EWM25547.1, cds5122 (CDS) Nannochloropsis gaditana

Overview
NameEWM25547.1
Unique Namecds5122
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:209557..209895 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25547.1
Producte3 ubiquitin-protein ligase ring1
Orig transcript idgnl|cribi|Naga_100130g11.10550.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:209557..209895 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR019453VPS39/TGF_beta_rcpt-assoc_2
IPR001841Znf_RING
Homology
BLAST of EWM25547.1 vs. NCBI_GenBank
Match: gi|585107318|gb|EWM25547.1| (e3 ubiquitin-protein ligase ring1 [Nannochloropsis gaditana])

HSP 1 Score: 223.016 bits (567), Expect = 1.008e-73
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0
Query:    1 MNALLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALEEEGEPGREGEGGGR 112
            MNALLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALEEEGEPGREGEGGGR
Sbjct:    1 MNALLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALEEEGEPGREGEGGGR 112          
BLAST of EWM25547.1 vs. NCBI_GenBank
Match: gi|1026051178|ref|XP_016570161.1| (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Capsicum annuum])

HSP 1 Score: 78.9518 bits (193), Expect = 8.121e-16
Identity = 46/94 (48.94%), Postives = 59/94 (62.77%), Query Frame = 0
Query:   20 PASERAIASLETVVWEEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRAL-EEEGEPGREGEGGGR 112
            PAS+ +I  L TV   +VRE        E+ ECVVC +E+G G+V+K MPC H FHG+CV TWL+ H  +CPICR  + EEE +   E E G R
Sbjct:  100 PASKASIEELPTV---DVREED------EKDECVVCLDEMGVGEVVKEMPCKHRFHGDCVVTWLKSHG-SCPICRYKMPEEESDLNDEKENGRR 183          
BLAST of EWM25547.1 vs. NCBI_GenBank
Match: gi|1117509192|ref|XP_019441686.1| (PREDICTED: E3 ubiquitin-protein ligase RING1 [Lupinus angustifolius] >gi|1102714035|gb|OIW12755.1| hypothetical protein TanjilG_24688 [Lupinus angustifolius])

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-15
Identity = 43/115 (37.39%), Postives = 64/115 (55.65%), Query Frame = 0
Query:    4 LLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRAL-----EEEGEP-GREGEGGGR 112
            L+ QL   + ++    PAS+ AI +L TV+ +      D    +E  +C VCQ+E   G  +K+MPC HV+HG+C+  WL+ H N+CP+CR  L     + E  P G +G  GG 
Sbjct:  160 LIQQLAENDPNRYGTPPASKSAIDNLPTVIVD------DELLNSELNQCAVCQDEFEKGSQVKQMPCKHVYHGDCLIPWLQLH-NSCPVCRHELPTDDSDYENRPRGAQGNAGGN 267          
BLAST of EWM25547.1 vs. NCBI_GenBank
Match: gi|229596686|ref|XP_001007660.3| (zinc finger, C3HC4 type (RING finger) protein [Tetrahymena thermophila SB210] >gi|225565166|gb|EAR87415.3| zinc finger, C3HC4 type (RING finger) protein (macronuclear) [Tetrahymena thermophila SB210])

HSP 1 Score: 78.5666 bits (192), Expect = 3.279e-15
Identity = 39/104 (37.50%), Postives = 61/104 (58.65%), Query Frame = 0
Query:    1 MNALLAQLMRREAHQTHASPASERAIASLETVVW--EEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALEEEGE 102
             + ++  LMR + +     PASE +I++L TV +  E+V+E T         EC VC+EE  +G+ L +MPC H++H  C+ TWL+ H N+CP CR  L  + +
Sbjct:  172 FDNIIDFLMRNDPNVYGTPPASENSISNLPTVTFSTEQVKEET-------LCECSVCKEEFTEGEQLVKMPCNHMYHSSCLVTWLKMH-NSCPTCRYELPTDNQ 267          
BLAST of EWM25547.1 vs. NCBI_GenBank
Match: gi|389628598|ref|XP_003711952.1| (hypothetical protein MGG_06087 [Magnaporthe oryzae 70-15] >gi|351644284|gb|EHA52145.1| hypothetical protein MGG_06087 [Magnaporthe oryzae 70-15])

HSP 1 Score: 78.9518 bits (193), Expect = 6.602e-15
Identity = 40/99 (40.40%), Postives = 53/99 (53.54%), Query Frame = 0
Query:    1 MNALLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALEE 99
             + +++Q+M        A PASE AI  LE    +E   GTD     E  EC +C ++L  G     +PC H FHGECV  WL+ H N CPICR  +E+
Sbjct:  270 FDRIISQMMEANPMSNAAPPASEAAIEKLERKKLDEKMLGTD-----ETVECTICMDDLSLGDEATVLPCKHFFHGECVTIWLKEH-NTCPICRTPMEQ 362          
BLAST of EWM25547.1 vs. NCBI_GenBank
Match: gi|440470985|gb|ELQ40024.1| (hypothetical protein OOU_Y34scaffold00464g107 [Magnaporthe oryzae Y34] >gi|440478538|gb|ELQ59359.1| hypothetical protein OOW_P131scaffold01360g1 [Magnaporthe oryzae P131])

HSP 1 Score: 78.9518 bits (193), Expect = 6.697e-15
Identity = 40/99 (40.40%), Postives = 53/99 (53.54%), Query Frame = 0
Query:    1 MNALLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALEE 99
             + +++Q+M        A PASE AI  LE    +E   GTD     E  EC +C ++L  G     +PC H FHGECV  WL+ H N CPICR  +E+
Sbjct:  297 FDRIISQMMEANPMSNAAPPASEAAIEKLERKKLDEKMLGTD-----ETVECTICMDDLSLGDEATVLPCKHFFHGECVTIWLKEH-NTCPICRTPMEQ 389          
BLAST of EWM25547.1 vs. NCBI_GenBank
Match: gi|685402645|ref|XP_009220182.1| (hypothetical protein GGTG_04126 [Gaeumannomyces tritici R3-111a-1] >gi|402084019|gb|EJT79037.1| hypothetical protein GGTG_04126 [Gaeumannomyces tritici R3-111a-1])

HSP 1 Score: 78.5666 bits (192), Expect = 1.015e-14
Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 0
Query:    1 MNALLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALEEEGEPGREGEGGG 111
            ++ +++ LM        A PAS+ A+  LE    +    GT      E+ EC +C +EL  G  +  +PC H FHG+CV  WL+ H N CPICR  +EE+ +P    EG G
Sbjct:  274 LDRIISNLMEANPQSNAAPPASQTALDKLERKKLDTTMVGT-----GEKAECTICIDELHHGDEVTVLPCKHWFHGDCVVLWLKEH-NTCPICRAPIEEKRQPASSPEGLG 378          
BLAST of EWM25547.1 vs. NCBI_GenBank
Match: gi|367054468|ref|XP_003657612.1| (hypothetical protein THITE_2123477 [Thielavia terrestris NRRL 8126] >gi|347004878|gb|AEO71276.1| hypothetical protein THITE_2123477 [Thielavia terrestris NRRL 8126])

HSP 1 Score: 78.1814 bits (191), Expect = 1.095e-14
Identity = 43/108 (39.81%), Postives = 63/108 (58.33%), Query Frame = 0
Query:    4 LLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALEEEGEPGREGEGGG 111
            +L QL R +     A PAS  A+A L+T   ++      RG    + +C+VC +++  G     +PCGH FHG+CV  WL+ H N CP+CRR++E EGE G+ G+  G
Sbjct:  272 VLTQL-RDQLQPGGAPPASADALARLQTRELDDAMLA-GRGDDDGKAKCIVCVDDMVKGDKAAVLPCGHFFHGDCVMPWLKLH-NTCPVCRRSVEVEGE-GKPGKAAG 375          
BLAST of EWM25547.1 vs. NCBI_GenBank
Match: gi|514816067|ref|XP_004982780.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Setaria italica] >gi|944224206|gb|KQK88610.1| hypothetical protein SETIT_036044mg [Setaria italica])

HSP 1 Score: 78.1814 bits (191), Expect = 1.183e-14
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 0
Query:    4 LLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALEEEGEPGREG 107
            L+ QL   + ++    PA++ A++SL  VV  +          AE  EC VC+E+   G+V K+MPC H++H +C+  WL  H N+CPICR  L  + +P  EG
Sbjct:  210 LIEQLAENDPNRYGTPPAAKSALSSLPDVVVTDAMVA-----AAEGAECAVCKEDFSPGEVAKQMPCKHIYHNDCIVPWLELH-NSCPICRFELPTD-DPDYEG 306          
BLAST of EWM25547.1 vs. NCBI_GenBank
Match: gi|1070916761|gb|OEL17490.1| (E3 ubiquitin-protein ligase RING1 [Dichanthelium oligosanthes])

HSP 1 Score: 77.411 bits (189), Expect = 1.249e-14
Identity = 39/104 (37.50%), Postives = 58/104 (55.77%), Query Frame = 0
Query:    4 LLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALEEEGEPGREG 107
            L+ QL   + ++    PA++ A+ SL  VV  +          AE  EC VC+E+   G+V K+MPC H++H +C+  WL  H N+CPICR  L  + +P  EG
Sbjct:  119 LIEQLAENDPNRYGTPPAAKSALTSLPDVVVTD-----SMVAAAEGAECAVCKEDFSPGEVAKQMPCKHIYHTDCIMPWLELH-NSCPICRFELPTD-DPDYEG 215          
The following BLAST results are available for this feature:
BLAST of EWM25547.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107318|gb|EWM25547.1|1.008e-73100.00e3 ubiquitin-protein ligase ring1 [Nannochloropsis... [more]
gi|1026051178|ref|XP_016570161.1|8.121e-1648.94PREDICTED: E3 ubiquitin-protein ligase RNF181-like... [more]
gi|1117509192|ref|XP_019441686.1|1.179e-1537.39PREDICTED: E3 ubiquitin-protein ligase RING1 [Lupi... [more]
gi|229596686|ref|XP_001007660.3|3.279e-1537.50zinc finger, C3HC4 type (RING finger) protein [Tet... [more]
gi|389628598|ref|XP_003711952.1|6.602e-1540.40hypothetical protein MGG_06087 [Magnaporthe oryzae... [more]
gi|440470985|gb|ELQ40024.1|6.697e-1540.40hypothetical protein OOU_Y34scaffold00464g107 [Mag... [more]
gi|685402645|ref|XP_009220182.1|1.015e-1436.94hypothetical protein GGTG_04126 [Gaeumannomyces tr... [more]
gi|367054468|ref|XP_003657612.1|1.095e-1439.81hypothetical protein THITE_2123477 [Thielavia terr... [more]
gi|514816067|ref|XP_004982780.1|1.183e-1437.50PREDICTED: E3 ubiquitin-protein ligase RING1-like ... [more]
gi|1070916761|gb|OEL17490.1|1.249e-1437.50E3 ubiquitin-protein ligase RING1 [Dichanthelium o... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5134rna5134Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications