rna5147, rna5147 (mRNA) Nannochloropsis gaditana

Overview
Namerna5147
Unique Namerna5147
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1680
Alignment locationCM002465.1:251036..252000 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100232g5.7109.mrna
Orig protein idgnl|cribi|Naga_100232g5.7109
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:251036..252000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100232g5gene4968Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5147rna5147-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25541.1cds5135Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5147 ID=rna5147|Name=rna5147|organism=Nannochloropsis gaditana|type=mRNA|length=1680bp
ATGAAGCGTTCCAACGAGCGAGGGCAATTGAGCAAGGAGGAGTACGAGCG
CGACGAGGAGGAGTACGGGGAAGGTGGTGGGGCTGACACATTTCGCAAGG
CGGACGAGAGCGTTCTGAAAACGCGCAAGATCGTCAAAGCCTCGCGCCGA
TTCTCTGGAGGGGAGGGTTCGTTGTCCTCGGCAGGATCGTCTGCGCCTGC
CCGGGGATCCCAGCTCCCTGCTTCCAACCCCTTTGCTGGGTTCAGCTTCG
CGAAGACCGCATCCAGCAGCAGCGGCAGCAGCTCTGGCGGTGGCAATACC
AACACCATGACGTCCCAGGTTGGCCTCGGTGGACCTTCAAGCTCACTGTC
GATGGGAGCCAGGCCTAGTGAGAATGCTTTTTCCGCAGACGCCCCTTCTT
TTCCTTCCTCCCTTGGCCTCCAAAACGGGCAGGGAAGCACCAAGGCCTCT
TTGTCCTCCCTGGCCGATCCCTTCACACCCCTCGCCTCGTCTTCCGCTTC
CTCCTCCTCCTGGAAACCACCATCCATGCAAGGCCCTCTCTTTTCCTCGT
TTCCCCACGCGGATGCGCCCAACCCATCCCCATGGTCCACGGCCGCCCAG
CCTTCCTCCGCCTCCTCCGGCCTGCCCGCCCTTGCCCCTCGCTCCTCAGT
CCCGGCTGCCGGCGACGGCGGTGGAAGGTTGAAAGGCAGCCTGGGTTCCA
CTGGGCCTCCCCTTGCCCGCGAGGAGGGCGATCATGGGGAGGGTCGTCGC
CTGCAAGGAGAGCACGAGCACCGTCCCTTCCAGGCCGGGCAGCTCGAACC
GGCGCACCCGAGGCCGCAGTCAGGACTAGGACAGGCAAAGGATCCATGCC
TAAACGGTGGCGGGAGGCAGCGAATCCCGCACAGTTACAAGACACGCATG
ACCCAGCTGAACCGTGGATTCGCCGCCTGGGCCTCCCAGCAGATCCAGGA
AAATCCTTTCTCTGTGTGGGTGGAAGGAGTGCGGGACTATGTAAAATTTG
CACAGGCCATTGCTTTCAAGTATGGGGAGGGGTCTGAGGGCCCCACTTGG
GTAGCTCCACACGCAGCGCAAGAGCAGCCGCAGCAAGCGGGGCGGCTGGC
TCCCCCTCCCACTTCTTTTCGGTCTGCACCCGTACTGCCAACCTCCTTCG
ATGCAACGTCCAACGCCGAAGCGGAAGGAAGGAAAGGGGCAGGAGGGGGC
GAAGAGGGGGAAGACGCGGCCCGTGCCCAATCCTACCCTCCGAGTGCGGG
GGCGGGGGGGGGCGAGGGGGGCGGGGAGGAAGAGGACGCAATGCCCTTGC
TGGCGCCTGATAAGGCAGTAAAGCAGAAAAAAGACCCCCACGAGGTGTTC
GAAAAGGATCCTGTGCGGGTGTATCGGCTCGACAAAGAGAGCAAGACCTG
GGTGGATATGGGGAAAGGCTCTCTGGGTCTGTATCGGGACCCTGCCGCCA
AGAAACAATGGCTGGCTGTGCGCAACATCACCGGTAAGGTAGTCCTTTCT
TGTGCGCTTACCCCTCCCATGTCTTTCAGCACCATGGAGAAGGCGAGCAG
CGTGGCCTTCGCCTGCAAGCCCGTGCTCGACACCACGGCCGCACAGGAAA
TGATGACATTGAGGATCAAGGTCAAGGATGGCCTGGGGGAGCTCGTGAAG
AAAATGAACGAACTCAAGGATGGGAAGTAG
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protein sequence of rna5147

>rna5147-protein ID=rna5147-protein|Name=rna5147|organism=Nannochloropsis gaditana|type=polypeptide|length=78bp
MPREKVGPGAFLITAIQRASALGEDSGRSGHPLARGFPFDPKQGIIQPSV
KLSLCTEPNHTLLIQRLGRNCALCLRIA
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mRNA from alignment at CM002465.1:251036..252000-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5147 ID=rna5147|Name=rna5147|organism=Nannochloropsis gaditana|type=mRNA|length=965bp|location=Sequence derived from alignment at CM002465.1:251036..252000- (Nannochloropsis gaditana)
ATGCCGCGAGAAAGTGAAAGGAGACCAGAAATATGACGTGCAAGGGAGAG
CCTTGGAGGCCTTCACCCACGTCTGTACAGCCCAATATGAGAAGCGCAGT
GATCTAGACGTGCTAGAACGCCAACAATACTCTATCTCTTGTTATGCGCG
TATACTTTGATGCACACGATCCCGTCAAGGTAGTGGTCTCGGTCCACTGC
GCAGAAACCCTGTAACCCTTTCGGGGATACGAAAGTATATCTAATGACGG
TATTATCAGATCCTTTAAAGGCCAATGCAACGCATCGCGTTCCCCCTGTG
CCACTTTGCAATTCGGGAGACGTTGTAACACCCAAGCAGTTCGTGGTCAC
GGCTAGAAGAAGGCTGTAAGTGAAGCCACTTCGTCTTCAGCTTGAAGCAC
AAGAAAGGCCACATCATCATGTTCTCATCGTCTCACCCTCTTTGCCAAAG
ACATTTGTGCGCTTACCACCTGGCACGCCACCCGTTACGAATGAGAACGG
TGGATCTACACGTGCAGAGGCTACACATGTATCCTTAGTGGGAGCATTTG
CGTGCTTGTGGCCGCGTCAAAGCGTCGCGTGTCGTGCTAGCTTTCTCTTT
CGACCCAGAGCCTCGCCCACTGCCGCTCGATCACGGAGGCCTTCCCCCCC
CCCCATGTCCGTGTCCACTACAGTCGACATACCCCTGTCCTCTCCTCCTC
CCTTTCCCTTAAAACAGGGAATTGAAGCATACGTGCCTAAGAAGTGGGGC
CGGGAGCGTTTCTCATTACCGCAATTCAACGCGCTTCGGCCCTCGGAGAG
GACTCTGGACGATCAGGCCATCCGTTAGCGAGAGGCTTCCCCTTCGACCC
TAAGCAGGGGATAATACAGCCATCAGTCAAGCTTTCGTTGTGCACAGAGC
CCAACCACACGCTTCTTATTCAAAGGTTGGGTCGAAATTGTGCCTTGTGT
CTGCGCATTGCTTAA
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Coding sequence (CDS) from alignment at CM002465.1:251036..252000-

>rna5147 ID=rna5147|Name=rna5147|organism=Nannochloropsis gaditana|type=CDS|length=474bp|location=Sequence derived from alignment at CM002465.1:251036..252000- (Nannochloropsis gaditana)
AAGTGGGGCCGGGAGCGTTTCTCATTACCGCAATTCAACGCGCTTCGGCC
CTCGGAGAGGACTCTGGACGATCAGGCCATCCGTTAGCGAGAGGCTTCCC
CTTCGACCCTAAGCAGGGGATAATACAGCCATCAGTCAAGCTTTCGTTGT
GCACAGAGCCCAACCACACGCTTCTTATTCAAAGGTTGGGTCGAAATTGT
GCCTTGTGTCTGCGCATTGCTTAAATGCCGCGAGAAAAAGTGGGGCCGGG
AGCGTTTCTCATTACCGCAATTCAACGCGCTTCGGCCCTCGGAGAGGACT
CTGGACGATCAGGCCATCCGTTAGCGAGAGGCTTCCCCTTCGACCCTAAG
CAGGGGATAATACAGCCATCAGTCAAGCTTTCGTTGTGCACAGAGCCCAA
CCACACGCTTCTTATTCAAAGGTTGGGTCGAAATTGTGCCTTGTGTCTGC
GCATTGCTTAAATGCCGCGAGAAA
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Synonyms
Publications