rna5151, rna5151 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5151
Unique Name	rna5151
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3365
Alignment location	CM002465.1:270293..272131 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100032g1.268.mrna
Orig protein id	gnl\|cribi\|Naga_100032g1.268
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:270293..272131 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100032g1	gene4972	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25525.1	cds5139	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5151	rna5151-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:270293..272131-
coding sequence from alignment at CM002465.1:270293..272131-

mRNA sequence

>rna5151 ID=rna5151|Name=rna5151|organism=Nannochloropsis gaditana|type=mRNA|length=3365bp
ATGCAGGCAGGAGGGCCCCGGGCAGGGGCCCCGGAGGCGGGGGACGAGAG
CCGGCCATCCATCCCCCCAGGCGCCTCGCCGGACACCGAGGGCGGAAGGG
GAGGGCGGGGGACCAGGAGCAAGCTCGACTACCGCGTCACTTTCAAAGTG
GTCCTCCTGTACCCCCAGTTGAATTTCCGAAGCCAGCACGCGAACGGAAG
CTTTATCATCGCCGCTCAAGAGGCCTACATGGAAGGGCGGCAGCACGAGA
AGCTCTTCCGCCGTCGGTGCGAGCCCTTTTCGGGGCTGACACCAGCCCTG
GGCCCTGCCCGCCCTCCGGTCAAGCTCCTGGCTAAGGTGGAGCAGTGGCT
GCGTATCGAGAACATGCGTGCCTACGTGGTGCCCTTGGACGTGGAGGTAA
CTCGGGAGGTTCACTGGTTGGAAGTGGTGCCGGCCTCGGACGAGCCGGTG
TTGGGGGAGGAAGAGAAGCCCGGGGCGTCCACGAAACTGACGGCCATGAT
GGGGATGGTGGAAGCGGGAGGGGGCGGGGGACCGGGAGGAAAGAGAGAAA
GGGAGTCCAGTCGCAGTGCCTCCCCCTCAGCCTCGTTGCGATCGCTCTCG
CCCCTGGCGGCGGCGATGGGCATCGGCCGGGTGGGTTTTGGGAAAGCCTT
TGCGGGTAAGGGAGGAAAGAAGGGCGCCAGTAGCGAGACCAGCAGCCCTG
GCCACCGCTCCGACGCCCAGTCCACACACGTGGGCAATAGGAAGAGCAAC
AGCACCAGCGGCCGCGGGAAGCCGAGCTCGGCCCGGCCTGAGTACGCCTT
CCAAGGGAGCGCTGTAGTGCAGGAGGTGGTGAAAGACTTTGGGTTGACCT
TCGCCTCCATTGCCTTCAAGCCTGCGGCCCTGCCTAAGGCCGGGAGCCGC
GAGGTCTCGGCCTTTTCGCAGAGCTTGGAGGAGAGCGGTGGATCGCGCTG
CAACTCGAACGGGGAGAAAGTACGGCGCATTCGCATCTCTTCTGAAGAGA
CCGTGGCAAAGGTGCTATTGGATTTGCCTCAGTTGGACTGGAACCTGAAC
TCCCGGCAATTTTACATCACCCTGGATGTGATACGGAACGTCCTGCTGGC
CGCGCCGGTGCAGACGGAGGAAGAGGAAGCGGAGGAAAGGATCCGCCGGG
AGCAACAGGAAGCGAAGCGGATCGCGGAGGCCCGACAGCGAGTGGCAGCG
GTCGCGGGATTGAATCCAGGGGAGGAGAAAGGAGGCCTTGAGCTGGCCTT
GGAGCCTGAGCATTTGGATTTGGGAAGCAAAAGCGACCGTGACGTGCTGA
AGACGTTGGTGGAACAAACCTTGCAACGTCTCCTTCTCCCCACGCTGCAC
GAGACGAAGATGGTGCAGTACTGTGTGGGGGGAGGGACGTGGAAGGTGAA
GGCGGAGGAAGGGATGCTGACCAAGTACGACGCCTTGGAGATCGGGTTCA
CCGGCTTCAGCGGCCAGCATGTGTACTTCCACGACGGGTCGATGGACTCG
ACCGTGCAGGTGGAGAGTTTCTGGGTGCGCAACGTGATGCCGGGGCCGGA
CTCGGTCCTGTTCAAGGACGACGTGACCACGGTCATGAGCCCCGTCGTCC
GGGACAAGCAACCCTGCCAACGCTGTGGCGCCCCCTTTGAGGAGGAATCC
AACCGGGCCACGTCCTGCGTCTTTCATGGGTGCGCGGACGGCACGCCGGG
GGAGTTTCGTCTCTTGACAGAGGCGGAGATCGAAAGCCAGCACCGACGGG
ACTGTGCGGTGGAGGAAGGGGGGGAGGGCGGGGGGGATGCTGAGGGCCTG
GACGGGTCGGGTTGGCCTGTGGCGGGGACCGCACCTGCAAGGAGGGAAAG
AAGGGAGGCGCAGGCGTCGGGCTTTTCGGCAGAGACATTGGATTCCTCCG
GCCCGCCCTTGAGCGGCTTGCACCGTCACGCCAGCTACCAACGGCTACAG
GTGCTCCGCCCCACTACGGGTCGATGGACGTGTTGCCGGGCTACGTATGA
GACGGCGCCGGGGTGCAGGGCGCGGGCCCATGTCGCCAAGGAGGTCATGC
TTAGCGTGAGGGCCAAGAGCCACGCCCCTCTTTTCGTGGCGGGCTATGAG
GTGCACCCCTACCAGTTTATGGACGTGTCCATCTTCCCAGGGGCGGACTA
CAAGCTTACTTTCCAACTCACTCGCAACATCGTGGAACTCCTCCACGCTT
ACTTCCTCACGCAGGACGTGACGGGCCCCGTGCTGGCGGACGATGCCGCC
CAGACCACCGACCTTCTTTTCGGGAGGAGCGTTTTGGAGCAGAAGCACAA
GGCGGGGAAAGAGAAGAAGGGAACCTATCTCACCGACCGCTTTGCCAAGA
ATTTTATGGGGGGGGAAAAGCCTTCGTCTTCCGCTTCCCCCAGGGCATCC
ACGGCCTCTCCCCGCTCCTCTCCCCACAAGAGTTCTTCCGCTAGTCTTGT
TTCGAATACCAATACTACCGTAGCTAGCACTGCTAGTGGGGGCTCGGTGG
TCAAGGGTGATACGCCAAAGGAACCGGTCATTTACATGCGATATCTCCGG
TGGGGGGATTTGAATGTAAAACTCTCGGTCAACGGGTTTGCCCTAAAATT
CGACGGTTACCGAGCTTCTATTCCTGCTTTCGTCCAACAGGGAAAGATCT
TGTCGTGGAAACGTTTGATTCGCAAATTTGAGAAGCACGTCGTGTGGAGT
GTAACTACTTCCGCCGCTGCGTCCATGGTTTCAGGGGGTGGCAAAGGAAA
GGGAAATTATCAACTAGCCAATGATGGTGCAGGGGGGTGGGGAGAAAGAG
ATGGGAGTAAATTGAGCCCTAATGGAAATGGCGAAGATGAGAAGGAGCGG
GGTGTGAATACATTATTCAGCCCTCCACCGATGGAGGACCGAAGCAAGTT
GTTGTTTGGAAAGAGATAGAAGATAAAACATGGTGAAGAGCTGGACTTTC
GATGGAATGTACACGAATGGTGGGGCAGATGTGAGGATAAGTCTCCGAAA
ATGAGGACTACTTTTGACGTCGACGTTGATTGTAACTTTGGATAGAGCGT
AAACTGTGGATAAATGATACTACTTTCTGATGTATATTTGGGACCAGGTC
AGCAAACGAGGCCAAACCAACTCAACTATGCAAGAGCGATAGCCTCAATC
ATAAGAAGGAAATAATTTCGACTATATATCAAAGGATGAGTGTCCTTGAC
CCATAACGCTCTTTGATCTCTGAGCACTGATATTCCTGAGAGAAACTAGC
AAATCAATTTCGAAGAGCAAAGATTTACTAAGTAATCAGGAATGGAGGCA
GATTCACGCGACGGGCATATTGAAAGTACATCGGGCACAAAGGAAAAAGA
CAAATGTTGCAGATG

protein sequence of rna5151

>rna5151-protein ID=rna5151-protein|Name=rna5151|organism=Nannochloropsis gaditana|type=polypeptide|length=366bp
MFPFSFHFQAALYSFFQTKPFEIRVSGLHARKTLWSQAPASIPPSSPPPS
SSSIPLSASTHGNSSTSLLPAASSSSHPSQIDDTRAPGQPETSPAPPPKP
RKKASISEKPRDNSETPNQTSLSTLSMAVEATAGATGSVEAGEGRGRQWE
GAGSPVPSSGVGDQKKPSATSGTETPPASPGNKLGAFAPLTQRPTSWRRV
VWLGKLFKLRFEDVSVEATAPLPSCPPPSPSPPPRLTVSAGFASFTLAAT
HVVHPRPLLSVDLRLRAAWIRVIAPLVNRADAGTQKAPCLVMNVEGVASG
LVLEPGQARPASAYLAFQGTPCLHLDPSSLPPSLPPSPPPSPSPPPPRPP
NRLPAPASFPGHHFLA

mRNA from alignment at CM002465.1:270293..272131-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5151 ID=rna5151|Name=rna5151|organism=Nannochloropsis gaditana|type=mRNA|length=1839bp|location=Sequence derived from alignment at CM002465.1:270293..272131- (Nannochloropsis gaditana)
ACGACAGGACCTCAAGATCAACGCAAGTGCGCATCAGTGCGACCCGTGAA
CAACACTGTGATTCACAGGAAAACAATTTCACTTGCTGGCCGAGCGTTGT
GTGTGTACGCCACAACACGTGTTACGTCCAAAGGCTTGCGTGCCCGATGC
ATCCTAGAAGCTACAGTGTCAACATTGTCTAGACAAACAACCCCCGAAGG
ACTGGAAAATGGTCAGCTTCCTCCTCCGCCTGCTTCTGTGGGGGGGTTCC
TTCTTCCTCCGCTGGCTTTTGGTGCCAGTCTGTGTGGCAGGAATTATCGC
CCTTCATCCTCCTACCTTGGGCAATTTGTTATCGAAACTCATTCTTTTCG
CGGGTCGGAAGCTCAACAAGCCGAATAGCAAGCTTGAGCTGCGCCACTTC
AACGTCCAGGCAATCCACGTGTGGGGATGGCGAGTAGTAGCCCTGGAGGC
GACAGTCTTGGAGTCCCAAAGAGATGGCAGCATAGAGGCCGCTGTACTCT
TGCTCAAATCTCTAGAAGTCCGCCCCGCTATTAAGGTATGTGAGCACCGA
AAGCATGGAGGAAAGGGCGCGGACACGGAGGAGATAGATCGGGGCTCGCC
GGGTCTCGGGTGGCGTGCCTCCCTCCCTCTAATTCGCAACAATCAAAGCC
ATTTTATTGCGGTGCGGCTGAATGTTTCCATTTTCTTTCCACTTTCAGGC
GGCCCTGTACTCCTTCTTCCAGACGAAACCTTTCGAGATTCGCGTCTCAG
GCCTGCACGCCAGAAAAACCCTCTGGTCACAGGCCCCCGCCTCCATTCCT
CCCTCCTCCCCTCCCCCTTCCTCCTCCTCCATCCCCCTTTCAGCCAGCAC
CCACGGGAACTCTTCTACTTCTCTCCTGCCTGCAGCTTCTTCCTCGTCGC
ACCCCTCCCAGATCGATGACACACGAGCACCGGGGCAACCAGAGACCTCG
CCCGCCCCCCCCCCCAAGCCCCGGAAAAAGGCATCGATCTCGGAAAAACC
CCGAGATAACTCCGAAACTCCGAACCAGACAAGCCTTTCTACTCTTTCCA
TGGCTGTTGAAGCCACGGCGGGGGCCACTGGCTCCGTGGAGGCGGGGGAG
GGGCGTGGTCGACAGTGGGAGGGAGCGGGCTCCCCCGTACCCAGCTCCGG
TGTAGGAGACCAGAAAAAGCCGAGCGCGACGAGCGGCACTGAGACGCCTC
CCGCATCGCCGGGAAATAAATTGGGCGCCTTCGCCCCTCTGACGCAACGA
CCCACCTCTTGGCGACGGGTTGTGTGGCTGGGGAAGCTCTTCAAGCTCCG
CTTCGAGGACGTCTCTGTGGAGGCCACCGCCCCCCTCCCTTCCTGCCCCC
CTCCCTCCCCCTCCCCGCCCCCGCGCCTCACTGTCAGTGCGGGTTTTGCC
TCCTTCACCCTTGCGGCCACCCACGTCGTTCACCCTCGGCCCCTCCTCAG
CGTCGACCTCCGCCTGCGAGCTGCATGGATCCGGGTCATTGCCCCCCTCG
TTAACCGGGCGGACGCCGGCACGCAGAAGGCTCCCTGCCTCGTGATGAAT
GTGGAAGGCGTTGCGAGCGGGCTGGTCTTGGAGCCGGGCCAGGCGCGCCC
GGCCTCCGCCTACCTGGCTTTCCAAGGGACCCCCTGCCTCCACCTTGACC
CGTCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCCGCCACCATCCCCCTCT
CCCCCTCCCCCTCGCCCGCCGAACCGCCTCCCCGCCCCCGCGTCCTTCCC
TGGACATCACTTCCTTGCCTGAACGTGGGTTCTTCACACTCCCAGGGCTC
GACATCACCATCCTCGGACATGTCGAGGAAGGGAGGGAG

Coding sequence (CDS) from alignment at CM002465.1:270293..272131-

>rna5151 ID=rna5151|Name=rna5151|organism=Nannochloropsis gaditana|type=CDS|length=1101bp|location=Sequence derived from alignment at CM002465.1:270293..272131- (Nannochloropsis gaditana)
ATGTTTCCATTTTCTTTCCACTTTCAGGCGGCCCTGTACTCCTTCTTCCA
GACGAAACCTTTCGAGATTCGCGTCTCAGGCCTGCACGCCAGAAAAACCC
TCTGGTCACAGGCCCCCGCCTCCATTCCTCCCTCCTCCCCTCCCCCTTCC
TCCTCCTCCATCCCCCTTTCAGCCAGCACCCACGGGAACTCTTCTACTTC
TCTCCTGCCTGCAGCTTCTTCCTCGTCGCACCCCTCCCAGATCGATGACA
CACGAGCACCGGGGCAACCAGAGACCTCGCCCGCCCCCCCCCCCAAGCCC
CGGAAAAAGGCATCGATCTCGGAAAAACCCCGAGATAACTCCGAAACTCC
GAACCAGACAAGCCTTTCTACTCTTTCCATGGCTGTTGAAGCCACGGCGG
GGGCCACTGGCTCCGTGGAGGCGGGGGAGGGGCGTGGTCGACAGTGGGAG
GGAGCGGGCTCCCCCGTACCCAGCTCCGGTGTAGGAGACCAGAAAAAGCC
GAGCGCGACGAGCGGCACTGAGACGCCTCCCGCATCGCCGGGAAATAAAT
TGGGCGCCTTCGCCCCTCTGACGCAACGACCCACCTCTTGGCGACGGGTT
GTGTGGCTGGGGAAGCTCTTCAAGCTCCGCTTCGAGGACGTCTCTGTGGA
GGCCACCGCCCCCCTCCCTTCCTGCCCCCCTCCCTCCCCCTCCCCGCCCC
CGCGCCTCACTGTCAGTGCGGGTTTTGCCTCCTTCACCCTTGCGGCCACC
CACGTCGTTCACCCTCGGCCCCTCCTCAGCGTCGACCTCCGCCTGCGAGC
TGCATGGATCCGGGTCATTGCCCCCCTCGTTAACCGGGCGGACGCCGGCA
CGCAGAAGGCTCCCTGCCTCGTGATGAATGTGGAAGGCGTTGCGAGCGGG
CTGGTCTTGGAGCCGGGCCAGGCGCGCCCGGCCTCCGCCTACCTGGCTTT
CCAAGGGACCCCCTGCCTCCACCTTGACCCGTCCTCCCTCCCTCCTTCCC
TCCCTCCCTCCCCGCCACCATCCCCCTCTCCCCCTCCCCCTCGCCCGCCG
AACCGCCTCCCCGCCCCCGCGTCCTTCCCTGGACATCACTTCCTTGCCTG
A

Synonyms

Publications