rna5173, rna5173 (mRNA) Nannochloropsis gaditana

Overview
Namerna5173
Unique Namerna5173
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length405
Alignment locationCM002465.1:323876..324475 +

Link to JBrowse

Properties
Property NameValue
Productdienelactone hydrolase family protein
Orig transcript idgnl|cribi|Naga_100032g26.256.mrna
Orig protein idgnl|cribi|Naga_100032g26.256
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:323876..324475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100032g26gene4993Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5173rna5173-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25513.1cds5161Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5173 ID=rna5173|Name=rna5173|organism=Nannochloropsis gaditana|type=mRNA|length=405bp
ATGAGATTTGACGGGCTCTGTGAGGTCCATGCACTTGTGAAGGAACGCGT
GTCAAACGTGCTTTGGCTTTTATCTTCTCCTCCCTCTCCGCTTTATCTGC
TTGTCAACCTCTGCGCGATTCAATTCCCTGTGTTGTGCCCTGTGGGAGGT
AGAACGGGCAGCCGTAGCATCGCAGGAAACGCTTTGGAAGAAGCGACTGT
TCGTACGCATGATATCGAGGGCACAAGTACTCACTCCATAGCGAGACCTT
TCGCATTATTTTCCTCCCAACGTCATCACTTTGCTCCACACGCAGCACAA
GCCGCTCAAACGCACTATGGCCTGCAATGCATGCATGACCATTCCACCGG
TGGAGGATTCATACATTCCAATCGGTCAAACCATCACCACCACGGATGGG
CTTGA
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protein sequence of rna5173

>rna5173-protein ID=rna5173-protein|Name=rna5173|organism=Nannochloropsis gaditana|type=polypeptide|length=199bp
MYVPDIFGKTPQAFQVCDKLAAAGFWVAFPDVFRGKAWPLEKFPPPDRQE
LMEWIGGYPFEGRVKPDIACALALLRENGVERFGIVGFCWGGKMSTLSSQ
DAEVFRATASAHPSFVTVEDAALVNCPILLLPSKDEADLTPFIDAVKARG
VEASQEKFDDMHHGWVAARGDWKDPKQQARATEAIQLFVSFFTKHLKGE
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mRNA from alignment at CM002465.1:323876..324475+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5173 ID=rna5173|Name=rna5173|organism=Nannochloropsis gaditana|type=mRNA|length=600bp|location=Sequence derived from alignment at CM002465.1:323876..324475+ (Nannochloropsis gaditana)
ATGTACGTTCCGGACATTTTCGGCAAGACTCCTCAAGCCTTTCAAGTTTG
TGATAAACTTGCCGCCGCAGGCTTCTGGGTTGCATTCCCTGATGTTTTCC
GCGGAAAAGCTTGGCCCCTGGAGaagtttcctccccccgaccGACAGGAG
CTCATGGAATGGATTGGCGGTTATCCTTTCGAGGGTCGAGTGAAACCTGA
CATTGCATGTGCTCTGGCCTTGCTCCGAGAGAACGGTGTGGAAAGGTTTG
GTATTGTTGGCTTCTGCTGGGGCGGTAAGATGTCCACGTTGAGCAGCCAA
GACGCTGAAGTCTTTCGAGCCACTGCATCTGCCCATCCGAGCTTTGTCAC
GGTTGAGGATGCAGCTCTGGTCAATTGCCCgatcctgctcctcccgtccA
AAGATGAAGCGGATTTGACGCCTTTCATTGATGCGGTCAAAGCGCGCGGA
GTAGAGGCATCGCAGGAGAAATTTGATGACATGCACCACGGTTGGGTAGC
CGCGCGGGGTGACTGGAAGGATCCGAAGCAGCAAGCACGAGCGACGGAGG
CGATCCAGCTTTTCGTCTCGTTCTTCACCAAGCACTTGAAGGGCGAGTGa
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Coding sequence (CDS) from alignment at CM002465.1:323876..324475+

>rna5173 ID=rna5173|Name=rna5173|organism=Nannochloropsis gaditana|type=CDS|length=600bp|location=Sequence derived from alignment at CM002465.1:323876..324475+ (Nannochloropsis gaditana)
ATGTACGTTCCGGACATTTTCGGCAAGACTCCTCAAGCCTTTCAAGTTTG
TGATAAACTTGCCGCCGCAGGCTTCTGGGTTGCATTCCCTGATGTTTTCC
GCGGAAAAGCTTGGCCCCTGGAGaagtttcctccccccgaccGACAGGAG
CTCATGGAATGGATTGGCGGTTATCCTTTCGAGGGTCGAGTGAAACCTGA
CATTGCATGTGCTCTGGCCTTGCTCCGAGAGAACGGTGTGGAAAGGTTTG
GTATTGTTGGCTTCTGCTGGGGCGGTAAGATGTCCACGTTGAGCAGCCAA
GACGCTGAAGTCTTTCGAGCCACTGCATCTGCCCATCCGAGCTTTGTCAC
GGTTGAGGATGCAGCTCTGGTCAATTGCCCgatcctgctcctcccgtccA
AAGATGAAGCGGATTTGACGCCTTTCATTGATGCGGTCAAAGCGCGCGGA
GTAGAGGCATCGCAGGAGAAATTTGATGACATGCACCACGGTTGGGTAGC
CGCGCGGGGTGACTGGAAGGATCCGAAGCAGCAAGCACGAGCGACGGAGG
CGATCCAGCTTTTCGTCTCGTTCTTCACCAAGCACTTGAAGGGCGAGTGa
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Synonyms
Publications