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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100032g20.239.mrna |
| Orig protein id | gnl|cribi|Naga_100032g20.239 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:311799..314227 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5167 ID=rna5167|Name=rna5167|organism=Nannochloropsis gaditana|type=mRNA|length=894bp
ATGGAGGCAGGCGTGCTGCAGGCACGCAAAACGACAGACGTGGTGTCGGC
TCTGACTTTTGTCATGGCGGGCGCCGCTGCCGGACGTCTCCTTGCGTCTC
TGAGGGAGACATGTCTGCCACTGATGACAACGGAATTTAAGGAGGACGTT
TGCCTGTCTATCCTTATCTATCTCGTGGGATACGCTGCGTTGGGAGGGTT
CTCGCCTTTGATGCCCACCAAACGGAAGGCCTGGATAATGAGTGTCCTTT
GCTCGCTGGGCATGTCTCTAGGATCCCTACCCTACGTGTACCGACTTGTC
TACATCCACGGTTTCGACACGGGCAAGATGGTGTACGCGGACGATCGTCT
CAGCGTCTTCGTGATGTCATTTTTCATGACGTTTCTGGTTTTGGACATCG
TGGTTGGCCTTCGCATTTACCCCTCCGAGATAAGTTTTTTGACAGGATGG
TTTCACCACAGCTTGTATATGTGCGCATGTCTGTGGGCGATGATCCATCA
AATTAGCATCTCAGCCGTCGCAACCATGATTATGGAGGTGCCCACATTAG
TCATGGCTCTTGGGAGACTCGATAAATCCATGAGGAACGATTTCTTGTTT
GGCTCAACTTTTTTTGCCACGCGTATTGTGTATCTAGGAATATATATATA
TAAGTTGATGTGCGATGTCTCCCCCAGGGTTGTCGTGTGGCCAGTATGTC
TGCCTGCTATGGCACTGCACTTATTTTGGTTTCAAGGTTTCATCCAGCAA
CAAATGCGTTTAAGAACTCGTAGCTCAGAGGCAGGAGGTAGCTTGTGGAC
CCTCACATACATTTTCTTTGTAAACATTCCTTTTAAATGGGAAAGCTTGA
TGTGGTTTTGGCTGCACTTGGAGAAAACAGGCGGCATCAGCTGA back to topprotein sequence of rna5167 >rna5167-protein ID=rna5167-protein|Name=rna5167|organism=Nannochloropsis gaditana|type=polypeptide|length=305bp
MSLVHYQQCSSAHKMICNANSSMAAVALIALLLSVFQVPLHASGTQSDDS
ISAESSSGSFSRLLAYDLPLPHDWIREYEKDTRDMSQSFSYSYSFSFEYA
PTTSPSLVPAIAPTMQPNLPGTIPVVNLFLVVAGTPEEQFALVSALVLYF
IMALDVQESDISVDTPVLERLLHQSRRLADTDQGRLCSSGAPQNSTSISI
RNYEDAAKVQDSLDGIMNGTISLTAVEGDSTTFPVKDGICHGETTLSFVP
PPADTLNDKNKSSSEPEPLSATYISLIAVGGVAILCVIIFVARRRRPRST
VVAHN back to topmRNA from alignment at CM002465.1:311799..314227- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5167 ID=rna5167|Name=rna5167|organism=Nannochloropsis gaditana|type=mRNA|length=2429bp|location=Sequence derived from alignment at CM002465.1:311799..314227- (Nannochloropsis gaditana)
AAAGTCCAAGGGCTTCGTGGCGGTATTGACATGTTCTCAAGGCATTGATA
TGAACGAATATTATCCCGCCGGCTACATAATACTTTATGGTGGATCTAGA
GATGCGAAGGACGATGTAATTCCTATGTAACCGTTTCACGCTGCCATTTA
TGTCCTTGGTACATTATCAACAGTGTTCAAGCGCTCATAAAATGATCTGC
AACGCAAACTCTTCAATGGCCGCAGTGGCGCTTATCGCGTTGTTGCTGTC
TGTATTTCAGGTCCCGCTTCATGCATCAGGGGTACGTTTCATCACCACGG
CGGCACCGTTTCACCCACTTTTCCTGTGTATGGAATTTGACCAAATCTAA
ACTTATACTATAACTCCAACGATATTGAAGACACAATCTGATGACAGCAT
CAGCGCTGAAAGCAGCTCGGGCAGCTTCAGCCGATTGTTGGCCTATGACC
TGCCTTTGCCCCATGATTGGATTCGCGAGGTAAGGCTTGATTGGGTAGAT
TGAGAATTTGCATTCAAATATTCAGCCAATTCTTATTGAGAAATGTTTCT
CGTCAGACTTCTCAATAGCAACATTCGCTGCAACTACGTAAAAAGACCGT
GGCTGGTTATGTTTTGTTCAGCTCCTTGAGACCATGTTCGATGCTTTGAA
TGTAAATGCACTAACAATCTCTTCTCATGTGTTTCAAGCTCCCAATCTCC
ATCTGCTGTCACACTCATGATTCTTTCCACGAACAATTTCATGCATGCTC
GCCCCAGTATGAGAAGGACACCAGAGACATGTCGCAGTCCTTTTCCTACT
CCTACTCTTTTTCATTTGAGTATGCGCCAACCACATCACCCAGTGTAAGT
TGTTCTTGACCTAAGAATGATAAGAGCTGTTTTAGGAAGAATTTCTTCTC
TATTTACTACAAACCCTGATGCCGATATTTCCCCCCGCTTATCTTTCCTT
ATTGTGCTTGAAACCAGCTTGTCCCCGCGATAGCTCCCACTATGCAACCG
AATCTGCCTGGCACCATTCCCGTCGTCAACTTGTTCCTCGTAGTAGCTGG
CACACCCGAGGAACAATTTGCGCTCGTCAGCGCGCTTGTCCTCTATTTCA
TTATGGCTTTGGATGTGCAGGAAAGCGACATTTCGGTGGACACGCCGGTT
TTGGAAAGGCTTCTTCACCAAAGTCGCCGCCTTGCAGACACTGATCAAGG
TCGTTTGTGCTCTTCTGGTGCTCCTCAAAACTCTACCAGCATCAGTATCC
GTAACTATGAGGACGCGGTACGCAGGGACGGGATCTTAGGAGGCTTGATT
AGTCGACAGGCTGCATAACACACGTCTTTCGTACTGAGTTGTCTTTATAT
TTATTTCACCGTAAATAGAAATCCATGTTCAATTGTTTTTTATTTAGAAA
TTACATTAAAAGCGAATCCTTTTCACCCTGCTGTGTACATCGAACAGGCA
AAAGTGCAGGATTCTCTTGATGGAATCATGAATGGCACCATCTCTTTAAC
AGCTGTGGAAGGTGACAGCACTACTTTCCCGGTGAAGGATGGCATCTGCC
ATGGAGAGACAACACTTTCATTTGTTCCTCCACCTGCTGATACCCTGAAC
GATAAGAACAAGTCTTCTTCAGAGCCAGAGCCCCTTTCTGCCACATACAT
TTCACTCATTGCTGTGGGAGGCGTGGCTATTCTGTGCGTTATTATTTTTG
TGGCCCGGCGGCGGCGACCTCGTTCTACAGTGGTTGCGCATAACTAAGAG
CATAAACCGCGGAAAGCTCTATATTTGAGTGTGATGTACTTGGATGATTT
TGGACAAAGTCATTTGATGTCTACGCGATCGAAAAAGGAAAATTGAAAAG
AGAGCCAGATATTAAGATTCGGAGTAGGTTGATTTTTGAAAGTGTATGAG
GGTCTTTTCAGCGGTAATTATTTGAACAACAGGAAGTCCGGATATGGGAG
GATGGGAGGATATGATAGCCGCATTTCCTACATGGAGTGTAGGTCACGAT
GCCCCGGCATCGCCTTCAAGGCCAGTCGTGGGTCGAATGAGCGGTATTAA
TAAGCAAGAATACACGTGCATGAAAATATAGCATAAAGCGCTATACCAAG
CTCCTTGTGTGTATATTATGATTCTTTCTTGATAGATTGGCATTCTTAAG
GCATCACAAATACCTACAGAACATGCTTTCTTATTAGGGTTTCAACATCA
AGCGACGATCATCTCCCAACCCCATTTCTTCCGCAAAACAAAAGCAAGTC
GCACGATTATTCGTAGTCATCTGTCGTAGTGGCCGAATATCGGGGCGCTT
GAAGAGCTTACATGTCCTGCTCAAGAACCCGGAGGGAGAGTGGCAGCATC
TGTGACTGATGAAGATGCGCCTGCGCACATGCGACGGATGACCATTCCAA
CGTGTTTGCGACTGAAGAAAATACCCAAG back to topCoding sequence (CDS) from alignment at CM002465.1:311799..314227- >rna5167 ID=rna5167|Name=rna5167|organism=Nannochloropsis gaditana|type=CDS|length=4590bp|location=Sequence derived from alignment at CM002465.1:311799..314227- (Nannochloropsis gaditana)
GCAAAAGTGCAGGATTCTCTTGATGGAATCATGAATGGCACCATCTCTTT
AACAGCTGTGGAAGGTGACAGCACTACTTTCCCGGTGAAGGATGGCATCT
GCCATGGAGAGACAACACTTTCATTTGTTCCTCCACCTGCTGATACCCTG
AACGATAAGAACAAGTCTTCTTCAGAGCCAGAGCCCCTTTCTGCCACATA
CATTTCACTCATTGCTGTGGGAGGCGTGGCTATTCTGTGCGTTATTATTT
TTGTGGCCCGGCGGCGGCGACCTCGTTCTACAGTGGTTGCGCATAACTAA
CTTGTCCCCGCGATAGCTCCCACTATGCAACCGAATCTGCCTGGCACCAT
TCCCGTCGTCAACTTGTTCCTCGTAGTAGCTGGCACACCCGAGGAACAAT
TTGCGCTCGTCAGCGCGCTTGTCCTCTATTTCATTATGGCTTTGGATGTG
CAGGAAAGCGACATTTCGGTGGACACGCCGGTTTTGGAAAGGCTTCTTCA
CCAAAGTCGCCGCCTTGCAGACACTGATCAAGGTCGTTTGTGCTCTTCTG
GTGCTCCTCAAAACTCTACCAGCATCAGTATCCGTAACTATGAGGACGCG
TATGAGAAGGACACCAGAGACATGTCGCAGTCCTTTTCCTACTCCTACTC
TTTTTCATTTGAGTATGCGCCAACCACATCACCCAGTACACAATCTGATG
ACAGCATCAGCGCTGAAAGCAGCTCGGGCAGCTTCAGCCGATTGTTGGCC
TATGACCTGCCTTTGCCCCATGATTGGATTCGCGAGATGTCCTTGGTACA
TTATCAACAGTGTTCAAGCGCTCATAAAATGATCTGCAACGCAAACTCTT
CAATGGCCGCAGTGGCGCTTATCGCGTTGTTGCTGTCTGTATTTCAGGTC
CCGCTTCATGCATCAGGGGCAAAAGTGCAGGATTCTCTTGATGGAATCAT
GAATGGCACCATCTCTTTAACAGCTGTGGAAGGTGACAGCACTACTTTCC
CGGTGAAGGATGGCATCTGCCATGGAGAGACAACACTTTCATTTGTTCCT
CCACCTGCTGATACCCTGAACGATAAGAACAAGTCTTCTTCAGAGCCAGA
GCCCCTTTCTGCCACATACATTTCACTCATTGCTGTGGGAGGCGTGGCTA
TTCTGTGCGTTATTATTTTTGTGGCCCGGCGGCGGCGACCTCGTTCTACA
GTGGTTGCGCATAACTAACTTGTCCCCGCGATAGCTCCCACTATGCAACC
GAATCTGCCTGGCACCATTCCCGTCGTCAACTTGTTCCTCGTAGTAGCTG
GCACACCCGAGGAACAATTTGCGCTCGTCAGCGCGCTTGTCCTCTATTTC
ATTATGGCTTTGGATGTGCAGGAAAGCGACATTTCGGTGGACACGCCGGT
TTTGGAAAGGCTTCTTCACCAAAGTCGCCGCCTTGCAGACACTGATCAAG
GTCGTTTGTGCTCTTCTGGTGCTCCTCAAAACTCTACCAGCATCAGTATC
CGTAACTATGAGGACGCGTATGAGAAGGACACCAGAGACATGTCGCAGTC
CTTTTCCTACTCCTACTCTTTTTCATTTGAGTATGCGCCAACCACATCAC
CCAGTACACAATCTGATGACAGCATCAGCGCTGAAAGCAGCTCGGGCAGC
TTCAGCCGATTGTTGGCCTATGACCTGCCTTTGCCCCATGATTGGATTCG
CGAGATGTCCTTGGTACATTATCAACAGTGTTCAAGCGCTCATAAAATGA
TCTGCAACGCAAACTCTTCAATGGCCGCAGTGGCGCTTATCGCGTTGTTG
CTGTCTGTATTTCAGGTCCCGCTTCATGCATCAGGGGCAAAAGTGCAGGA
TTCTCTTGATGGAATCATGAATGGCACCATCTCTTTAACAGCTGTGGAAG
GTGACAGCACTACTTTCCCGGTGAAGGATGGCATCTGCCATGGAGAGACA
ACACTTTCATTTGTTCCTCCACCTGCTGATACCCTGAACGATAAGAACAA
GTCTTCTTCAGAGCCAGAGCCCCTTTCTGCCACATACATTTCACTCATTG
CTGTGGGAGGCGTGGCTATTCTGTGCGTTATTATTTTTGTGGCCCGGCGG
CGGCGACCTCGTTCTACAGTGGTTGCGCATAACTAACTTGTCCCCGCGAT
AGCTCCCACTATGCAACCGAATCTGCCTGGCACCATTCCCGTCGTCAACT
TGTTCCTCGTAGTAGCTGGCACACCCGAGGAACAATTTGCGCTCGTCAGC
GCGCTTGTCCTCTATTTCATTATGGCTTTGGATGTGCAGGAAAGCGACAT
TTCGGTGGACACGCCGGTTTTGGAAAGGCTTCTTCACCAAAGTCGCCGCC
TTGCAGACACTGATCAAGGTCGTTTGTGCTCTTCTGGTGCTCCTCAAAAC
TCTACCAGCATCAGTATCCGTAACTATGAGGACGCGTATGAGAAGGACAC
CAGAGACATGTCGCAGTCCTTTTCCTACTCCTACTCTTTTTCATTTGAGT
ATGCGCCAACCACATCACCCAGTACACAATCTGATGACAGCATCAGCGCT
GAAAGCAGCTCGGGCAGCTTCAGCCGATTGTTGGCCTATGACCTGCCTTT
GCCCCATGATTGGATTCGCGAGATGTCCTTGGTACATTATCAACAGTGTT
CAAGCGCTCATAAAATGATCTGCAACGCAAACTCTTCAATGGCCGCAGTG
GCGCTTATCGCGTTGTTGCTGTCTGTATTTCAGGTCCCGCTTCATGCATC
AGGGGCAAAAGTGCAGGATTCTCTTGATGGAATCATGAATGGCACCATCT
CTTTAACAGCTGTGGAAGGTGACAGCACTACTTTCCCGGTGAAGGATGGC
ATCTGCCATGGAGAGACAACACTTTCATTTGTTCCTCCACCTGCTGATAC
CCTGAACGATAAGAACAAGTCTTCTTCAGAGCCAGAGCCCCTTTCTGCCA
CATACATTTCACTCATTGCTGTGGGAGGCGTGGCTATTCTGTGCGTTATT
ATTTTTGTGGCCCGGCGGCGGCGACCTCGTTCTACAGTGGTTGCGCATAA
CTAACTTGTCCCCGCGATAGCTCCCACTATGCAACCGAATCTGCCTGGCA
CCATTCCCGTCGTCAACTTGTTCCTCGTAGTAGCTGGCACACCCGAGGAA
CAATTTGCGCTCGTCAGCGCGCTTGTCCTCTATTTCATTATGGCTTTGGA
TGTGCAGGAAAGCGACATTTCGGTGGACACGCCGGTTTTGGAAAGGCTTC
TTCACCAAAGTCGCCGCCTTGCAGACACTGATCAAGGTCGTTTGTGCTCT
TCTGGTGCTCCTCAAAACTCTACCAGCATCAGTATCCGTAACTATGAGGA
CGCGTATGAGAAGGACACCAGAGACATGTCGCAGTCCTTTTCCTACTCCT
ACTCTTTTTCATTTGAGTATGCGCCAACCACATCACCCAGTACACAATCT
GATGACAGCATCAGCGCTGAAAGCAGCTCGGGCAGCTTCAGCCGATTGTT
GGCCTATGACCTGCCTTTGCCCCATGATTGGATTCGCGAGATGTCCTTGG
TACATTATCAACAGTGTTCAAGCGCTCATAAAATGATCTGCAACGCAAAC
TCTTCAATGGCCGCAGTGGCGCTTATCGCGTTGTTGCTGTCTGTATTTCA
GGTCCCGCTTCATGCATCAGGGGCAAAAGTGCAGGATTCTCTTGATGGAA
TCATGAATGGCACCATCTCTTTAACAGCTGTGGAAGGTGACAGCACTACT
TTCCCGGTGAAGGATGGCATCTGCCATGGAGAGACAACACTTTCATTTGT
TCCTCCACCTGCTGATACCCTGAACGATAAGAACAAGTCTTCTTCAGAGC
CAGAGCCCCTTTCTGCCACATACATTTCACTCATTGCTGTGGGAGGCGTG
GCTATTCTGTGCGTTATTATTTTTGTGGCCCGGCGGCGGCGACCTCGTTC
TACAGTGGTTGCGCATAACTAACTTGTCCCCGCGATAGCTCCCACTATGC
AACCGAATCTGCCTGGCACCATTCCCGTCGTCAACTTGTTCCTCGTAGTA
GCTGGCACACCCGAGGAACAATTTGCGCTCGTCAGCGCGCTTGTCCTCTA
TTTCATTATGGCTTTGGATGTGCAGGAAAGCGACATTTCGGTGGACACGC
CGGTTTTGGAAAGGCTTCTTCACCAAAGTCGCCGCCTTGCAGACACTGAT
CAAGGTCGTTTGTGCTCTTCTGGTGCTCCTCAAAACTCTACCAGCATCAG
TATCCGTAACTATGAGGACGCGTATGAGAAGGACACCAGAGACATGTCGC
AGTCCTTTTCCTACTCCTACTCTTTTTCATTTGAGTATGCGCCAACCACA
TCACCCAGTACACAATCTGATGACAGCATCAGCGCTGAAAGCAGCTCGGG
CAGCTTCAGCCGATTGTTGGCCTATGACCTGCCTTTGCCCCATGATTGGA
TTCGCGAGATGTCCTTGGTACATTATCAACAGTGTTCAAGCGCTCATAAA
ATGATCTGCAACGCAAACTCTTCAATGGCCGCAGTGGCGCTTATCGCGTT
GTTGCTGTCTGTATTTCAGGTCCCGCTTCATGCATCAGGG back to top
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