EWM25543.1, cds5131 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25543.1 vs. NCBI_GenBank
Match: gi|585107313|gb|EWM25543.1| (ribosome recycling factor [Nannochloropsis gaditana]) HSP 1 Score: 600.127 bits (1546), Expect = 0.000e+0 Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 0
Query: 1 MSSFSSGICMRHLSRRLPSPRTKSIMNRALVRAFGGQSNCISRTVSLLQPPVISGLPSQAVRNFSKKDRRKGSANAGGSGSGSGTAAPSRHTAPHHHHAPSIGGVTHNEKPLVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
MSSFSSGICMRHLSRRLPSPRTKSIMNRALVRAFGGQSNCISRTVSLLQPPVISGLPSQAVRNFSKKDRRKGSANAGGSGSGSGTAAPSRHTAPHHHHAPSIGGVTHNEKPLVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV
Sbjct: 1 MSSFSSGICMRHLSRRLPSPRTKSIMNRALVRAFGGQSNCISRTVSLLQPPVISGLPSQAVRNFSKKDRRKGSANAGGSGSGSGTAAPSRHTAPHHHHAPSIGGVTHNEKPLVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
BLAST of EWM25543.1 vs. NCBI_GenBank
Match: gi|553179949|ref|XP_005852792.1| (ribosome recycling factor [Nannochloropsis gaditana CCMP526] >gi|422295738|gb|EKU23037.1| ribosome recycling factor [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 598.586 bits (1542), Expect = 0.000e+0 Identity = 292/293 (99.66%), Postives = 293/293 (100.00%), Query Frame = 0
Query: 1 MSSFSSGICMRHLSRRLPSPRTKSIMNRALVRAFGGQSNCISRTVSLLQPPVISGLPSQAVRNFSKKDRRKGSANAGGSGSGSGTAAPSRHTAPHHHHAPSIGGVTHNEKPLVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
MSSFSSGICMRHLSRRLPSPRTKSIMNRALVRAFGGQSNCISRTVSLLQPPVISGLPSQAVRNFSKKDRRKGSANAGGSGSGSGTAAPSRHTAPHHHHAPSIGGVTHNE+PLVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV
Sbjct: 1 MSSFSSGICMRHLSRRLPSPRTKSIMNRALVRAFGGQSNCISRTVSLLQPPVISGLPSQAVRNFSKKDRRKGSANAGGSGSGSGTAAPSRHTAPHHHHAPSIGGVTHNEQPLVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
BLAST of EWM25543.1 vs. NCBI_GenBank
Match: gi|1097518775|emb|SFQ52810.1| (ribosome recycling factor [Roseivivax halotolerans]) HSP 1 Score: 141.739 bits (356), Expect = 7.284e-38 Identity = 64/181 (35.36%), Postives = 117/181 (64.64%), Query Frame = 0
Query: 113 VDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
+D D L+ +M+ + L EF+ +R GR A M + + V+AYG+ TP++ V V + P + I+V+D +++ V +A++ S L +NP+++G ++ +P+P+ + E R+ K+ Q E AR ++R +RR+GMD++K +G+ EDD + ++ +T++++KRV EALE K++EIM V
Sbjct: 7 LDTDDLKRRMDGAMSNLRTEFASLRTGRASASMLEPVQVEAYGQMTPINQVGTVNVPEPRMVTINVWDKSLVNKVDKAIRESGLGINPQMNGTIIMLPIPELNEERRRELTKVAGQYAENARVSVRNVRRDGMDQIKKAKNDGMSEDDQKFWETEVQDLTDDYIKRVDEALETKQQEIMQV 187
BLAST of EWM25543.1 vs. NCBI_GenBank
Match: gi|1213277623|ref|WP_088663982.1| (ribosome recycling factor [Roseovarius sp. 22II1-1F6A] >gi|1212231264|gb|OWU68206.1| ribosome-recycling factor [Roseovarius sp. 22II1-1F6A]) HSP 1 Score: 141.354 bits (355), Expect = 1.038e-37 Identity = 67/181 (37.02%), Postives = 114/181 (62.98%), Query Frame = 0
Query: 113 VDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
+DLD L+ +M+ + L+ EF +R GR A M D + V AYG+ TPL+ V + + P + I+V+D +++ V +A++ S L +NP VDG V+ +P+P+ + E R+ K+ +Q +E+AR +R +RR+GMD LK +G+ EDD + S ++++T+E++ + LE K+ EIM V
Sbjct: 7 LDLDDLKRRMDGAMAALKTEFHTLRTGRAAATMVDPITVDAYGQITPLNQVGTINVPEPRMLTINVWDKSLINKVEKAIRESGLGINPVVDGTVIRLPIPELNEERRREMTKIAAQYSESARVAVRNVRRDGMDILKKAKNDGLSEDDFKIWSDEVQTLTDEYIASIDSTLEAKQAEIMQV 187
BLAST of EWM25543.1 vs. NCBI_GenBank
Match: gi|1119858414|ref|WP_072748366.1| (ribosome recycling factor [Pleomorphobacterium xiamenense] >gi|1094341118|emb|SET84400.1| ribosome recycling factor [Pleomorphobacterium xiamenense] >gi|1109828144|emb|SHN76474.1| ribosome recycling factor [Pleomorphobacterium xiamenense]) HSP 1 Score: 140.584 bits (353), Expect = 1.892e-37 Identity = 70/176 (39.77%), Postives = 110/176 (62.50%), Query Frame = 0
Query: 118 LQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
LQ +M+ L L+ EF+ +R GR A M D++ V AYG TP++ VA V + P + I+V+D ++ V +A++AS L +NP VDG ++ +P+P+ + E R+ K+ Q E AR +R +RR+GMD +K G+ EDD + S I+SMT++ + R+ E LE+K+ EIM V
Sbjct: 12 LQRRMDGALAALKAEFASLRTGRASASMLDNILVDAYGAPTPINQVATVNVPEPRMITINVWDKSLVGKVEKAIRASGLGINPVVDGTILRLPIPELNEERRRELAKVAGQYAEQARIAVRNVRRDGMDMVKKAKAAGMSEDDQKMWSDEIQSMTDKTIARIDELLERKQAEIMQV 187
BLAST of EWM25543.1 vs. NCBI_GenBank
Match: gi|1183627514|ref|WP_084862043.1| (ribosome recycling factor [Rhodobacteraceae bacterium WDS1C4]) HSP 1 Score: 140.198 bits (352), Expect = 2.754e-37 Identity = 64/182 (35.16%), Postives = 117/182 (64.29%), Query Frame = 0
Query: 112 LVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
++D D L +ME + L EF+ +R GR A M + + V+AYG+ TP++ V V + P + ++V+D +++ V +A++ S L +NP+++G ++ +P+P+ + E R+ K+ Q E AR ++R +RR+GMDR+K +G+ EDD + + ++ MT++++K+V +ALE K+ EIM V
Sbjct: 6 ILDTDDLTRRMEGAMSNLRTEFASLRTGRASASMLEPVQVEAYGQMTPINQVGTVNVPEPRMVTVNVWDKSMVNKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELGKVAGQYAENARVSIRNVRRDGMDRIKKAKADGLSEDDQKFWEQEVQEMTDKYIKQVDDALEHKQAEIMQV 187
BLAST of EWM25543.1 vs. NCBI_GenBank
Match: gi|1120259672|ref|WP_073126088.1| (ribosome recycling factor [Maribius salinus] >gi|1109916165|emb|SHI45030.1| ribosome recycling factor [Maribius salinus]) HSP 1 Score: 138.658 bits (348), Expect = 9.052e-37 Identity = 66/182 (36.26%), Postives = 112/182 (61.54%), Query Frame = 0
Query: 112 LVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
++D D LQ +M+ + L EF +R GR A M + + V+AYG+ATP++ V V + P L I+V+D ++ V +A++ S L +NP+++G ++ +P+P+ + E R+ K+ Q E AR +R +RR+GMD++K + + EDD + ++ MT ++K+V EALE K+ EIM V
Sbjct: 6 MLDTDDLQRRMDGAMANLRSEFGSLRTGRASASMLEPVMVEAYGQATPINQVGTVNVPEPRLVTINVWDKSLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRDLSKVAGQYAENARVAIRNVRRDGMDQIKKAKADNLSEDDQKFWEAEVQEMTNTYIKKVDEALESKQAEIMQV 187
BLAST of EWM25543.1 vs. NCBI_GenBank
Match: gi|1057006373|ref|WP_068417889.1| (ribosome recycling factor [Labrenzia sp. OB1] >gi|1020949803|gb|KZM48001.1| ribosome-recycling factor [Labrenzia sp. OB1]) HSP 1 Score: 138.272 bits (347), Expect = 1.209e-36 Identity = 71/182 (39.01%), Postives = 113/182 (62.09%), Query Frame = 0
Query: 113 VDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEG-VGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
VDLD L+ +M+ L L+ +FSG+R GR A M D + VQAYG++ P+S V V++ P + I V+D ++ V A++ S L LNP VDG ++ +P+P+ + E RQ +K+ + E AR +R +RR+GMD K K+G + +DD R +S ++ +T++ + V LEKK++EI V
Sbjct: 6 VDLDDLKRRMQGALASLKTDFSGLRTGRASASMLDPVSVQAYGQSMPISQVGTVSVPEPRMVAIQVWDKTMVAAVERAIRESNLGLNPVVDGQLLRLPIPELNQERRQELIKVAHKYAEQARVAIRHVRRDGMDTAKKAEKDGDISQDDSRVASDEVQKLTDQMIGEVDSMLEKKEQEISQV 187
BLAST of EWM25543.1 vs. NCBI_GenBank
Match: gi|1094492844|emb|SEM88095.1| (ribosome recycling factor [Maribius pelagius]) HSP 1 Score: 138.272 bits (347), Expect = 1.514e-36 Identity = 65/182 (35.71%), Postives = 112/182 (61.54%), Query Frame = 0
Query: 112 LVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
++D D LQ +M+ + L EF +R GR A M + + V+AYG+ATP++ V V + P + I+V+D ++ V +A++ S L +NP+++G ++ +P+P+ + E R+ K+ Q E AR +R +RR+GMD++K + + EDD + ++ MT ++K+V EALE K+ EIM V
Sbjct: 6 MLDTDDLQRRMDGAMANLRSEFGSLRTGRASASMLEPVMVEAYGQATPINQVGTVNVPEPRMVTINVWDKSLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRDLSKVAGQYAENARVAIRNVRRDGMDQIKKAKSDNLSEDDQKFWEAEVQEMTNTYIKKVDEALESKQAEIMQV 187
BLAST of EWM25543.1 vs. NCBI_GenBank
Match: gi|518886436|ref|WP_020042311.1| (ribosome-recycling factor [Salipiger mucosus] >gi|528096412|gb|EPX78147.1| Ribosome recycling factor [Salipiger mucosus DSM 16094]) HSP 1 Score: 137.502 bits (345), Expect = 3.171e-36 Identity = 64/181 (35.36%), Postives = 116/181 (64.09%), Query Frame = 0
Query: 113 VDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
+D D L+ +M+ L L EF+ +R GR A M + + V+AYG+ TP++ V V + P + I+V+D +++ V +A++ S L +NP+++G ++ +P+P+ + E R+ K+ Q E AR ++R +RR+GMD++K +G+ EDD + ++ +T+E++K+V ALE K++EIM V
Sbjct: 7 LDTDDLKRRMDGTLSNLRTEFASLRTGRASASMLEPVQVEAYGQMTPINQVGTVNVPEPRMVTINVWDKGLVNKVEKAIRESGLGINPQMNGTIIMLPIPELNEERRRELGKVAGQYAEHARVSIRNVRRDGMDQIKKAKADGISEDDQKFWETEVQELTDEYIKKVDAALETKQEEIMQV 187 The following BLAST results are available for this feature:
BLAST of EWM25543.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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