EWM25545.1, cds5119 (CDS) Nannochloropsis gaditana

Overview
NameEWM25545.1
Unique Namecds5119
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:198694..200151 +

Link to JBrowse

Properties
Property NameValue
Start range198694
Start range.
Protein idEWM25545.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100130g15.10548.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:198694..200151 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM25545.1 vs. NCBI_GenBank
Match: gi|585107316|gb|EWM25545.1| (hypothetical protein Naga_100130g15, partial [Nannochloropsis gaditana])

HSP 1 Score: 963.37 bits (2489), Expect = 0.000e+0
Identity = 485/485 (100.00%), Postives = 485/485 (100.00%), Query Frame = 0 
Query:    1 SLPPSLLPDVFVTFKYDQPDALPSSTPPRHLKLYLGPLSSSLGLWESWGLPVHAFASFAQALHASPYSLDTHLTALLPLLPPLALCTYDPCGAGVDQGFREGEREGGRARLWTLPSLSLRPTASLDVRVTSLPCPPSLLPSLLDLLKNQDLSPSFWRDHFLLSGAGQEKVLQEAGREGGREEGLRAVYEFLLSYLLPSSSSCKHWTEEALVDGLRITLYPPGGGEEGGQASVGKDTGTFTCAAGVGKGGKGKEWATIRRARGEEVVGFVGEGREGRVSGGREGRRGARRGDRGRKSTSRATTPDDGGDNQGHKMPTRRSQEQGKKKRGRPSKVATAPSSSSSSFPSPSSPPSPLPPSLLTDAYPGRPEPLGLHLPDRGRHVCRIAGCGNEYRWPDYQCKLHGGGRCQYLWWLRGRGEGGRGEGPDGVGLVLACPKFHQSKNSKGELLCGEHCRLTGAVYGEVSRKGKGRGGEAGVKKGKKMKTKE 485
            SLPPSLLPDVFVTFKYDQPDALPSSTPPRHLKLYLGPLSSSLGLWESWGLPVHAFASFAQALHASPYSLDTHLTALLPLLPPLALCTYDPCGAGVDQGFREGEREGGRARLWTLPSLSLRPTASLDVRVTSLPCPPSLLPSLLDLLKNQDLSPSFWRDHFLLSGAGQEKVLQEAGREGGREEGLRAVYEFLLSYLLPSSSSCKHWTEEALVDGLRITLYPPGGGEEGGQASVGKDTGTFTCAAGVGKGGKGKEWATIRRARGEEVVGFVGEGREGRVSGGREGRRGARRGDRGRKSTSRATTPDDGGDNQGHKMPTRRSQEQGKKKRGRPSKVATAPSSSSSSFPSPSSPPSPLPPSLLTDAYPGRPEPLGLHLPDRGRHVCRIAGCGNEYRWPDYQCKLHGGGRCQYLWWLRGRGEGGRGEGPDGVGLVLACPKFHQSKNSKGELLCGEHCRLTGAVYGEVSRKGKGRGGEAGVKKGKKMKTKE
Sbjct:    1 SLPPSLLPDVFVTFKYDQPDALPSSTPPRHLKLYLGPLSSSLGLWESWGLPVHAFASFAQALHASPYSLDTHLTALLPLLPPLALCTYDPCGAGVDQGFREGEREGGRARLWTLPSLSLRPTASLDVRVTSLPCPPSLLPSLLDLLKNQDLSPSFWRDHFLLSGAGQEKVLQEAGREGGREEGLRAVYEFLLSYLLPSSSSCKHWTEEALVDGLRITLYPPGGGEEGGQASVGKDTGTFTCAAGVGKGGKGKEWATIRRARGEEVVGFVGEGREGRVSGGREGRRGARRGDRGRKSTSRATTPDDGGDNQGHKMPTRRSQEQGKKKRGRPSKVATAPSSSSSSFPSPSSPPSPLPPSLLTDAYPGRPEPLGLHLPDRGRHVCRIAGCGNEYRWPDYQCKLHGGGRCQYLWWLRGRGEGGRGEGPDGVGLVLACPKFHQSKNSKGELLCGEHCRLTGAVYGEVSRKGKGRGGEAGVKKGKKMKTKE 485
[Close]
BLAST of EWM25545.1 vs. NCBI_GenBank
Match: gi|585101733|gb|EWM21503.1| (hypothetical protein Naga_100019g37 [Nannochloropsis gaditana])

HSP 1 Score: 78.5666 bits (192), Expect = 6.430e-12
Identity = 39/89 (43.82%), Postives = 45/89 (50.56%), Query Frame = 0 
Query:  371 GLHLPDRGRHVCRIAGCGNEYRWPDYQCKLHGGGRCQYLWWLRGRGEGGRGEGPDGVGLVLACPKFHQSKNSKGELLCGEHCRLTGAVY 459
            G HLP  GR +CR+  C    RWPDY C  HGGGRC++        EG              C  FHQ  NS G LLCG+HC+  GA Y
Sbjct:  393 GDHLPYNGRKICRVKNCDGNQRWPDYLCGQHGGGRCRW--------EG--------------CSLFHQGINSMGLLLCGKHCKAVGATY 459
The following BLAST results are available for this feature:
BLAST of EWM25545.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585107316|gb|EWM25545.1|0.000e+0100.00hypothetical protein Naga_100130g15, partial [Nann... [more]
gi|585101733|gb|EWM21503.1|6.430e-1243.82hypothetical protein Naga_100019g37 [Nannochlorops... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5131rna5131Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications