rna5166, rna5166 (mRNA) Nannochloropsis gaditana

Overview
Namerna5166
Unique Namerna5166
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1933
Alignment locationCM002465.1:307047..308272 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100032g19.276.mrna
Orig protein idgnl|cribi|Naga_100032g19.276
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:307047..308272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100032g19gene4987Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5166rna5166-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25533.1cds5154Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5166 ID=rna5166|Name=rna5166|organism=Nannochloropsis gaditana|type=mRNA|length=1933bp
ATCCCATCTCCCCTGTAATTCTGCAAGACGAGTCACAACTGTGATTGCGG
AACATGACTTCTTATTAGCGGTCAAGATACGCGTGGGCGATGTTTTCTGG
AAGCGAGAACAGGCATGTAGTACCTGGCGAGTTCCAAGGTGATCTCTTTT
TTAATCCTTTACCAGTTTTGGTTGGTCGTACCATTGCACGCGACAACAAT
ATGGTCCTCGCAGCAATACGTCGTGTCGTTCTCTACATTTTCACGCAGTT
CCATGCTTAGTACGTGACCGGAGGCCATTGCTCGCTCATTCCCACTTCAA
CCGACACGGCGAGATTGTTTCTCAGGACGAACTGGAATAGTAATCATGGG
CAATCACTCAGCCAGCATGACTCCACCCAACGCTCAAGATCGACAACCCC
CTCCCGGGTCACAAGAGGCATACAGTGGCATCAGATTCGAGACCAGACCT
GGAATTGGACGTTTATTCAGTGGTACTGCTGATGCGGCTGCAGCAGCAGC
CAACGCCGCCAATGGAAGAGTTTGGGTTGTCAATCCACCCAGACGCCCCC
AGACAGTGGTCCAGCGGACCAAAATGATTAAAAACACCTGCCACCTGCAC
AAGGATACGCTCCGCCTTGGTGTCTCCCGGGAGAAGGAGACGGAGACAGG
AAAAGATATGAAAGATGGAGGAGGGGACAAGGCGAGGTATCACCTCTCCT
TCCGCTTCGACAGCGAGCAGCCCTGCACTGTGGCTGTGTACTGGGTTGCG
AGGGAGAACAAAGAGGCAGCAGGGCACCTCTGTCACACACCCCTGCTTCC
CGACAAGGAGACCTGGACTGCGGGTCCCGACCGCTTCCAGGCGGGGCACA
ACCAAGAGTACTCCACGAAAGCCACGGGCTACACTGGAGCGGACCTCTCC
CGGGCCAGGCAAGCATTGGGGGGAAGCGGGCGGGTGGGAGAGCCTCGGAC
GGGGGGGGAGGAAAGTGCGGTGGGCAAGGAGAGTCTGAATGTGTACATAG
TCATGAGGCCGTCGCAGGACAAGGACAACGTGGACGGAGGGGGCAAAGAA
GCAGAGCAGATGCCCGATGGAGACGTGCGTGCCCAGATCACGCTGCTGGG
GGTGAATCTCGTTCCTCTGCCGCGGGCGGAGGGCGGGGAGCTACAGGGAG
AAGGAAGGCGGGAGGAGAGGTGGGAGGTGAAGAGAATCAAGCAAAAAATC
GAGACGAATGAAGGCATTTATGTGCTCCAGGAAATATACGGCATTGCAGG
AACAGCCGCTGGCCCCTCCGATGATACAAAACGCGAAGTAGATGGGACAG
GCGATGCTCCTGCTGGCGCGGACAGGGAGGAAGAGACGGGCCGCGCGGAC
TGCGTGGTGTGTCTCACCAATAAGAGGGAGCTGGCGATTTTACCCTGCCG
GCATATGTGCGTCTGTCGGGATTGCGCCGCAGAATGCATCCAGAATCAAG
ATAGTAAATGCCCCATCTGTAGAAATCCGGCGCAGGCGCTCTTAAAGCTT
ACCCTGGAGGACAATGACCACCGTCGCTCTTCGTCCTCATCAGAAGGACT
TGTCTCCTAGGAGCAGCAGCTGTACACTCGTTTGAAGGGATGGAAAGCGC
CGGGAAACTTTCTGGGGACATTTTAAAGAAATGTGAAGTGTATGACATCA
AAGCCTGTCTTCGCTCTTCTTTCCATAAAATGTCATTTCCTTTTATTTGA
AAGCTCAATTGTTTTTGTTAGAAAGGCCTACGGCCCTTATTCGACGCCTG
GAATGAAATTCAGGGCCACATCGACAGCTCCGCAAGCCTCAAAACCGAAC
TCCAACCAAAGTAGTGAACAAATAAAGGAGTAAGGAAAAGCTACAGATGG
CATGGACAGCTGTGTGTGTGGAAGAATTTTCTGTCCACAGGAAGAGATGC
GAGTAAAGCAAAACTCGTGTGTGAGCCCGATTT
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protein sequence of rna5166

>rna5166-protein ID=rna5166-protein|Name=rna5166|organism=Nannochloropsis gaditana|type=polypeptide|length=297bp
MEAGVLQARKTTDVVSALTFVMAGAAAGRLLASLRETCLPLMTTEFKEDV
CLSILIYLVGYAALGGFSPLMPTKRKAWIMSVLCSLGMSLGSLPYVYRLV
YIHGFDTGKMVYADDRLSVFVMSFFMTFLVLDIVVGLRIYPSEISFLTGW
FHHSLYMCACLWAMIHQISISAVATMIMEVPTLVMALGRLDKSMRNDFLF
GSTFFATRIVYLGIYIYKLMCDVSPRVVVWPVCLPAMALHLFWFQGFIQQ
QMRLRTRSSEAGGSLWTLTYIFFVNIPFKWESLMWFWLHLEKTGGIS
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mRNA from alignment at CM002465.1:307047..308272-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5166 ID=rna5166|Name=rna5166|organism=Nannochloropsis gaditana|type=mRNA|length=1226bp|location=Sequence derived from alignment at CM002465.1:307047..308272- (Nannochloropsis gaditana)
ATGGAGGCAGGCGTGCTGCAGGCACGTGGGCCACTGCGTCGGAGGGGTTG
ATGGGGGTGTAGGAATGTGCGTGTATTAGAGTTTTATGTGGTAGAGTGTT
GTCAACTTTTGTTCCATTTTACGGCGCCCGACGATCCGGTCGACGTTTTT
CGTGTCGCTGCTTCCTTGAATCCAACGCCATTCTCCCTACGGTCCTGACA
TTGGAGTCCCGTCTCTATCGAACAGTATTCTTCATTCCCGTTTCCATTCT
ACAATACCTTGACTCCAGGCAAAACGACAGACGTGGTGTCGGCTCTGACT
TTTGTCATGGCGGGCGCCGCTGCCGGACGTCTCCTTGCGTCTCTGAGGGA
GACATGTCTGCCACTGATGACAACGGAATTTAAGGAGGACGTTTGCCTGT
CTATCCTTATCTATCTCGTGGGATACGCTGCGTTGGGAGGGTTCTCGCCT
TTGATGCCCACCAAACGGAAGGCCTGGATAATGAGTGTCCTTTGCTCGCT
GGGCATGTCTCTAGGATCCCTACCCTACGTGTACCGACTTGTCTACATCC
ACGGTTTCGACACGGGCAAGATGGTGTACGCGGACGATCGTCTCAGCGTC
TTCGTGATGTCATTTTTCATGACGTTTCTGGTTTTGGACATCGTGGTTGG
CCTTCGCATTTACCCCTCCGAGATAAGTTTTTTGACAGGATGGTTTCACC
ACAGCTTGTATATGTGCGCATGTCTGTGGGCGATGATCCATCAAATTAGC
ATCTCAGCCGTCGCAACCATGATTATGGAGGTGCCCACATTAGTCATGGC
TCTTGGGAGACTCGATAAATCCATGAGGAACGATTTCTTGTTTGGCTCAA
CTTTTTTTGCCACGCGTATTGTGTATCTAGGAATATATATATATAAGTTG
ATGTGCGATGTCTCCCCCAGGGTTGTCGTGTGGCCAGTATGTCTGCCTGC
TATGGCACTGCACTTATTTTGGTTTCAAGGTTTCATCCAGCAACAAATGC
GTTTAAGAACTCGTAGCTCAGAGGCAGGAGGTAGCGTGGGAGGGAAGGGG
GAGCAAGAGCAGGATGGAAAGGGCGGGAAAGCGGCGTAGAGCTGGAGAAT
GCTATTTCATGTTGACGATTTTAGTTGTGGACCCTCACATACATTTTCTT
TGTAAACATTCCTTTTAAATGGGAAAGCTTGATGTGGTTTTGGCTGCACT
TGGAGAAAACAGGCGGCATCAGCTGA
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Coding sequence (CDS) from alignment at CM002465.1:307047..308272-

>rna5166 ID=rna5166|Name=rna5166|organism=Nannochloropsis gaditana|type=CDS|length=2682bp|location=Sequence derived from alignment at CM002465.1:307047..308272- (Nannochloropsis gaditana)
TTGTGGACCCTCACATACATTTTCTTTGTAAACATTCCTTTTAAATGGGA
AAGCTTGATGTGGTTTTGGCTGCACTTGGAGAAAACAGGCGGCATCAGCT
GAGCAAAACGACAGACGTGGTGTCGGCTCTGACTTTTGTCATGGCGGGCG
CCGCTGCCGGACGTCTCCTTGCGTCTCTGAGGGAGACATGTCTGCCACTG
ATGACAACGGAATTTAAGGAGGACGTTTGCCTGTCTATCCTTATCTATCT
CGTGGGATACGCTGCGTTGGGAGGGTTCTCGCCTTTGATGCCCACCAAAC
GGAAGGCCTGGATAATGAGTGTCCTTTGCTCGCTGGGCATGTCTCTAGGA
TCCCTACCCTACGTGTACCGACTTGTCTACATCCACGGTTTCGACACGGG
CAAGATGGTGTACGCGGACGATCGTCTCAGCGTCTTCGTGATGTCATTTT
TCATGACGTTTCTGGTTTTGGACATCGTGGTTGGCCTTCGCATTTACCCC
TCCGAGATAAGTTTTTTGACAGGATGGTTTCACCACAGCTTGTATATGTG
CGCATGTCTGTGGGCGATGATCCATCAAATTAGCATCTCAGCCGTCGCAA
CCATGATTATGGAGGTGCCCACATTAGTCATGGCTCTTGGGAGACTCGAT
AAATCCATGAGGAACGATTTCTTGTTTGGCTCAACTTTTTTTGCCACGCG
TATTGTGTATCTAGGAATATATATATATAAGTTGATGTGCGATGTCTCCC
CCAGGGTTGTCGTGTGGCCAGTATGTCTGCCTGCTATGGCACTGCACTTA
TTTTGGTTTCAAGGTTTCATCCAGCAACAAATGCGTTTAAGAACTCGTAG
CTCAGAGGCAGGAGGTAGCATGGAGGCAGGCGTGCTGCAGGCACTTGTGG
ACCCTCACATACATTTTCTTTGTAAACATTCCTTTTAAATGGGAAAGCTT
GATGTGGTTTTGGCTGCACTTGGAGAAAACAGGCGGCATCAGCTGAGCAA
AACGACAGACGTGGTGTCGGCTCTGACTTTTGTCATGGCGGGCGCCGCTG
CCGGACGTCTCCTTGCGTCTCTGAGGGAGACATGTCTGCCACTGATGACA
ACGGAATTTAAGGAGGACGTTTGCCTGTCTATCCTTATCTATCTCGTGGG
ATACGCTGCGTTGGGAGGGTTCTCGCCTTTGATGCCCACCAAACGGAAGG
CCTGGATAATGAGTGTCCTTTGCTCGCTGGGCATGTCTCTAGGATCCCTA
CCCTACGTGTACCGACTTGTCTACATCCACGGTTTCGACACGGGCAAGAT
GGTGTACGCGGACGATCGTCTCAGCGTCTTCGTGATGTCATTTTTCATGA
CGTTTCTGGTTTTGGACATCGTGGTTGGCCTTCGCATTTACCCCTCCGAG
ATAAGTTTTTTGACAGGATGGTTTCACCACAGCTTGTATATGTGCGCATG
TCTGTGGGCGATGATCCATCAAATTAGCATCTCAGCCGTCGCAACCATGA
TTATGGAGGTGCCCACATTAGTCATGGCTCTTGGGAGACTCGATAAATCC
ATGAGGAACGATTTCTTGTTTGGCTCAACTTTTTTTGCCACGCGTATTGT
GTATCTAGGAATATATATATATAAGTTGATGTGCGATGTCTCCCCCAGGG
TTGTCGTGTGGCCAGTATGTCTGCCTGCTATGGCACTGCACTTATTTTGG
TTTCAAGGTTTCATCCAGCAACAAATGCGTTTAAGAACTCGTAGCTCAGA
GGCAGGAGGTAGCATGGAGGCAGGCGTGCTGCAGGCACTTGTGGACCCTC
ACATACATTTTCTTTGTAAACATTCCTTTTAAATGGGAAAGCTTGATGTG
GTTTTGGCTGCACTTGGAGAAAACAGGCGGCATCAGCTGAGCAAAACGAC
AGACGTGGTGTCGGCTCTGACTTTTGTCATGGCGGGCGCCGCTGCCGGAC
GTCTCCTTGCGTCTCTGAGGGAGACATGTCTGCCACTGATGACAACGGAA
TTTAAGGAGGACGTTTGCCTGTCTATCCTTATCTATCTCGTGGGATACGC
TGCGTTGGGAGGGTTCTCGCCTTTGATGCCCACCAAACGGAAGGCCTGGA
TAATGAGTGTCCTTTGCTCGCTGGGCATGTCTCTAGGATCCCTACCCTAC
GTGTACCGACTTGTCTACATCCACGGTTTCGACACGGGCAAGATGGTGTA
CGCGGACGATCGTCTCAGCGTCTTCGTGATGTCATTTTTCATGACGTTTC
TGGTTTTGGACATCGTGGTTGGCCTTCGCATTTACCCCTCCGAGATAAGT
TTTTTGACAGGATGGTTTCACCACAGCTTGTATATGTGCGCATGTCTGTG
GGCGATGATCCATCAAATTAGCATCTCAGCCGTCGCAACCATGATTATGG
AGGTGCCCACATTAGTCATGGCTCTTGGGAGACTCGATAAATCCATGAGG
AACGATTTCTTGTTTGGCTCAACTTTTTTTGCCACGCGTATTGTGTATCT
AGGAATATATATATATAAGTTGATGTGCGATGTCTCCCCCAGGGTTGTCG
TGTGGCCAGTATGTCTGCCTGCTATGGCACTGCACTTATTTTGGTTTCAA
GGTTTCATCCAGCAACAAATGCGTTTAAGAACTCGTAGCTCAGAGGCAGG
AGGTAGCATGGAGGCAGGCGTGCTGCAGGCAC
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Synonyms
Publications