EWM25547.1, cds5122 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25547.1 vs. NCBI_GenBank
Match: gi|585107318|gb|EWM25547.1| (e3 ubiquitin-protein ligase ring1 [Nannochloropsis gaditana]) HSP 1 Score: 223.016 bits (567), Expect = 1.008e-73 Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0
Query: 1 MNALLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALEEEGEPGREGEGGGR 112
MNALLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALEEEGEPGREGEGGGR
Sbjct: 1 MNALLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALEEEGEPGREGEGGGR 112
BLAST of EWM25547.1 vs. NCBI_GenBank
Match: gi|1026051178|ref|XP_016570161.1| (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Capsicum annuum]) HSP 1 Score: 78.9518 bits (193), Expect = 8.121e-16 Identity = 46/94 (48.94%), Postives = 59/94 (62.77%), Query Frame = 0
Query: 20 PASERAIASLETVVWEEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRAL-EEEGEPGREGEGGGR 112
PAS+ +I L TV +VRE E+ ECVVC +E+G G+V+K MPC H FHG+CV TWL+ H +CPICR + EEE + E E G R
Sbjct: 100 PASKASIEELPTV---DVREED------EKDECVVCLDEMGVGEVVKEMPCKHRFHGDCVVTWLKSHG-SCPICRYKMPEEESDLNDEKENGRR 183
BLAST of EWM25547.1 vs. NCBI_GenBank
Match: gi|1117509192|ref|XP_019441686.1| (PREDICTED: E3 ubiquitin-protein ligase RING1 [Lupinus angustifolius] >gi|1102714035|gb|OIW12755.1| hypothetical protein TanjilG_24688 [Lupinus angustifolius]) HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-15 Identity = 43/115 (37.39%), Postives = 64/115 (55.65%), Query Frame = 0
Query: 4 LLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRAL-----EEEGEP-GREGEGGGR 112
L+ QL + ++ PAS+ AI +L TV+ + D +E +C VCQ+E G +K+MPC HV+HG+C+ WL+ H N+CP+CR L + E P G +G GG
Sbjct: 160 LIQQLAENDPNRYGTPPASKSAIDNLPTVIVD------DELLNSELNQCAVCQDEFEKGSQVKQMPCKHVYHGDCLIPWLQLH-NSCPVCRHELPTDDSDYENRPRGAQGNAGGN 267
BLAST of EWM25547.1 vs. NCBI_GenBank
Match: gi|229596686|ref|XP_001007660.3| (zinc finger, C3HC4 type (RING finger) protein [Tetrahymena thermophila SB210] >gi|225565166|gb|EAR87415.3| zinc finger, C3HC4 type (RING finger) protein (macronuclear) [Tetrahymena thermophila SB210]) HSP 1 Score: 78.5666 bits (192), Expect = 3.279e-15 Identity = 39/104 (37.50%), Postives = 61/104 (58.65%), Query Frame = 0
Query: 1 MNALLAQLMRREAHQTHASPASERAIASLETVVW--EEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALEEEGE 102
+ ++ LMR + + PASE +I++L TV + E+V+E T EC VC+EE +G+ L +MPC H++H C+ TWL+ H N+CP CR L + +
Sbjct: 172 FDNIIDFLMRNDPNVYGTPPASENSISNLPTVTFSTEQVKEET-------LCECSVCKEEFTEGEQLVKMPCNHMYHSSCLVTWLKMH-NSCPTCRYELPTDNQ 267
BLAST of EWM25547.1 vs. NCBI_GenBank
Match: gi|389628598|ref|XP_003711952.1| (hypothetical protein MGG_06087 [Magnaporthe oryzae 70-15] >gi|351644284|gb|EHA52145.1| hypothetical protein MGG_06087 [Magnaporthe oryzae 70-15]) HSP 1 Score: 78.9518 bits (193), Expect = 6.602e-15 Identity = 40/99 (40.40%), Postives = 53/99 (53.54%), Query Frame = 0
Query: 1 MNALLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALEE 99
+ +++Q+M A PASE AI LE +E GTD E EC +C ++L G +PC H FHGECV WL+ H N CPICR +E+
Sbjct: 270 FDRIISQMMEANPMSNAAPPASEAAIEKLERKKLDEKMLGTD-----ETVECTICMDDLSLGDEATVLPCKHFFHGECVTIWLKEH-NTCPICRTPMEQ 362
BLAST of EWM25547.1 vs. NCBI_GenBank
Match: gi|440470985|gb|ELQ40024.1| (hypothetical protein OOU_Y34scaffold00464g107 [Magnaporthe oryzae Y34] >gi|440478538|gb|ELQ59359.1| hypothetical protein OOW_P131scaffold01360g1 [Magnaporthe oryzae P131]) HSP 1 Score: 78.9518 bits (193), Expect = 6.697e-15 Identity = 40/99 (40.40%), Postives = 53/99 (53.54%), Query Frame = 0
Query: 1 MNALLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALEE 99
+ +++Q+M A PASE AI LE +E GTD E EC +C ++L G +PC H FHGECV WL+ H N CPICR +E+
Sbjct: 297 FDRIISQMMEANPMSNAAPPASEAAIEKLERKKLDEKMLGTD-----ETVECTICMDDLSLGDEATVLPCKHFFHGECVTIWLKEH-NTCPICRTPMEQ 389
BLAST of EWM25547.1 vs. NCBI_GenBank
Match: gi|685402645|ref|XP_009220182.1| (hypothetical protein GGTG_04126 [Gaeumannomyces tritici R3-111a-1] >gi|402084019|gb|EJT79037.1| hypothetical protein GGTG_04126 [Gaeumannomyces tritici R3-111a-1]) HSP 1 Score: 78.5666 bits (192), Expect = 1.015e-14 Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 0
Query: 1 MNALLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALEEEGEPGREGEGGG 111
++ +++ LM A PAS+ A+ LE + GT E+ EC +C +EL G + +PC H FHG+CV WL+ H N CPICR +EE+ +P EG G
Sbjct: 274 LDRIISNLMEANPQSNAAPPASQTALDKLERKKLDTTMVGT-----GEKAECTICIDELHHGDEVTVLPCKHWFHGDCVVLWLKEH-NTCPICRAPIEEKRQPASSPEGLG 378
BLAST of EWM25547.1 vs. NCBI_GenBank
Match: gi|367054468|ref|XP_003657612.1| (hypothetical protein THITE_2123477 [Thielavia terrestris NRRL 8126] >gi|347004878|gb|AEO71276.1| hypothetical protein THITE_2123477 [Thielavia terrestris NRRL 8126]) HSP 1 Score: 78.1814 bits (191), Expect = 1.095e-14 Identity = 43/108 (39.81%), Postives = 63/108 (58.33%), Query Frame = 0
Query: 4 LLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALEEEGEPGREGEGGG 111
+L QL R + A PAS A+A L+T ++ RG + +C+VC +++ G +PCGH FHG+CV WL+ H N CP+CRR++E EGE G+ G+ G
Sbjct: 272 VLTQL-RDQLQPGGAPPASADALARLQTRELDDAMLA-GRGDDDGKAKCIVCVDDMVKGDKAAVLPCGHFFHGDCVMPWLKLH-NTCPVCRRSVEVEGE-GKPGKAAG 375
BLAST of EWM25547.1 vs. NCBI_GenBank
Match: gi|514816067|ref|XP_004982780.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Setaria italica] >gi|944224206|gb|KQK88610.1| hypothetical protein SETIT_036044mg [Setaria italica]) HSP 1 Score: 78.1814 bits (191), Expect = 1.183e-14 Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 0
Query: 4 LLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALEEEGEPGREG 107
L+ QL + ++ PA++ A++SL VV + AE EC VC+E+ G+V K+MPC H++H +C+ WL H N+CPICR L + +P EG
Sbjct: 210 LIEQLAENDPNRYGTPPAAKSALSSLPDVVVTDAMVA-----AAEGAECAVCKEDFSPGEVAKQMPCKHIYHNDCIVPWLELH-NSCPICRFELPTD-DPDYEG 306
BLAST of EWM25547.1 vs. NCBI_GenBank
Match: gi|1070916761|gb|OEL17490.1| (E3 ubiquitin-protein ligase RING1 [Dichanthelium oligosanthes]) HSP 1 Score: 77.411 bits (189), Expect = 1.249e-14 Identity = 39/104 (37.50%), Postives = 58/104 (55.77%), Query Frame = 0
Query: 4 LLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAEERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALEEEGEPGREG 107
L+ QL + ++ PA++ A+ SL VV + AE EC VC+E+ G+V K+MPC H++H +C+ WL H N+CPICR L + +P EG
Sbjct: 119 LIEQLAENDPNRYGTPPAAKSALTSLPDVVVTD-----SMVAAAEGAECAVCKEDFSPGEVAKQMPCKHIYHTDCIMPWLELH-NSCPICRFELPTD-DPDYEG 215 The following BLAST results are available for this feature:
BLAST of EWM25547.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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