rna515, rna515 (mRNA) Nannochloropsis gaditana

Overview
Namerna515
Unique Namerna515
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1879
Alignment locationCM002455.1:1288784..1290247 -

Link to JBrowse

Properties
Property NameValue
Producturoporphyrinogen decarboxylase
Orig transcript idgnl|cribi|Naga_100096g24.982.mrna
Orig protein idgnl|cribi|Naga_100096g24.982
GeneuroD
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1288784..1290247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
uroDgene496Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna515rna515-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30174.1cds515Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna515 ID=rna515|Name=rna515|organism=Nannochloropsis gaditana|type=mRNA|length=1879bp
TGTGCCGTCAGGATGCCTGACCGCGCCACTTTTCTCGTTCTTTTCTTCCT
CGGCACCACCGCGCTAAAGTTGCTCCTTCAGCCTTCATACCGCTCAACAG
ATTTCGAAGTGCACCGAAATTGGCTGGCTATCACGTACTCCTTGCCCATA
CACAAATGGTACTTCAATAATACATCTGAATGGACATTGGACTATCCACC
TTTCTTTGCATATTTTCAGTGGGTGCTTGCACAAACGGGGGCTGCTTTAA
ATTGGGACCCTGAAATGCTCAGAATTTCAGCCGCTCCCTACGCGAGCGAC
CCCACCGTGCTTTTTCAACGTCTGTCCGTGGCGGTGACAGATGTGCTGTT
GCTCGTTGGCATCCTGGTGTGGGTCCAGACCATCCCAGCGGAAACAGGCA
GCCCCTCGCGGATCGGCACGTTGGCCATGATGACTTTGGCCAGCGCGGGC
CTTTTGATGGTGGATCACATGCATTTTCAATATAATGGGATGCTCCTAGG
TATTCTTTTCCTCTCCATGGCGGCGCTTCGGAAGGGATGGATCTTGGCAG
GCGCGGGGCTCTTCGCCTCTCTCCTCATGTTCAAACACCTCTTCCTCTCG
TTGGCACCCGTATACTTCGTGTACCTCCTCTCCTCCTACTGCTACATACA
CCCGCCACCTCCCGGACAGGAGATCAAGTCCAGATTCCGCCCCGTCACTT
TTCTTCTCCTTGCGTCTACGGTCCTCGCTGTCTTTGCCGCCGCGCTTGGG
CCCCTCCTCCTCTCCCCCTCCTCCACCCCCTCCCTCCAGCTCGATCAACT
TGGCAGAAGGCTTTTCCCTTTCGGTCGCGGCCTCGTGCACGCCTACTGGG
CTCCCAACATCTGGGCCCTTTACTGTCTGGACGATCTAGGCTTGGCGGCC
CTTTCTCGGCGCCTCCACCTGCCCTTCCTCGACCGCTCTCGCCCTTCCTC
CGCTCCGACCTGGACCAGCGGGCTCGTGCAGGTCATCGAGCCCGAGGTCC
TGCCTCCTGTCTCCCCTGCCCTTGCCGCCGTTCTTACCCTTCTCAGCATG
GTCCCCGCCCTGGTGCTGGTGTGGAAAAGGCCGACGCCTCGGAGTTTTCT
TCTCGGTCTTTTCCAGACGGGTCTGTCGGCCTTTATGCTGGGGTACCACG
TACACGAAAAAGCGGTTTTGGTCCCGGTCATGGTGGGCGCACTCCTGGCT
TGCTCTTACAATCGATCCTCCTACGGCCGCCTCTTTTTTTGGCTGTCGAC
GATCGGGTACGCCTCCCTCCTGCCCTTGTTCCCCCCGCTCTCGCCCGACT
CTTTGACGGCCTTCTTGCTCATCCACCTCCACGCTCTGGGCTCCTGGTTC
GGACTTGGGAAGGAAGGGCTGCTGGGCGGGGAGGGGGGGAGGGAGGGGGC
CTTTTCCCTGCTAGAGTCGTTGTACCTGGCCGGCTTGGAGTGCATGCTTT
GGACGGTGGCAGTCATCCACCCTCTCTTCGCGCAAGACCGCTTTCCCTTC
GGGGGATGCCTGGTGTCCTCCGTCTACTGCAGTACGGGCATGGTGGGGGT
GTGGGCCGAGTCCTACCGGCTCCTGTGGCAGGAGCACCAAGAGGGGGGGG
GGGAGGGAGGGGAGGAGGGAGGGAAGGGCATAGGGGGGCGTGCAGAGAGG
ACGGAAAGCACATCGGGAAGTCGAGGCGGCCGGCGGCGGAAGGAGGAATG
AGGGTGGATTATGGCAGGGGAAAGGTCTAGGAAGGAAGTGGGCTGGTGTC
TAAGAGTCGGGAGGGGAAAGTATTATTGTTTTTAGGCCGGGGAAAACGAA
GGGAGCAGGGGGGACGCAAGGTGCTAAGGGGCATCCTATGTCGCAAAGGA
AAGCACAAGCATGAACCAGGCCCTAGACC
back to top

protein sequence of rna515

>rna515-protein ID=rna515-protein|Name=rna515|organism=Nannochloropsis gaditana|type=polypeptide|length=285bp
MEWSHPFPPPPHNSFSLFLSLPRPPSLPPPSLQTGPKIKPIRTWEAVKQM
HLMDCMQTCPFVHQTLSDLRKEVGNQATVLGFVGLPYTLATYIVEGQSSK
EYLEIKKMMFQEPALLQQMLSVLADNIGEYACFQIDAGAQVIQVFDSWAG
HLSPADYDIFAAPYQRQVIEKIKAKHPTVPIIIYINKSGALLERMAQSGA
DMVSLDWTVTMEEGRRRLGSEMGVQGNLDPAILYAPKEVIKERAEQILRE
GKGFKHVMNLGHGIEATTPEENAKFFIDTVKAWRY
back to top

mRNA from alignment at CM002455.1:1288784..1290247-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna515 ID=rna515|Name=rna515|organism=Nannochloropsis gaditana|type=mRNA|length=1464bp|location=Sequence derived from alignment at CM002455.1:1288784..1290247- (Nannochloropsis gaditana)
GCATGGAGTGGTCCCATCCCTTCCCGCCACCCCCTCATAATTCTTTCTCC
CTCTTCCTCTCTCTTCCTCGCCCGCCCTCCCTCCCTCCTCCTTCCCTCCA
GACGGGCCCCAAGATCAAGCCTATCCGCACCTGGGAGGCAGTCAAACAGA
TGCACCTGATGGATTGCATGCAGACATGTCCTTTCGTCCATCAGACGCTG
AGCGACCTTCGCAAAGAAGTTGGGAACCAGGCAACCGTCTTGGGCTTTGT
CGGCCTTCCTTACACCCTGGCCACCTACATTGTGGAAGGGCAGAGCTCAA
AGGAATACTTGGAGATCAAGAAAATGATGTTTCAGGAACCTGCGCTCTTG
CAGCAAATGCTGAGCGTTTTGGCCGACAACATCGGTACGACGGGGGAGGC
TGCCTGCCTGTGGATGGGAGGGAGGGGGGGCGGGCGGGAGGGCAGGAGGG
AGGGAGGGAGGGACGGAGGGACGGAGGGAGGGCGACTTTGAGAGAAAACT
TCTTTGTTGAGAGGCGATGGATAGCTCCTTGCATGCATACATGGATCGGT
CTTTTTTCGGGCTTTGTACGTGTCTTCCCCCCACACTCCTGTTGCCACAA
CCGGAACCTCAATCTTTTTCCTCTAACCCGTTCCCTCCCCCCGTTGCCCT
TCCTCCTCCCCTCGTTCCCCCCCTTGCTCCATCGACCCCCTCCAGGGGAA
TATGCCTGCTTCCAGATCGACGCCGGCGCGCAGGTGATCCAAGTCTTTGA
CTCATGGGCTGGCCACCTCTCCCCCGCCGACTACGACATCTTCGCCGCGC
CTTACCAGCGTCAAGTCATCGAAAAAATCAAGGCCAAACACCCCACGGTG
CCCATCATTATTTATATCAACAAGAGCGGGGCCCTTTTGGAAAGGATGGC
ACAGTCTGGCGCCGATATGGTCTCTTTGGATTGGACCGTGACCATGGAGG
AAGGCCGTCGGCGGTTGGGCAGTGAGATGGGGGTGCAGGGGAACCTGGAC
CCGGCGATTTTGTATGCGCCGAAAGAGGTGATCAAGGAGAGGGCCGAGCA
GATATTGCGGGAAGGGAAAGGGTTCAAGCATGTGATGAACCTGGGGCATG
GGATCGAAGCGACCACCCCGGAGGAGAACGCCAAGTTTTTCATCGACACG
GTCAAGGCATGGCGGTATTGAAGGAGAGGGCAGGGTGTAGGGGGGGAAAA
TGGAGGCTTGCGAAGGGGCGGGGGCGAGGACAGGTGGAAGTCCGGCAAAT
AATCGGATAGGGGTAAAGGGAGGAGGGAGGGCGGGGACGCGTCTCGGTGG
AGGGTGGGGGCGACGGGGTATGGACCGGCTCGTGTTTATGGAAATAAAAC
AATTGGCCAGGCGGTTCATGACAAGGGCGATATACTGGCATTGGGGTCTA
GGGCCTGGTTCATGCTTGTGCTTTCCTTTGCGACATAGGATGCCCCTTAG
CACCTTGCGTCCCC
back to top

Coding sequence (CDS) from alignment at CM002455.1:1288784..1290247-

>rna515 ID=rna515|Name=rna515|organism=Nannochloropsis gaditana|type=CDS|length=1716bp|location=Sequence derived from alignment at CM002455.1:1288784..1290247- (Nannochloropsis gaditana)
GGGAATATGCCTGCTTCCAGATCGACGCCGGCGCGCAGGTGATCCAAGTC
TTTGACTCATGGGCTGGCCACCTCTCCCCCGCCGACTACGACATCTTCGC
CGCGCCTTACCAGCGTCAAGTCATCGAAAAAATCAAGGCCAAACACCCCA
CGGTGCCCATCATTATTTATATCAACAAGAGCGGGGCCCTTTTGGAAAGG
ATGGCACAGTCTGGCGCCGATATGGTCTCTTTGGATTGGACCGTGACCAT
GGAGGAAGGCCGTCGGCGGTTGGGCAGTGAGATGGGGGTGCAGGGGAACC
TGGACCCGGCGATTTTGTATGCGCCGAAAGAGGTGATCAAGGAGAGGGCC
GAGCAGATATTGCGGGAAGGGAAAGGGTTCAAGCATGTGATGAACCTGGG
GCATGGGATCGAAGCGACCACCCCGGAGGAGAACGCCAAGTTTTTCATCG
ACACGGTCAAGGCATGGCGGTATTGAATGGAGTGGTCCCATCCCTTCCCG
CCACCCCCTCATAATTCTTTCTCCCTCTTCCTCTCTCTTCCTCGCCCGCC
CTCCCTCCCTCCTCCTTCCCTCCAGACGGGCCCCAAGATCAAGCCTATCC
GCACCTGGGAGGCAGTCAAACAGATGCACCTGATGGATTGCATGCAGACA
TGTCCTTTCGTCCATCAGACGCTGAGCGACCTTCGCAAAGAAGTTGGGAA
CCAGGCAACCGTCTTGGGCTTTGTCGGCCTTCCTTACACCCTGGCCACCT
ACATTGTGGAAGGGCAGAGCTCAAAGGAATACTTGGAGATCAAGAAAATG
ATGTTTCAGGAACCTGCGCTCTTGCAGCAAATGCTGAGCGTTTTGGCCGA
CAACATCGGGGAATATGCCTGCTTCCAGATCGACGCCGGCGCGCAGGTGA
TCCAAGTCTTTGACTCATGGGCTGGCCACCTCTCCCCCGCCGACTACGAC
ATCTTCGCCGCGCCTTACCAGCGTCAAGTCATCGAAAAAATCAAGGCCAA
ACACCCCACGGTGCCCATCATTATTTATATCAACAAGAGCGGGGCCCTTT
TGGAAAGGATGGCACAGTCTGGCGCCGATATGGTCTCTTTGGATTGGACC
GTGACCATGGAGGAAGGCCGTCGGCGGTTGGGCAGTGAGATGGGGGTGCA
GGGGAACCTGGACCCGGCGATTTTGTATGCGCCGAAAGAGGTGATCAAGG
AGAGGGCCGAGCAGATATTGCGGGAAGGGAAAGGGTTCAAGCATGTGATG
AACCTGGGGCATGGGATCGAAGCGACCACCCCGGAGGAGAACGCCAAGTT
TTTCATCGACACGGTCAAGGCATGGCGGTATTGAATGGAGTGGTCCCATC
CCTTCCCGCCACCCCCTCATAATTCTTTCTCCCTCTTCCTCTCTCTTCCT
CGCCCGCCCTCCCTCCCTCCTCCTTCCCTCCAGACGGGCCCCAAGATCAA
GCCTATCCGCACCTGGGAGGCAGTCAAACAGATGCACCTGATGGATTGCA
TGCAGACATGTCCTTTCGTCCATCAGACGCTGAGCGACCTTCGCAAAGAA
GTTGGGAACCAGGCAACCGTCTTGGGCTTTGTCGGCCTTCCTTACACCCT
GGCCACCTACATTGTGGAAGGGCAGAGCTCAAAGGAATACTTGGAGATCA
AGAAAATGATGTTTCAGGAACCTGCGCTCTTGCAGCAAATGCTGAGCGTT
TTGGCCGACAACATCG
back to top
Synonyms
Publications