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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100130g15.10548.mrna |
| Orig protein id | gnl|cribi|Naga_100130g15.10548 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:198694..200877 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5131 ID=rna5131|Name=rna5131|organism=Nannochloropsis gaditana|type=mRNA|length=1444bp
AATGACACCTTTTCCCCCAATGCACACGCCTCCCCCCCTAAAAAAAGCCT
CATCCTCCTCATAACTTGGGTCTCTCAACATTTTGCATGATGACACACGC
TTTTGTCCGTGTCTTTGGCCACCAAAATTTCTTTCGTTTCCCACGCAGTC
TGGCACGAAACCTTTGCTTGTGTTTTTCAGCGAGATTGATCCTATCAAGG
AGTCGACTCCCTCCTTCTTATGCCTGAATCCCAAATGGCACGGCGACCGC
GGTGTGGCGCGGTTACGTCGGATGGGCTCTGTCGCATGGATAGGATTTTA
GACGCATGACTCGGTGGTGATGGGCAATGTTTCTCAGTCGGATCCTAATA
AACATCAAACATCCGATCCCGATTAAGTGTATGCTCCAATCCTCGAGTGT
TTCGTGTCCGAGGCCTACCACTCTGTTGGCCTGGAGGGTTGATGCAGGAT
CTTTGAGAAGCGGGAATTTATAGATTTTTGAGCAACTGGATGGTGGTGGT
CAAATCTTTGCTTCGAATTAGGTAACTGAGCACGCTATGTTCCTGCCCAC
GCTTACCATCCCCCTTCCTCAAACCCTTCCCTCTATTCCATCCTCCCACT
CCATCTTTGTTTGCAAAACGTACTGAATCTTCGGCTCCTGCTCCTGCCCT
TCCTCTCTTTCCATTTTCTTTTAGATGGCGTCCCCCCGTCCTGCCTCTTG
CACACCTTTCCTTTCGGAGGGATGCCTGCTATCCTACAAGGACATTGGTG
CTGAGGATTGCCCCGGCAGTGCGAGCCCCCACGGCAGCGATCTCGGCACC
GAAGGCCAGTCCTTCACGCCTCTTACAACATGGATGGCGCACCAATGCGT
CCTGGACCGGCAAGGGATGGAGGGCGTGGAGGTGAAAACCCCACCGTTGC
AGTGTCTCGGGGGGGGGGTACCTGCCCCTCTCCTGCGCACCGCCTTGGCG
AAAATCCAGCAAGATCTCGAGTTGGACGAAGAAGGGGGCAAAGCGGAGGG
GCATGGGCACAATTCCGACGTGGAGGGCACGTTGCATTTGTCAAGTCATG
GTGGCCCTGTTTCCCGTGCCACGGGTTTCGCGAGTGCCAGTGCTGGCCAT
TCGGGTATCACCCTGTCGCCGGAGGGGGCGGGCTGGGGTCCGGCGTTTGC
CTCGTCCTGCTCGCTCGACTCACTCACCACGGACATCATGGCGGGTACCG
ACGGCCTCCTAACGCCAGACATGCTGGGTGGCCTGGGGCCCTGGCAGACG
TCTCCGAGGTTCCTGGGCGAGGGGGTCGGGCTGAGGGAGGGAAAGGAGGG
CGAAGGGTGGGAGCTGGGAGAGACCTGTGAGGGGAACGAGGAGGACGAGG
CGGCGGGTGGCGTCCGAGAAGAGGCCGCTCCCTGCGGCGCCCTTCCTTCG
TCCTCGTGCCTCTATCTCCCTGCCCCCGCCTCCCCCCCCCCCTT back to topprotein sequence of rna5131 >rna5131-protein ID=rna5131-protein|Name=rna5131|organism=Nannochloropsis gaditana|type=polypeptide|length=485bp
SLPPSLLPDVFVTFKYDQPDALPSSTPPRHLKLYLGPLSSSLGLWESWGL
PVHAFASFAQALHASPYSLDTHLTALLPLLPPLALCTYDPCGAGVDQGFR
EGEREGGRARLWTLPSLSLRPTASLDVRVTSLPCPPSLLPSLLDLLKNQD
LSPSFWRDHFLLSGAGQEKVLQEAGREGGREEGLRAVYEFLLSYLLPSSS
SCKHWTEEALVDGLRITLYPPGGGEEGGQASVGKDTGTFTCAAGVGKGGK
GKEWATIRRARGEEVVGFVGEGREGRVSGGREGRRGARRGDRGRKSTSRA
TTPDDGGDNQGHKMPTRRSQEQGKKKRGRPSKVATAPSSSSSSFPSPSSP
PSPLPPSLLTDAYPGRPEPLGLHLPDRGRHVCRIAGCGNEYRWPDYQCKL
HGGGRCQYLWWLRGRGEGGRGEGPDGVGLVLACPKFHQSKNSKGELLCGE
HCRLTGAVYGEVSRKGKGRGGEAGVKKGKKMKTKE back to topmRNA from alignment at CM002465.1:198694..200877+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5131 ID=rna5131|Name=rna5131|organism=Nannochloropsis gaditana|type=mRNA|length=2184bp|location=Sequence derived from alignment at CM002465.1:198694..200877+ (Nannochloropsis gaditana)
tcgctccctccctccctccttcccgacgTCTTCGTCACCTTCAAATACGA
CCAGCCGgacgcccttccttcctccaccccaccaCGGCACCTGAAGCTCT
ACCTGGGCCCTTTATCCTCCAGCCTTGGCCTGTGGGAGTCTTGGGGCCTC
CCCGTGcacgccttcgcctccttcgcccaagccctccacgcGTCGCCCTA
TTCCCTCGACACCCACCtgaccgccctcctccccctccttcctcccctgg
ccTTGTGCACGTACGACCCTTGCGGGGCCGGCGTCGACCAGGGTtttagg
gagggagagcgggagggagggcgggcacgccTGTGGAcgctgccttccct
ctcccttcgtcccACTGCCTCGCTGGATGTGCGGGTGACGTcactccctt
gccctccctccctccttccctccctcctggatcTCCTCAAAAATCAGGAC
CTGTCCCCGTCCTTCTGGCGCgaccacttcctcctctccgggGCGGGGCA
AGAGAAGGTCttgcaggaggcagggagggagggagggagggaggaagggc
tgagGGCGGTCTACgaattcctcctctcctacctcctcccctcctcctcc
tcctgcaagcATTGGACCGAGGAGGCCCTTGTCGACGGGTTGCGGATCAC
GCTCTATCCccctggtggcggggaggagggcggccaggCATCCGTCGGGA
AAGACACGGGCACTTTCACCTGTGCTGCGGGCGTCggcaagggtgggaaa
gggaaggaatgggcgACAATCAGGCGCgctcggggggaggaggtggtggg
gttcgtaggggaagggagggaaggaagggtgtcaggagggagggaaggaa
ggagaggggccaggCGCGGCGATCGGGGGCGAAAGAGCACCTCTCGCGCC
ACCACGCCGGATGACGGCGGGGACAACCAGGGTCATAAAATGCCAACGAG
AAGAAGCCAGGAACAGGGCAAGAAGAAACGGGGCCGTCCCTCTAAGGTGG
CCactgccccttcttcctcctcttcctcctttccctccccttcctccccc
ccttccccactccctccctccctcctcacggACGCCTACCCCGGACGGCC
CGAACCCCtgggcctccaccttccagaCCGAGGGCGGCACGTGTGCCGGA
TCGCCGGCTGCGGCAACGAATACCGGTGGCCAGACTACCAGTGCAAGTTg
cacgggggcgggcgctgtCAATACCTGTGGTGGCttcggggaagggggga
gggaggccgtggggagGGCCCGGACGGGGTCGGGCTTGTTCTGGCCTGCC
CCAAATTCCATCAGAGCAAGAATTCAAAGGGAGAGCTGCTCTGTGGGGAG
CACTGTCGCCTGACGGGGGCTGTGTACGGAGAAGTGTcacggaaaggaaa
ggggcgaggaggggaggcgggtgttaagaaggggaagaaaatgaagacga
aggagtAGCGGTTGTTTTCCATAGGAGACAAGTAGTTGTTTGGATTGGTA
GCATTTGACTGGGGGGGTGGGAACGTGAGCCTGAGGCTCGTGTCTTGAga
tgagggaaaaagggggacgAGTATACTTAAGAAGGAGTGACGGTGAAAGT
GCGAGAAACAGGAGCAATGACGCCATGTCCCCAGATTCCTTAGGCTTGTC
TTgcgaaggaaaaagacggggaggggagtaTCGGGATGGGAGAATGTGGG
ACACACTGTTTGATAGCTGacccgggagggggggggggagattgTTGAAT
AGGCGTATATTGGTTATGTTTGTGGTGGCGTGGTTATCTTTGGACGCGGG
GACGTCACGTGGGCGTGGCCCAAGGGGTGCCTAAGGTAAGCTGTTGACAA
GAGACGCGAGCATGGCACAAATAGCCCTTTTcgacgtggggaggggaatc
GTTTAGGGAAAGAAATCGACTCGGTATCAGGGATGCACTTGTGAATAGAC
AAGGCGAGGCACCGATGGCAGCAGAGAAAAGGAACATCTGGGAGTCTGCG
TGAATTTCGAGGGTTACCCTTCCTTGGTATTCTTTTCCTTGATCGTCCGC
GGTCGTATTTCTCTCCCCCGTGGCTGCCACTTGTAGAATGGATGGACAGG
AGTCAAGACGTGACCTGCGCTCCTAGCAGCATTCGTCTATTTTCTTTTGT
TGTTCAGCGTCACTATTAAATTTGGGGAATTTAA back to topCoding sequence (CDS) from alignment at CM002465.1:198694..200877+ >rna5131 ID=rna5131|Name=rna5131|organism=Nannochloropsis gaditana|type=CDS|length=1458bp|location=Sequence derived from alignment at CM002465.1:198694..200877+ (Nannochloropsis gaditana)
tcgctccctccctccctccttcccgacgTCTTCGTCACCTTCAAATACGA
CCAGCCGgacgcccttccttcctccaccccaccaCGGCACCTGAAGCTCT
ACCTGGGCCCTTTATCCTCCAGCCTTGGCCTGTGGGAGTCTTGGGGCCTC
CCCGTGcacgccttcgcctccttcgcccaagccctccacgcGTCGCCCTA
TTCCCTCGACACCCACCtgaccgccctcctccccctccttcctcccctgg
ccTTGTGCACGTACGACCCTTGCGGGGCCGGCGTCGACCAGGGTtttagg
gagggagagcgggagggagggcgggcacgccTGTGGAcgctgccttccct
ctcccttcgtcccACTGCCTCGCTGGATGTGCGGGTGACGTcactccctt
gccctccctccctccttccctccctcctggatcTCCTCAAAAATCAGGAC
CTGTCCCCGTCCTTCTGGCGCgaccacttcctcctctccgggGCGGGGCA
AGAGAAGGTCttgcaggaggcagggagggagggagggagggaggaagggc
tgagGGCGGTCTACgaattcctcctctcctacctcctcccctcctcctcc
tcctgcaagcATTGGACCGAGGAGGCCCTTGTCGACGGGTTGCGGATCAC
GCTCTATCCccctggtggcggggaggagggcggccaggCATCCGTCGGGA
AAGACACGGGCACTTTCACCTGTGCTGCGGGCGTCggcaagggtgggaaa
gggaaggaatgggcgACAATCAGGCGCgctcggggggaggaggtggtggg
gttcgtaggggaagggagggaaggaagggtgtcaggagggagggaaggaa
ggagaggggccaggCGCGGCGATCGGGGGCGAAAGAGCACCTCTCGCGCC
ACCACGCCGGATGACGGCGGGGACAACCAGGGTCATAAAATGCCAACGAG
AAGAAGCCAGGAACAGGGCAAGAAGAAACGGGGCCGTCCCTCTAAGGTGG
CCactgccccttcttcctcctcttcctcctttccctccccttcctccccc
ccttccccactccctccctccctcctcacggACGCCTACCCCGGACGGCC
CGAACCCCtgggcctccaccttccagaCCGAGGGCGGCACGTGTGCCGGA
TCGCCGGCTGCGGCAACGAATACCGGTGGCCAGACTACCAGTGCAAGTTg
cacgggggcgggcgctgtCAATACCTGTGGTGGCttcggggaagggggga
gggaggccgtggggagGGCCCGGACGGGGTCGGGCTTGTTCTGGCCTGCC
CCAAATTCCATCAGAGCAAGAATTCAAAGGGAGAGCTGCTCTGTGGGGAG
CACTGTCGCCTGACGGGGGCTGTGTACGGAGAAGTGTcacggaaaggaaa
ggggcgaggaggggaggcgggtgttaagaaggggaagaaaatgaagacga
aggagtAG back to top
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