rna5143, rna5143 (mRNA) Nannochloropsis gaditana

Overview
Namerna5143
Unique Namerna5143
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1218
Alignment locationCM002465.1:242710..244235 +

Link to JBrowse

Properties
Property NameValue
Productribosome recycling factor
Orig transcript idgnl|cribi|Naga_100232g9.7111.mrna
Orig protein idgnl|cribi|Naga_100232g9.7111
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:242710..244235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100232g9gene4964Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5143rna5143-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25543.1cds5131Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5143 ID=rna5143|Name=rna5143|organism=Nannochloropsis gaditana|type=mRNA|length=1218bp
CAAGATCGATGTATGAGCACAATTCACAATCCTGGCTGTTTTAATAAATA
TTGTCGTGTCAGTGGTCTCTAGTCGATGCATGTACCCAGTTTTTCGTCAG
TCAACCTCCCCTGCTTGCTTCCCTCTGAACCAGTTTACTTTCTGAGCAAG
GGACATGCCGCCTCGTGCTAGCCCATAAATGTCACAGCAAAGACGCTCTG
TGGCTCCCATTTTTCAAGAATCACGACTTCGGTAGGCCTTCAATATGTCC
GTACCACCTGCGTCGGGCGGAGAGCCCAACTCGGACGCGTTTCGCTCCAG
CTTGTTGAGTGATCAATTCTACCGACGGCTTATGCCCTTCCAACGAGATG
GCATTGCTTTTGGAATCAAAGCTCAAGGCCGCGTGCTGCTGGCTGATGAA
ATGGGCCTGGGAAAAACGCTTCAAGCGATCGGGATCATGCTTCATTTCCA
CACGGACTTTCCGGCTCTAGTGGTCTTGCCTTCCTCTGTTAAATTCAGCT
GGGCGAACGAATTGGAGCGATGGACAAAACTCAACCCCAAGAGGATCAAA
ATGGTGCGGTCTCGTGCGGACGTGGAGGCCTTACGCGACGCGGACGTGGT
GCTTGTGACCTACGGCATGCTCTCTGCGACCGCGCCTGTGGTGGAAGCGT
TACAGAGGGCCCGGCCCCATGTCGTGGTATTGGACGAGTCGCACTCCATC
AAGAACCAGAACTCGCTGCGAAACCAGCTGCTGTCGCCGATCTTAAAACA
GGCCAAGCGCGTCATCCTCCTTTCAGGCACGCCCGCCTTAGCGCGACCTG
TGGAGCTTTACCCTCAGCTCTCTGCCATCGCCCCTTCTCTCTTCGGGACC
TACCTAGAGTACGCCCGCCGGTTCTGCAACGCCCACCAGGGACGCTTTGG
GTGGGACGTCAGCGGTGCCTCCAACGTGGCAGAATTGCACGTCAAGCTTC
AGGTGAGTGACGTGTCATTACTTGGTCGGCCACGGCCGGGGCGCTTTTCC
TCTTCCAGGTTCCTCCGTGTCGGCTTGGCTTTCTGGGAACCCCCTCGGCG
AGCCCTCGACACGGTGAAAGGGGTCGTTCAACAAGCCGGGCGGCGCAGCG
ATCGGAGTAACGAGTGTCCTCTCCTTTGTCTGTGCAGCGTCTATTGATCT
TCAGGGTCTCGTGGAGGTGTCAGGGTTGGGTTTGGACCTCTTCGTTCGTT
CCACTCCTTCCTTCCCCC
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protein sequence of rna5143

>rna5143-protein ID=rna5143-protein|Name=rna5143|organism=Nannochloropsis gaditana|type=polypeptide|length=293bp
MSSFSSGICMRHLSRRLPSPRTKSIMNRALVRAFGGQSNCISRTVSLLQP
PVISGLPSQAVRNFSKKDRRKGSANAGGSGSGSGTAAPSRHTAPHHHHAP
SIGGVTHNEKPLVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLH
VQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNP
RVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKG
EGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV
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mRNA from alignment at CM002465.1:242710..244235+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5143 ID=rna5143|Name=rna5143|organism=Nannochloropsis gaditana|type=mRNA|length=1526bp|location=Sequence derived from alignment at CM002465.1:242710..244235+ (Nannochloropsis gaditana)
GCCCCTGAAACAGGTCTTATTACCTCATCTCAGTCCAAGcacgcccttcc
cgtccacAGTCTTCTTTCGAGAAATTTTTGGCTACATCAGCTAGCGAAAA
AGGCATTTGAACGTCTCATGTCATCGTTTTCAAGTGGTATTTGCATGCGG
CACCTCTCTAGAAGGCTGCCTTCCCCTAGAACCAAGAGCATCATGAACCG
AGCATTAGTCAGGGCATTCGGAGGGCAAAGCAATTGTATTAGCAGGACAG
TATCTCTTCTTCAACCACCTGTCATATCGGGGCTACCATCACAAGCCGTC
CGTAACTTCAGCAAAAAAGGTAGGCGAAGGGAGCACTGTGCTGTGGGTAT
CTGCCAGCGCTTTCCCAGGATTGAGAGTATTGAAATGACGTCGACATAAC
GTGCCATTTAAGTTTACCGTCGTGTTGAGGACCAAAGGATCGCATGCGTG
TCCGTAAAAAGGGCGAACGAGGGATGGGAATTCAGAGCTCCGTCGTCCTT
AccataacctcccccccccttaatGTCCAATGAAGGCTTCCCTTCGGGTC
GAAGTCTTTACTGTATATCTCTTTGTTGGCGCGcgcttcttccacctctc
tGTTGTACCCATTTCTATTAAACCCCACAAAACCAGACCGACGAAAAGGC
AGCGCCAATGCTGGCGGCTCTGGGTCCGGCTCGGGGACGGCCGCACCGTC
ACGCCACACTGCaccgcaccaccaccacgccccGTCCATCGGCGGCGTGA
CACATAACGAAAAGCCCTTGGTCGACCTGGACAAGCTGCAATCGAAAATG
GAGCGGGTGCTGCGAGGTTTGGAAAAAGAGTTCTCGGGCGTGCGGGGGGG
ACGGCCGGACGCGGGGATGTTTGACCACCTCCACGTGCAAGCCTATGGGA
AAGCGACGCCTCTTTCCGACGTTGCTCAGGTCACGATCAAGAGCCCGACG
CTGGCTGTCATCCATGTCTACGACCCGGACATCCTCCATCCGGTCCACGA
AGCGGTCCAAGCCAGCAAGCTCGAGCTGAATCCCCGTGTGGACGGAAACG
TGGTGAATGTCCCACTGCCCAAACCGTCCGCGGAAATGCGGCAAGGATAC
GTGAAACTGGTGAGTCAATGCACGGAGACGGCCCGGCAAAACCTTCGGAA
GATTCGGCGGGAGGGTATGGACCGGttgaaaggggaagggaaggagggtg
tgggggaggacgacgtccGCAGGAGCTCCAAGTTGATCGAAAGCATGACG
GAGGAGTGGGTCAAGAGGGTCGGGGAGGCTctggagaaaaagaagaagga
gatcaTGACGGTATAGACCCAGGAGCGTGTGGCAGCCACGTGGACCGAGA
CGGCGGGTGAAGCTCGTCTGTGCGGCCATTTGAATGCATGGACTGACCGT
CGCcagggaaaagaaagtctAACAATTGCAACAGGATAGCTGATGATAGC
AACCGCGTCAAGATTAGGCCGATGCCTGTCATGGGTACGACACGGCTCAG
CCGTCTTGGTGACATTTTTCTTTCGC
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Coding sequence (CDS) from alignment at CM002465.1:242710..244235+

>rna5143 ID=rna5143|Name=rna5143|organism=Nannochloropsis gaditana|type=CDS|length=1764bp|location=Sequence derived from alignment at CM002465.1:242710..244235+ (Nannochloropsis gaditana)
ATGTCATCGTTTTCAAGTGGTATTTGCATGCGGCACCTCTCTAGAAGGCT
GCCTTCCCCTAGAACCAAGAGCATCATGAACCGAGCATTAGTCAGGGCAT
TCGGAGGGCAAAGCAATTGTATTAGCAGGACAGTATCTCTTCTTCAACCA
CCTGTCATATCGGGGCTACCATCACAAGCCGTCCGTAACTTCAGCAAAAA
AGACCGACGAAAAGGCAGCGCCAATGCTGGCGGCTCTGGGTCCGGCTCGG
GGACGGCCGCACCGTCACGCCACACTGCaccgcaccaccaccacgccccG
TCCATCGGCGGCGTGACACATAACGAAAAGCCCTTGGTCGACCTGGACAA
GCTGCAATCGAAAATGGAGCGGGTGCTGCGAGGTTTGGAAAAAGAGTTCT
CGGGCGTGCGGGGGGGACGGCCGGACGCGGGGATGTTTGACCACCTCCAC
GTGCAAGCCTATGGGAAAGCGACGCCTCTTTCCGACGTTGCTCAGGTCAC
GATCAAGAGCCCGACGCTGGCTGTCATCCATGTCTACGACCCGGACATCC
TCCATCCGGTCCACGAAGCGGTCCAAGCCAGCAAGCTCGAGCTGAATCCC
CGTGTGGACGGAAACGTGGTGAATGTCCCACTGCCCAAACCGTCCGCGGA
AATGCGGCAAGGATACGTGAAACTGGTGAGTCAATGCACGGAGACGGCCC
GGCAAAACCTTCGGAAGATTCGGCGGGAGGGTATGGACCGGttgaaaggg
gaagggaaggagggtgtgggggaggacgacgtccGCAGGAGCTCCAAGTT
GATCGAAAGCATGACGGAGGAGTGGGTCAAGAGGGTCGGGGAGGCTctgg
agaaaaagaagaaggagatcaTGACGGTATAGATGTCATCGTTTTCAAGT
GGTATTTGCATGCGGCACCTCTCTAGAAGGCTGCCTTCCCCTAGAACCAA
GAGCATCATGAACCGAGCATTAGTCAGGGCATTCGGAGGGCAAAGCAATT
GTATTAGCAGGACAGTATCTCTTCTTCAACCACCTGTCATATCGGGGCTA
CCATCACAAGCCGTCCGTAACTTCAGCAAAAAAGACCGACGAAAAGGCAG
CGCCAATGCTGGCGGCTCTGGGTCCGGCTCGGGGACGGCCGCACCGTCAC
GCCACACTGCaccgcaccaccaccacgccccGTCCATCGGCGGCGTGACA
CATAACGAAAAGCCCTTGGTCGACCTGGACAAGCTGCAATCGAAAATGGA
GCGGGTGCTGCGAGGTTTGGAAAAAGAGTTCTCGGGCGTGCGGGGGGGAC
GGCCGGACGCGGGGATGTTTGACCACCTCCACGTGCAAGCCTATGGGAAA
GCGACGCCTCTTTCCGACGTTGCTCAGGTCACGATCAAGAGCCCGACGCT
GGCTGTCATCCATGTCTACGACCCGGACATCCTCCATCCGGTCCACGAAG
CGGTCCAAGCCAGCAAGCTCGAGCTGAATCCCCGTGTGGACGGAAACGTG
GTGAATGTCCCACTGCCCAAACCGTCCGCGGAAATGCGGCAAGGATACGT
GAAACTGGTGAGTCAATGCACGGAGACGGCCCGGCAAAACCTTCGGAAGA
TTCGGCGGGAGGGTATGGACCGGttgaaaggggaagggaaggagggtgtg
ggggaggacgacgtccGCAGGAGCTCCAAGTTGATCGAAAGCATGACGGA
GGAGTGGGTCAAGAGGGTCGGGGAGGCTctggagaaaaagaagaaggaga
tcaTGACGGTATAG
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Synonyms
Publications