EWM25543.1, cds5131 (CDS) Nannochloropsis gaditana

Overview
NameEWM25543.1
Unique Namecds5131
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:242827..243028 +
Alignment locationCM002465.1:243346..244025 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25543.1
Productribosome recycling factor
Orig transcript idgnl|cribi|Naga_100232g9.7111.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:242827..243028 +
CM002465.1supercontigCM002465.1:243346..244025 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR002661Ribosome_recyc_fac
IPR023584Ribosome_recyc_fac_dom
Homology
BLAST of EWM25543.1 vs. NCBI_GenBank
Match: gi|585107313|gb|EWM25543.1| (ribosome recycling factor [Nannochloropsis gaditana])

HSP 1 Score: 600.127 bits (1546), Expect = 0.000e+0
Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 0
Query:    1 MSSFSSGICMRHLSRRLPSPRTKSIMNRALVRAFGGQSNCISRTVSLLQPPVISGLPSQAVRNFSKKDRRKGSANAGGSGSGSGTAAPSRHTAPHHHHAPSIGGVTHNEKPLVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
            MSSFSSGICMRHLSRRLPSPRTKSIMNRALVRAFGGQSNCISRTVSLLQPPVISGLPSQAVRNFSKKDRRKGSANAGGSGSGSGTAAPSRHTAPHHHHAPSIGGVTHNEKPLVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV
Sbjct:    1 MSSFSSGICMRHLSRRLPSPRTKSIMNRALVRAFGGQSNCISRTVSLLQPPVISGLPSQAVRNFSKKDRRKGSANAGGSGSGSGTAAPSRHTAPHHHHAPSIGGVTHNEKPLVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293          
BLAST of EWM25543.1 vs. NCBI_GenBank
Match: gi|553179949|ref|XP_005852792.1| (ribosome recycling factor [Nannochloropsis gaditana CCMP526] >gi|422295738|gb|EKU23037.1| ribosome recycling factor [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 598.586 bits (1542), Expect = 0.000e+0
Identity = 292/293 (99.66%), Postives = 293/293 (100.00%), Query Frame = 0
Query:    1 MSSFSSGICMRHLSRRLPSPRTKSIMNRALVRAFGGQSNCISRTVSLLQPPVISGLPSQAVRNFSKKDRRKGSANAGGSGSGSGTAAPSRHTAPHHHHAPSIGGVTHNEKPLVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
            MSSFSSGICMRHLSRRLPSPRTKSIMNRALVRAFGGQSNCISRTVSLLQPPVISGLPSQAVRNFSKKDRRKGSANAGGSGSGSGTAAPSRHTAPHHHHAPSIGGVTHNE+PLVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV
Sbjct:    1 MSSFSSGICMRHLSRRLPSPRTKSIMNRALVRAFGGQSNCISRTVSLLQPPVISGLPSQAVRNFSKKDRRKGSANAGGSGSGSGTAAPSRHTAPHHHHAPSIGGVTHNEQPLVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293          
BLAST of EWM25543.1 vs. NCBI_GenBank
Match: gi|1097518775|emb|SFQ52810.1| (ribosome recycling factor [Roseivivax halotolerans])

HSP 1 Score: 141.739 bits (356), Expect = 7.284e-38
Identity = 64/181 (35.36%), Postives = 117/181 (64.64%), Query Frame = 0
Query:  113 VDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
            +D D L+ +M+  +  L  EF+ +R GR  A M + + V+AYG+ TP++ V  V +  P +  I+V+D  +++ V +A++ S L +NP+++G ++ +P+P+ + E R+   K+  Q  E AR ++R +RR+GMD++K    +G+ EDD +     ++ +T++++KRV EALE K++EIM V
Sbjct:    7 LDTDDLKRRMDGAMSNLRTEFASLRTGRASASMLEPVQVEAYGQMTPINQVGTVNVPEPRMVTINVWDKSLVNKVDKAIRESGLGINPQMNGTIIMLPIPELNEERRRELTKVAGQYAENARVSVRNVRRDGMDQIKKAKNDGMSEDDQKFWETEVQDLTDDYIKRVDEALETKQQEIMQV 187          
BLAST of EWM25543.1 vs. NCBI_GenBank
Match: gi|1213277623|ref|WP_088663982.1| (ribosome recycling factor [Roseovarius sp. 22II1-1F6A] >gi|1212231264|gb|OWU68206.1| ribosome-recycling factor [Roseovarius sp. 22II1-1F6A])

HSP 1 Score: 141.354 bits (355), Expect = 1.038e-37
Identity = 67/181 (37.02%), Postives = 114/181 (62.98%), Query Frame = 0
Query:  113 VDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
            +DLD L+ +M+  +  L+ EF  +R GR  A M D + V AYG+ TPL+ V  + +  P +  I+V+D  +++ V +A++ S L +NP VDG V+ +P+P+ + E R+   K+ +Q +E+AR  +R +RR+GMD LK    +G+ EDD +  S  ++++T+E++  +   LE K+ EIM V
Sbjct:    7 LDLDDLKRRMDGAMAALKTEFHTLRTGRAAATMVDPITVDAYGQITPLNQVGTINVPEPRMLTINVWDKSLINKVEKAIRESGLGINPVVDGTVIRLPIPELNEERRREMTKIAAQYSESARVAVRNVRRDGMDILKKAKNDGLSEDDFKIWSDEVQTLTDEYIASIDSTLEAKQAEIMQV 187          
BLAST of EWM25543.1 vs. NCBI_GenBank
Match: gi|1119858414|ref|WP_072748366.1| (ribosome recycling factor [Pleomorphobacterium xiamenense] >gi|1094341118|emb|SET84400.1| ribosome recycling factor [Pleomorphobacterium xiamenense] >gi|1109828144|emb|SHN76474.1| ribosome recycling factor [Pleomorphobacterium xiamenense])

HSP 1 Score: 140.584 bits (353), Expect = 1.892e-37
Identity = 70/176 (39.77%), Postives = 110/176 (62.50%), Query Frame = 0
Query:  118 LQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
            LQ +M+  L  L+ EF+ +R GR  A M D++ V AYG  TP++ VA V +  P +  I+V+D  ++  V +A++AS L +NP VDG ++ +P+P+ + E R+   K+  Q  E AR  +R +RR+GMD +K     G+ EDD +  S  I+SMT++ + R+ E LE+K+ EIM V
Sbjct:   12 LQRRMDGALAALKAEFASLRTGRASASMLDNILVDAYGAPTPINQVATVNVPEPRMITINVWDKSLVGKVEKAIRASGLGINPVVDGTILRLPIPELNEERRRELAKVAGQYAEQARIAVRNVRRDGMDMVKKAKAAGMSEDDQKMWSDEIQSMTDKTIARIDELLERKQAEIMQV 187          
BLAST of EWM25543.1 vs. NCBI_GenBank
Match: gi|1183627514|ref|WP_084862043.1| (ribosome recycling factor [Rhodobacteraceae bacterium WDS1C4])

HSP 1 Score: 140.198 bits (352), Expect = 2.754e-37
Identity = 64/182 (35.16%), Postives = 117/182 (64.29%), Query Frame = 0
Query:  112 LVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
            ++D D L  +ME  +  L  EF+ +R GR  A M + + V+AYG+ TP++ V  V +  P +  ++V+D  +++ V +A++ S L +NP+++G ++ +P+P+ + E R+   K+  Q  E AR ++R +RR+GMDR+K    +G+ EDD +   + ++ MT++++K+V +ALE K+ EIM V
Sbjct:    6 ILDTDDLTRRMEGAMSNLRTEFASLRTGRASASMLEPVQVEAYGQMTPINQVGTVNVPEPRMVTVNVWDKSMVNKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRELGKVAGQYAENARVSIRNVRRDGMDRIKKAKADGLSEDDQKFWEQEVQEMTDKYIKQVDDALEHKQAEIMQV 187          
BLAST of EWM25543.1 vs. NCBI_GenBank
Match: gi|1120259672|ref|WP_073126088.1| (ribosome recycling factor [Maribius salinus] >gi|1109916165|emb|SHI45030.1| ribosome recycling factor [Maribius salinus])

HSP 1 Score: 138.658 bits (348), Expect = 9.052e-37
Identity = 66/182 (36.26%), Postives = 112/182 (61.54%), Query Frame = 0
Query:  112 LVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
            ++D D LQ +M+  +  L  EF  +R GR  A M + + V+AYG+ATP++ V  V +  P L  I+V+D  ++  V +A++ S L +NP+++G ++ +P+P+ + E R+   K+  Q  E AR  +R +RR+GMD++K    + + EDD +     ++ MT  ++K+V EALE K+ EIM V
Sbjct:    6 MLDTDDLQRRMDGAMANLRSEFGSLRTGRASASMLEPVMVEAYGQATPINQVGTVNVPEPRLVTINVWDKSLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRDLSKVAGQYAENARVAIRNVRRDGMDQIKKAKADNLSEDDQKFWEAEVQEMTNTYIKKVDEALESKQAEIMQV 187          
BLAST of EWM25543.1 vs. NCBI_GenBank
Match: gi|1057006373|ref|WP_068417889.1| (ribosome recycling factor [Labrenzia sp. OB1] >gi|1020949803|gb|KZM48001.1| ribosome-recycling factor [Labrenzia sp. OB1])

HSP 1 Score: 138.272 bits (347), Expect = 1.209e-36
Identity = 71/182 (39.01%), Postives = 113/182 (62.09%), Query Frame = 0
Query:  113 VDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEG-VGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
            VDLD L+ +M+  L  L+ +FSG+R GR  A M D + VQAYG++ P+S V  V++  P +  I V+D  ++  V  A++ S L LNP VDG ++ +P+P+ + E RQ  +K+  +  E AR  +R +RR+GMD  K   K+G + +DD R +S  ++ +T++ +  V   LEKK++EI  V
Sbjct:    6 VDLDDLKRRMQGALASLKTDFSGLRTGRASASMLDPVSVQAYGQSMPISQVGTVSVPEPRMVAIQVWDKTMVAAVERAIRESNLGLNPVVDGQLLRLPIPELNQERRQELIKVAHKYAEQARVAIRHVRRDGMDTAKKAEKDGDISQDDSRVASDEVQKLTDQMIGEVDSMLEKKEQEISQV 187          
BLAST of EWM25543.1 vs. NCBI_GenBank
Match: gi|1094492844|emb|SEM88095.1| (ribosome recycling factor [Maribius pelagius])

HSP 1 Score: 138.272 bits (347), Expect = 1.514e-36
Identity = 65/182 (35.71%), Postives = 112/182 (61.54%), Query Frame = 0
Query:  112 LVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
            ++D D LQ +M+  +  L  EF  +R GR  A M + + V+AYG+ATP++ V  V +  P +  I+V+D  ++  V +A++ S L +NP+++G ++ +P+P+ + E R+   K+  Q  E AR  +R +RR+GMD++K    + + EDD +     ++ MT  ++K+V EALE K+ EIM V
Sbjct:    6 MLDTDDLQRRMDGAMANLRSEFGSLRTGRASASMLEPVMVEAYGQATPINQVGTVNVPEPRMVTINVWDKSLVGKVEKAIRESGLGINPQLNGTIIMLPIPELNEERRRDLSKVAGQYAENARVAIRNVRRDGMDQIKKAKSDNLSEDDQKFWEAEVQEMTNTYIKKVDEALESKQAEIMQV 187          
BLAST of EWM25543.1 vs. NCBI_GenBank
Match: gi|518886436|ref|WP_020042311.1| (ribosome-recycling factor [Salipiger mucosus] >gi|528096412|gb|EPX78147.1| Ribosome recycling factor [Salipiger mucosus DSM 16094])

HSP 1 Score: 137.502 bits (345), Expect = 3.171e-36
Identity = 64/181 (35.36%), Postives = 116/181 (64.09%), Query Frame = 0
Query:  113 VDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGNVVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
            +D D L+ +M+  L  L  EF+ +R GR  A M + + V+AYG+ TP++ V  V +  P +  I+V+D  +++ V +A++ S L +NP+++G ++ +P+P+ + E R+   K+  Q  E AR ++R +RR+GMD++K    +G+ EDD +     ++ +T+E++K+V  ALE K++EIM V
Sbjct:    7 LDTDDLKRRMDGTLSNLRTEFASLRTGRASASMLEPVQVEAYGQMTPINQVGTVNVPEPRMVTINVWDKGLVNKVEKAIRESGLGINPQMNGTIIMLPIPELNEERRRELGKVAGQYAEHARVSIRNVRRDGMDQIKKAKADGISEDDQKFWETEVQELTDEYIKKVDAALETKQEEIMQV 187          
The following BLAST results are available for this feature:
BLAST of EWM25543.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107313|gb|EWM25543.1|0.000e+0100.00ribosome recycling factor [Nannochloropsis gaditan... [more]
gi|553179949|ref|XP_005852792.1|0.000e+099.66ribosome recycling factor [Nannochloropsis gaditan... [more]
gi|1097518775|emb|SFQ52810.1|7.284e-3835.36ribosome recycling factor [Roseivivax halotolerans... [more]
gi|1213277623|ref|WP_088663982.1|1.038e-3737.02ribosome recycling factor [Roseovarius sp. 22II1-1... [more]
gi|1119858414|ref|WP_072748366.1|1.892e-3739.77ribosome recycling factor [Pleomorphobacterium xia... [more]
gi|1183627514|ref|WP_084862043.1|2.754e-3735.16ribosome recycling factor [Rhodobacteraceae bacter... [more]
gi|1120259672|ref|WP_073126088.1|9.052e-3736.26ribosome recycling factor [Maribius salinus] >gi|1... [more]
gi|1057006373|ref|WP_068417889.1|1.209e-3639.01ribosome recycling factor [Labrenzia sp. OB1] >gi|... [more]
gi|1094492844|emb|SEM88095.1|1.514e-3635.71ribosome recycling factor [Maribius pelagius][more]
gi|518886436|ref|WP_020042311.1|3.171e-3635.36ribosome-recycling factor [Salipiger mucosus] >gi|... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5143rna5143Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications