGGTATACGGTTTGATAGCAAGGTCACGGATGTGAGCTTGGAGGAGG
ACGAAGGAGAGGAGGAATGGAGGGAGGAAGCGGCACCCTTGGTGTTGAAA
GAGATGGGTAACTATCGTCTGGCGCTCGTGCAGGCAGTGGCCTCGGAGGA
CCGCGTGGATGCGAACGGAAAGCCTCTGCTGCGCTGCCAACCTGTCGTGG
CGACAAAGGGAGGCACCGTCTTACAAGACAAAGGTAGTGAGGAAGTGAGC
GATGGTGCAGAAACAGCTTTCTCAGTCCTGTCCCAGACAAGGGCGCCGCT
CTGGCTGGCGGACGGAGACGTGTTCTTGACGGAATCCTCTCAGCGCCAGT
CTCTGCGGCAGAAGCTCCGAGAGGCGGGTGTGAACCCCGACTTCCACGTT
GGACCGGAAGGGGCTTCCTTGATCTGCGATGGGACGACAGTGGTAAGGGT
GAAGGACAATAAAGTCATGCTAGAGGGCCCGCTTAGCGAGACTTACTTCA
AAGTTCGGCAAGCCATCTATTCGCGGTTCGTGGCTTTGTAG back to topCoding sequence (CDS) from alignment at CM002465.1:375069..378259- >rna5189 ID=rna5189|Name=rna5189|organism=Nannochloropsis gaditana|type=CDS|length=2994bp|location=Sequence derived from alignment at CM002465.1:375069..378259- (Nannochloropsis gaditana)
ATGCCCGATGGTGCAGGTCGAGCCGCCGCCGCCAAGAACGAGGGAAATAG
CGATGTAAAGGACCTCGACGTGGAACCAACAGCGGAAAATATCGCTATGT
CGCCCGGTGACGCTGCCAGAGGGACTCCTGACGCGCCGGGAGAAGAAACG
GGTTCCACGGCCAGCGCCCCCTCGCCTGAGATGTCATCCGCCGTGGAGGC
AGAGTTCCCCGCTCCAATGGAGGTAGACGAAGCTGTTCTTCCCAGCGAGA
GTCAAGGAAGTGCCAACGGGGGCGTTCCCGACTCTGTCCAGGCCGAGGCT
GGGGCCGGTCCTGACGCCTCCCGTCCCGCGCCCCTGCTTCCCGCTGTGTC
CGCCCAGGTGCCTCCACCACCTCCAGCAGCCTCCGACACAGGGGAGGGCC
TGACATTCCGGGTCCTTTACGGGGTGCTCGAGCACGAACCCTTGTGCTAC
CTGTTAAAAGTCGGGGAGGCGACCCTTCTGCTGGACTGCGGGTGGGACGT
GCAGCTGGATGAAGCCTTGCTCGAGCCCCTGCTTCCTGTCCTTCCCCAGG
TCCAGCTCGTCCTCCTTTCCTTTCCAGACCTTTCCCACATGGGGGCCTTG
CCCTGGGTGGCCAAGCACCTGCGTCCCGGCGTTCCAATTTACACGACCCA
GCCTGTTTTCAAGATGGCTCAGATGGTGCTCTACGACCTGTACCTGAACA
AGTGCATGGACACTGCCAGCGGCGCCGCCGGGTGTCCCGCCTTTACACTC
GACGAGGTGGACGCCGCCATGGCGCGTTTCCAGCTTCTCAAGTTCTCGCA
GCCGCTGGAAGTGCGGCAGCAGGGCCGCTTCTACCTGAGTGTGACTCCTT
ACCCTGCGGGACGCATCCTGGGCGGGTGCTTTTGGCGCGTGAACTACAAG
AAGATGGAGGAGATCGTGTACGCGGTGGACTTCAATCTCAAGAGCGAACG
GCACCTTACGGGGGCCGTGGAGGCCTTCAATGCGCTGAGCGCGGACAAGG
AGCAACGACCCTGCCTCTTCATCACGGACGCGCGCCCCTCCCCCAATCTG
TCGACGGACGAACGCAAGGTCGAGACCGAGTTCCTGGCGGCGGCTACCGG
GACCTTGCGGAAGGGTGGGCATGTCCTCATCCCCGTCGAGACCTCGGGAC
GCGCCCAAGAGCTCTTGCTCGCGCTCAACGGGCACTGGCGCTCCGATCGG
CTCCTGTGGGGCTACAAGATCGTCCTCCTCCACCACATGGCGCGTAACGT
GCTTCACTTCACCAAGAGCATGGTCGAGTACATGCACCCCGAGGTCATCC
GGGACTTCGACCGCTCCCTGCGCAACCCCTTCTCGCTCAAGCACGTGGTC
CCCGCCCAGAGCATGCTCGAGCTGGAGGCCGCCATGGGCGAGTACCGGAA
CCCGGTGGTGGTGCTTGCGAGCGACGAGGGCATGGACACGGGCTTCTCGC
GCGCCCTCGCCACCCGGTGGGCGAGCGGGCCTGAGAACGCCTTGTTATTG
TGCGGACATCTGCGGAAGGGGAGCCTGGCAGAAAGCTTCTGGAAGCTTCG
GCACCTGCCCAAGGCGGCGCTTTCCTTCAGCGTTCCAGTTATAGAGCGCA
TCGTGGGGGAGGAACTGGCAGGCCTGCGAGAGAAGGAAGACAGGGAGCGT
CGGAAGGCTTTGGAGGCGGAAGAGTTCCGCCGACAGGCCCATGAGCTTAT
GGAGGGTACGGTGGGCGCGGTCTTCTCGGAGGAGCAAGGGATGTTGGCAG
GAAACTCGTCCAACGGCCCCCTGGCACCCCTTCAGGCCTCCTCCTCGGCC
AAACGCCTGCGTAAGACCGCTGCCATGTACCGCCGGCCTCGCTATCTGGT
CTTCGGGTGTCGAGATCCAGCCAGCGTGGAGGTGGATGCCTATGGAGAGC
CGCTGCGGGAGGGGGAATGCGTGGACGAGGGCAACGCCGGGGGGGGGCCG
CAGGCGGGGACTGCGCGGGGGCTCGTCTTCCAAGGGCCAGGGGCAGGGGG
AGGAGGTGGGGGAGTGCAGCGGTGGGGGTATCTGGACGACGTGCTCATGA
CAGAGGGAGAGGCTCAGGTACGAGCGGGGACGGGTGCCTTGAAGTTTCTG
ATGCGGGAGTCTGTGGTGGAAGTGCGGTGGCGCGTCAGAGCCTTCCCCAT
GGAGGGCCGCTCCGACGGGAAGAACCTGCGGGCAATTTTGACGAACCTGG
CGCCTCGAAACATCATATTCGTGCGCGGCACGCCTGAGTCTTTCACGGAC
CTGACGTTGCATGCAGGCAAGATGCTGGGGCCCTCCACACGTCTGTGGAC
ACCGCCGGGCCCAGGGAAGGGAGGGCAGGAGGAGCAGCTGGGAGAGCTGG
TGGGGGTTCTCGATGGCCTTGTGGGGGGATCTGCTGCAGAAGGGGCCATG
GCGGCTTCTGTAGCCGCGGCAGCAGCCGCAGCCGCCACAGAAGCCGCCAG
GACGGTGGGTATACGGTTTGATAGCAAGGTCACGGATGTGAGCTTGGAGG
AGGACGAAGGAGAGGAGGAATGGAGGGAGGAAGCGGCACCCTTGGTGTTG
AAAGAGATGGGTAACTATCGTCTGGCGCTCGTGCAGGCAGTGGCCTCGGA
GGACCGCGTGGATGCGAACGGAAAGCCTCTGCTGCGCTGCCAACCTGTCG
TGGCGACAAAGGGAGGCACCGTCTTACAAGACAAAGGTAGTGAGGAAGTG
AGCGATGGTGCAGAAACAGCTTTCTCAGTCCTGTCCCAGACAAGGGCGCC
GCTCTGGCTGGCGGACGGAGACGTGTTCTTGACGGAATCCTCTCAGCGCC
AGTCTCTGCGGCAGAAGCTCCGAGAGGCGGGTGTGAACCCCGACTTCCAC
GTTGGACCGGAAGGGGCTTCCTTGATCTGCGATGGGACGACAGTGGTAAG
GGTGAAGGACAATAAAGTCATGCTAGAGGGCCCGCTTAGCGAGACTTACT
TCAAAGTTCGGCAAGCCATCTATTCGCGGTTCGTGGCTTTGTAG back to top
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