rna5180, rna5180 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5180
Unique Name	rna5180
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2379
Alignment location	CM002465.1:337905..338518 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100032g34.267.mrna
Orig protein id	gnl\|cribi\|Naga_100032g34.267
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:337905..338518 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100032g34	gene5000	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5180	rna5180-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25524.1	cds5168	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:337905..338518-
coding sequence from alignment at CM002465.1:337905..338518-

mRNA sequence

>rna5180 ID=rna5180|Name=rna5180|organism=Nannochloropsis gaditana|type=mRNA|length=2379bp
GGCACAGGAATGCTCGGCAATGCCACGAAGCGGTCTTTGAGCCGCGTGGT
CCCTACATGCTGGCTGCTCGCGCGGCCATGGCAGGTACGCGCTGACAGAA
CACACCCTTTCATTTCAGCGAGGAGGGCTTACCTCATGCCATCTGCCCTT
TTTCCACGCCTAATTGTCCAGCCCGGTCATCGCGCCGCCTGGAGCCGGGC
TGTACAGGATGGGGAGGGATACCAACTTGCTGACCGATCGCGAGTTGCTA
AGGCGGATTTGCTCAGGCAGACTTTTGGGCGGCAGCATGCTGAGTGTCAC
GTGCAAAGACGAAGGTTATCTATGAGTGCATTACAGGAGCCACCCTACGA
TGAGGTCTCGTCCGGGCCACCTTCCTCCCCTGCCGGTGCCTCCGCCGGAG
GGGGTAAGCTTGTTCCTTTCTTATTGGCCGACATTGGGGAGGGGATCGCG
GAGGTAGAGCTGATGCAGTGGTTCGTTCAAGAAGGGGAGAACGTGAAACA
ATTTGACCGAGTCTGCGAAGTGCAATCGGACAAAGCTACCGTAGAAATTT
CTTCTCGCTATGACGGTGTGGTCCGACGCGTGCTGCACCCGGTCGGCTCC
GTTGTCAAGGTGGGCAGCGCCTTGATCGACATCGAGGTGGGAGGACAAGA
GAACTCTTCCAGCACCGCCACGCTAGCCACAGCGCCCACCATGAATAACG
CGGACGTGCCCTCGCCCGCGGAGGCGGCCGAAGCAGCCCTTGTCTCCTCT
CCTCCCTTAGGTGGGTCCGAGCCATTGCCGGTGCAAGCGCAGGCCTCGCA
CTCGAGTACAGCAGACCTCAAGAAGGGCCCCGAGACCACCTACAATAGCA
GGGACATGACAGGGGAGATCGTACCCACCACCCCGGCGGTGCGGCGCCTG
GCCAAGGAGCACGGCGTGGATTTGTCCCTGGTCCGTCCCACGGGACCCGA
GGGACGCGTGCTCAAAGGGGACGTGCTCGACTTTATCGCCGCCCACCAAG
GACACGTCGGGCTCCCTCCATCATTCTTCCCCGCCTCCCCCCTCCCCCCC
GGGGTGCCGGCGTCCGCGACAGGGACGCGGCCTGTTCCCGGGGAAGCTGC
CTCTCCAGCTGCCTCGCCCCCCTCCCCCGTTCCCCCGCATCCCTTGGGCA
GTTCTTCCTTTCTAAAACCGGCCGTCCTTCCCCCATTTTCTGCGGCGGCG
CTCACGGAACCGAAGCGAGTTCCTGTCCGCGGGATTATGCGCCAGATGGT
CAAATCCATGAATGCCAGTCTGAAGATCCCGCATTTCGGCTATCAGGACG
AGGTGTGCATGGATAAGGCCGCCGGCCTCCGCGCCTCCCTCCGCCCATTC
GCCGAGGCTCAAGGCTTCAAACTGACTTACTTGCCGATCATGCTCAAAGC
GGCGAGCTTGGCACTCCTGCGTTATCCCCTCCTAAACGCATCCCTCTCCG
CGGACGAGCGCGAGATAATCTACCACCCCGACCATCACATCGGCGTGGCC
ATGGCGACGAGCAAAGGCCTAGTGGTGCCGGTCTTGCGCAAGGTGCAAGA
AAGAAGCCTGCTGGAAATTGCGGGAGAATTGGCAGACTTTCAGAGAAAGG
CGGAGGGGGGAGACCAGGGCGGCGGAGGGTTCAAAGAGGAGGATTTTCAG
GGGGCCACATTTTCTATGAGCAACATCGGGAGCATGGGGGGCACGTATAT
GGACGCAAAGATTGTTCCGCCGCAGGTTGCCATTGGAGCCATCGGGCGTA
TCCAGACGCTGCCCCGATTCGGGCCGGCAAGGACCGTGGAAGGAAGCCAA
GTGAGCTCAGAGAAAGGCCTGGTGGTGCTTCCTACGAAAGTCATGGCGAT
ATCCTGGGCGGGAGATCACCGCGTGGTGGACGGGGCAACCATGGCCAAAT
TCTCGAACCTGTGGAAATCATATTTGGAGGAGCCCGCCACCATGTTGGCG
GAGACGCGGTAGATGGGCGTAAAATCGGACTGTGCAGAAGACGGGGCTGT
GAAGGGGACTTACATAGGAAAAACATGTCGAAAAGGTGTACAGGATGACA
CATGCAGCATTTTAGGGAAAAGGGGAGGCACGTGCAGGTCAGAAATTGCG
AAAAGTGATCATTCATTGTGACGATCAAGTCAGGATTTAGGTCCGATGTG
TAGATGACTGTATCATGGCGATGTAGATTGAGAAATTCATGCTGGTATCA
GCACGGCAAGGAAGAGAGGACGATGTGTCTATAAAAGCTCCTTCCTTATA
CTACTAGCGCGCTTAGAGGAACGAGGAGTGGAAGTACGGCTAGAGGTCAC
GGCACGAAAGTCTGGCCGTTATAATCCCGTTGTATCGTTGTTAAAGAAAC
TATAGAAGTAATTTGAGGTGGCAATGGTT

protein sequence of rna5180

>rna5180-protein ID=rna5180-protein|Name=rna5180|organism=Nannochloropsis gaditana|type=polypeptide|length=137bp
MASRLANFRNVVLMLRDLPSAVTFYGKEGLGLALTRRSDMTAEFDTGGTP
LVLKVADGEAMCSTGYSPLLCFDVVDMDTTIVRLLQLGASLDGPIKYPLY
GKIGMIRSPDGHMIGLFEPSIQPSSPAPPEAEDRQPR

mRNA from alignment at CM002465.1:337905..338518-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5180 ID=rna5180|Name=rna5180|organism=Nannochloropsis gaditana|type=mRNA|length=614bp|location=Sequence derived from alignment at CM002465.1:337905..338518- (Nannochloropsis gaditana)
ATGGCCAGTCGTCTAGCCAACTTCAGGTAAGTTGCGTTTCTCTTAATATG
AGTCGTAGCCGACCTCCCCACCCCCTGGCAGACATGTACCGTATTCACGC
GTGGTACACCATCCGACAGGAATGTCGTCCTGATGCTAAGAGATCTTCCT
TCAGCCGTGACATTCTATGGGAAAGAGGGTCTAGGTCTTGCATTAACGCG
TCGAAGTGATATGACGGCTGAATTTGACACGGGAGGCACCCCCCTAGTGT
TGAAGGTCGCGGACGGGGAAGCCATGTGCAGCACGGGTTACTCCCCTTTG
CTGTGCTTCGATGTGGTAGACATGGATACCACAATAGTGCGCTTGTTACA
ATTAGGCGCGTCTTTGGATGGTCCAATCAAATACCCACTTTACGGCAAGG
TGCGACAAGGGTGGTAATGGGGAGGGGGTATTGTGCATTCGTCATTCCAA
GACAAGTAAATGAACTCTGTACACACTCACCGTACAATCGAACATGGAAT
ATATAGATAGGTATGATTCGTAGTCCTGATGGACACATGATAGGCCTCTT
CGAGCCCAGTATCCAGCCATCGTCTCCTGCACCACCTGAGGCAGAAGACC
GACAACCACGATGA

Coding sequence (CDS) from alignment at CM002465.1:337905..338518-

>rna5180 ID=rna5180|Name=rna5180|organism=Nannochloropsis gaditana|type=CDS|length=1242bp|location=Sequence derived from alignment at CM002465.1:337905..338518- (Nannochloropsis gaditana)
ATAGGTATGATTCGTAGTCCTGATGGACACATGATAGGCCTCTTCGAGCC
CAGTATCCAGCCATCGTCTCCTGCACCACCTGAGGCAGAAGACCGACAAC
CACGATGAGAATGTCGTCCTGATGCTAAGAGATCTTCCTTCAGCCGTGAC
ATTCTATGGGAAAGAGGGTCTAGGTCTTGCATTAACGCGTCGAAGTGATA
TGACGGCTGAATTTGACACGGGAGGCACCCCCCTAGTGTTGAAGGTCGCG
GACGGGGAAGCCATGTGCAGCACGGGTTACTCCCCTTTGCTGTGCTTCGA
TGTGGTAGACATGGATACCACAATAGTGCGCTTGTTACAATTAGGCGCGT
CTTTGGATGGTCCAATCAAATACCCACTTTACGGCAAGATGGCCAGTCGT
CTAGCCAACTTCAGATAGGTATGATTCGTAGTCCTGATGGACACATGATA
GGCCTCTTCGAGCCCAGTATCCAGCCATCGTCTCCTGCACCACCTGAGGC
AGAAGACCGACAACCACGATGAGAATGTCGTCCTGATGCTAAGAGATCTT
CCTTCAGCCGTGACATTCTATGGGAAAGAGGGTCTAGGTCTTGCATTAAC
GCGTCGAAGTGATATGACGGCTGAATTTGACACGGGAGGCACCCCCCTAG
TGTTGAAGGTCGCGGACGGGGAAGCCATGTGCAGCACGGGTTACTCCCCT
TTGCTGTGCTTCGATGTGGTAGACATGGATACCACAATAGTGCGCTTGTT
ACAATTAGGCGCGTCTTTGGATGGTCCAATCAAATACCCACTTTACGGCA
AGATGGCCAGTCGTCTAGCCAACTTCAGATAGGTATGATTCGTAGTCCTG
ATGGACACATGATAGGCCTCTTCGAGCCCAGTATCCAGCCATCGTCTCCT
GCACCACCTGAGGCAGAAGACCGACAACCACGATGAGAATGTCGTCCTGA
TGCTAAGAGATCTTCCTTCAGCCGTGACATTCTATGGGAAAGAGGGTCTA
GGTCTTGCATTAACGCGTCGAAGTGATATGACGGCTGAATTTGACACGGG
AGGCACCCCCCTAGTGTTGAAGGTCGCGGACGGGGAAGCCATGTGCAGCA
CGGGTTACTCCCCTTTGCTGTGCTTCGATGTGGTAGACATGGATACCACA
ATAGTGCGCTTGTTACAATTAGGCGCGTCTTTGGATGGTCCAATCAAATA
CCCACTTTACGGCAAGATGGCCAGTCGTCTAGCCAACTTCAG

Synonyms

Publications