rna5134, rna5134 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5134
Unique Name	rna5134
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1890
Alignment location	CM002465.1:209325..210337 +

Link to JBrowse

Properties


Property Name	Value
Product	e3 ubiquitin-protein ligase ring1
Orig transcript id	gnl\|cribi\|Naga_100130g11.10550.mrna
Orig protein id	gnl\|cribi\|Naga_100130g11.10550
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:209325..210337 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100130g11	gene4955	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5134	rna5134-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25547.1	cds5122	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:209325..210337+
coding sequence from alignment at CM002465.1:209325..210337+

mRNA sequence

>rna5134 ID=rna5134|Name=rna5134|organism=Nannochloropsis gaditana|type=mRNA|length=1890bp
ATGTCATCGGCCACAAAGTGGACTTCCTCCGGTGCCGATGGAGCCGAGAA
CTGCAGCATTACTGGCAATGATAAGGCTCGGAATACTCGGCAACCCGCTT
ACAATCGTCTTCCTCGAAAACATAAATCAAGGAGCCCTTCCTCTGCGACC
GGCATTACTGACTCACTGGCAGAGTTCGCCGAGCAAACTTTCGTGCCAGA
AGAATACGCAGAAGCATTTTTTGCGGCTCACCCAGAAGCAGAAGCGGAAG
AACGATGTGCGGAATTGACGGACCTGAGATGTCAAACCCAAGAGTTGTTG
CGGGCCGAAGTGGCTTCGCATTACCAGCTCTTCATGCGGAGTACAGAAGA
TATCCAACACGTGGAAGCAGACATCGCGAGGCTTCGCAGGCATGTGGGCA
GGATGCAAAAATCCCTGAAAGCGCTTGATGGTGCCATGACCACCACTTTA
TCCGGCGCCGCGGCAGATAACGTGAGTATAGCCTTCGCCGCAAGCTCAAA
GGTGAGAGATGGCAGCATAGCAATCAAAGAGATGGAGGATGGTGGTCAGG
ATGGAATAGGTGCTCGTGCACGTGACGTGGCATCTCTGCCGGAATCCTTG
CGGTCGTGGGGGGCGACAGGGGCGACAGGAAAGAGAGGAATGGCGGGAGA
GGGACGTGGCGGTGGATCGGACGGCTTCAAAGGCGGGTTACACCACCAGG
GCAGTGACCCGGCCGCAAATTTATCGTCGGATTTGGAGGGAAAGGGGCCG
AGTGGCCAGCCTGCCCCCAATTCCTTGGAGAGAGACGACTTGCCTGCTTG
GGTCGCTGCCGCCATGGAAGACCTGGACAAATGCATCGTCGAAAATCAAC
GCTCTGTGGCCGTGAATCACATTGTCAAGCTCCGCGCCCTGCTTGCCTCC
CTTTCGCCCTCCCGCGCATCGTCCCCTCACAGCCAAGACCTGCAACGTCG
CGTCACCAGCAAGGGGAAAGAAATCGCAGGGCGGATCGTCCGGGAACTCG
ATGCTCTGGCCCCCGGGGCCAACCTCTCTATCCTCTTCGATTTCGCGGAC
ATGGCACAGCAGCTTCGCTTTCTGGTGGCCCTGGACGAGGCGGAGACGGC
GGTCGACTTCTTCGTGCGGAACAAGGGCGGTGTCTTGGCGCGGGCCCTCC
ACTCCCCCGAAACCAGCGGGGAGCCGCTGGTCTATGTGGCGGTGTTAGCA
GAGCGGTTTTTCGGACTGATGGCAGACGCCTGTGAGTCTTTCGATGCGCT
TTTTACCGTGAGCGTTTCGGAGGGCAGGTCCGAAGCTATAACCGCAGGCG
GTACCCCCATAACGCCCCCTCCAAATTTCGAGGCATTCACAAGCACGGAC
GTTGAAAATCAACGCGGTGGCCCCATGTCGACGCCATGGCCATCCGTTCG
GCCTCCCGAGTGCTTCTTGCGCCTCGTCCTGTGGGTAGAGGAGGAAGTGA
GGCAGTTTGCGGTCTTGTTGGGTCGCCAATTGCGAAGCCTGCGCCAAGAT
TGGTTGCTGTACCGGCTCCGTGTGGAGGGAAAAGCCCGGGGAAAAGACGG
GAAGCTGGCAAAGGGAATTATCGCAGGCAGCGGCGGGGATGGAACAGTAC
GCGTTCTTGGGGCCTTGACAGATATCACCCTGCAAAACCTGCGGCAGTGG
ACCGAAGACCCTTGGGTGCTGGTGGATGCGACGGCGATCGAGATAGAAGA
GGTCCGGCCTGTGTTTGACCTCTACACTCGGACCGTCGATGCGATGGGTG
GAAAGGTTGCTGCGGAAGAGGCTTCGGCCGCTGCCATTTCCTCTCCTCCA
AAGTCCGGCTCAGCTCCGCCTGTGAAACAGCCACCCTCGGGAACGTCACC
ACCCTCTGGAGCTTTTTCGCGCCTGACTTTGAAAAAGTAG

protein sequence of rna5134

>rna5134-protein ID=rna5134-protein|Name=rna5134|organism=Nannochloropsis gaditana|type=polypeptide|length=112bp
MNALLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAEER
ECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALEEE
GEPGREGEGGGR

mRNA from alignment at CM002465.1:209325..210337+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5134 ID=rna5134|Name=rna5134|organism=Nannochloropsis gaditana|type=mRNA|length=1013bp|location=Sequence derived from alignment at CM002465.1:209325..210337+ (Nannochloropsis gaditana)
gaggaggagaagcagaagGATCTGCAGATATCTTGATGGAGCTGGTAATG
GAATCTGTGCGAAGATCACtaatgggaggaggaggaggagaaggagcagg
aggaggaggggggggggaaggagagggggcacGATTTTTGGAGAGGATGG
TAGGTAATGTCTTcactggaggaggtgaagtAGGCgaagaaggtgggggg
ggggtatTATTGGGGATTACGCAGTCGGGGACATGAACGCGTTGTTGGCC
CAATtgatgcggagggaggcccaTCAGACCCATGCTTCTCCAGCGAGTGA
GAGGGCGATCGCCTCTTTGGAAACTgtggtgtgggaggaggtgcgggaag
ggacagacagagggggaggggcggaagagagggagtgcgTGGTCTGCCAA
GAGGAATTGGGCGACGGAAAGGTGCTGAAGAGAATGCCGTGCGGGCATGT
TTTCCACGGGGAGTGTGTGGAGACCTGGCTGCGGAGACACGCCAACAACT
GCCCCATCTGTCGACGCgcgcttgaggaggagggagagccagggagggag
ggggagggaggagggaggtaaggacgggggggagggaatggagcaggggg
ggatACTTCAGCGGTTGGAGGCAGTCCTGCGGCGAGGCGGCTCCTGGttg
ctggggagggagggagagaagagtaggagagggagggagggaggaatacT
TTCGTTGGAAGAAGGCTCGTGTGGATGCTGCGAGCGGCCTTGTCCATCTT
TCAGGCGGCCTCCATAGTGCCAGAAGCAACTTCAATCcaacaagggaggg
gaggcggtgaggaTGGCTTGGAGGGTTGGGGAAAAGTCCGAGGGCCTCTG
ACGAAGCAGGAACTCCTTTGTCGGTGGGTGCCGATGTGTGTGATTGGTAG
CGGGGTATCGCGCAATGGAATGGCTTCATGCAGGATGTGAGGTCCCAAAT
CCCAGAAAATGTCCGCGTAAATAACAAAAAAAGACCTGAAACAAGCGATG
CGCTTCTAGAAGC

Coding sequence (CDS) from alignment at CM002465.1:209325..210337+

>rna5134 ID=rna5134|Name=rna5134|organism=Nannochloropsis gaditana|type=CDS|length=339bp|location=Sequence derived from alignment at CM002465.1:209325..210337+ (Nannochloropsis gaditana)
ATGAACGCGTTGTTGGCCCAATtgatgcggagggaggcccaTCAGACCCA
TGCTTCTCCAGCGAGTGAGAGGGCGATCGCCTCTTTGGAAACTgtggtgt
gggaggaggtgcgggaagggacagacagagggggaggggcggaagagagg
gagtgcgTGGTCTGCCAAGAGGAATTGGGCGACGGAAAGGTGCTGAAGAG
AATGCCGTGCGGGCATGTTTTCCACGGGGAGTGTGTGGAGACCTGGCTGC
GGAGACACGCCAACAACTGCCCCATCTGTCGACGCgcgcttgaggaggag
ggagagccagggagggagggggagggaggagggaggtaa

Synonyms

Publications