rna5130, rna5130 (mRNA) Nannochloropsis gaditana

Overview
Namerna5130
Unique Namerna5130
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1051
Alignment locationCM002465.1:197150..198593 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101420g1.8851.mrna
Orig protein idgnl|cribi|Naga_101420g1.8851
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:197150..198593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101420g1gene4951Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5130rna5130-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25555.1cds5118Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5130 ID=rna5130|Name=rna5130|organism=Nannochloropsis gaditana|type=mRNA|length=1051bp
GGCTTGCCACAAAGAAAACGGCAATGTTTATTGACACCATAGCTTGCTTT
GATGTGATAACATAGATGTGTCGAGATCGTGTGCTTGTGGCTTCGCGAAA
CACAAGTATTCGATATGAGCGATATAGAAGCTACTGTGGAGATGACTCAC
AGGAGGCAATCGGCCCGCTATCTCTTCAACCGACACAGGCATGCGCCTCC
TTCAAATCCAGCCTGTCTCTCTCTTTCTACTAGGTCTCGCCTTATCTCCC
ATGCGACGGGCAACAGCCTTTTCTTTCCCCCGCCGCGTTTCCCGTGCTGC
TTCGACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCTTCCCCTAACTCCGTCCAAGCCACTCCCAAGTCCAATGAACCA
ACCCGTCGTGCTGTCATCGCCAAATGGCTTGGCGGCGTTGGGCTTAGCGT
GGCGGCCACTGCCGCGCTGGGTACCCTTTTCTTTCCCCGGCGTCCTCTAG
AAACGCAGGCCGCGGAAATGTCTGCCCCTGCAGCCACTCCCCGAAGCTCA
ATGGGCTTGGACCTGACCCCTTTGTCTACGAACGAGGCTTTGAAAGCCGC
CGACAAGCTCAAGCTGAGCAAGCAAGAACGGAGAATACTCTTCGAGGCGG
GCACGGAGATGCCAGGCTCGGGAATGACGGCCAATGGGGTCAAGTACAGC
AGTAAAGCTGATGGCCTGTGGGTGTCGGCGCTTAGCGGCGTGCCACTCTT
CGACGCAAAGGCGAAATACAACAGTGGCACAGGCTGGCCCTCCTTCACCC
AGGTGGTGGATCCGGCCCACGTGATCGAACGGGTGGACCCTCGGGACGTG
GACGGGAAGCCCCAGTTCCTATGGCGGGTGGAGGTGCTCGACCGAAAGAG
CGGTACCCACCTCGGCCACGTCTTTGACGACGGCCCAGCTCCCACGGGGA
AGCGGTACTGTATGAACGCGGCGGCCATGCGGTTCGTGCCACGGGAGGAG
GTGGACGGATGGATGGCCAGCTTGCCCAAGGCGAAGTAAAGGAGGGCGGG
A
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protein sequence of rna5130

>rna5130-protein ID=rna5130-protein|Name=rna5130|organism=Nannochloropsis gaditana|type=polypeptide|length=256bp
MASPRPASCTPFLSEGCLLSYKDIGAEDCPGSASPHGSDLGTEGQSFTPL
TTWMAHQCVLDRQGMEGVEVKTPPLQCLGGGVPAPLLRTALAKIQQDLEL
DEEGGKAEGHGHNSDVEGTLHLSSHGGPVSRATGFASASAGHSGITLSPE
GAGWGPAFASSCSLDSLTTDIMAGTDGLLTPDMLGGLGPWQTSPRFLGEG
VGLREGKEGEGWELGETCEGNEEDEAAGGVREEAAPCGALPSSSCLYLPA
PASPPP
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mRNA from alignment at CM002465.1:197150..198593+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5130 ID=rna5130|Name=rna5130|organism=Nannochloropsis gaditana|type=mRNA|length=1444bp|location=Sequence derived from alignment at CM002465.1:197150..198593+ (Nannochloropsis gaditana)
AATGACACCTTTTCCCCCAATGCacacgcctccccccctaaaaaaagcct
catcctcctcataACTTGGGTCTCTCAACATTTTGCATGATGACACACGC
TTTTGTCCGTGTCTTTGGCCACCAAAATTTCTTTCGTTTCCCACGCAGTC
TGGCACGAAACCTTTGCTTGTGTTTTTCAGCGAGATTGATCCTATCAAGG
AGtcgactccctccttcttatGCCTGAATCCCAAATGGCACGGCGACCGC
GGTGTGGCGCGGTTACGTCGGATGGGCTCTGTCGCATGGATAGGATTTTA
GACGCATGACTCGGTGGTGATGGGCAATGTTTCTCAGTCGGATCCTAATA
AACATCAAACATCCGATCCCGATTAAGTGTATGCTCCAATCCTCGAGTGT
TTCGTGTCCGAGGCCTACCACTCTGTTGGCCTGGAGGGTTGATGCAGGAT
CTTTGAGAAGCGGGAATTTATAGATTTTTGAGCAACTGGATGGTGGTGGT
CAAATCTTTGCTTCGAATTAGGTAACTGAGCACGCTATGTTCCTGCCCAC
GCTtaccatcccccttcctcaaaCCCTTCCCTCTATTCcatcctcccact
ccatcTTTGTTTGCAAAACGTACTGAATCTtcggctcctgctcctgccct
tcctctctttccattttcttttaGATGGCGTCCCCCCGTCCTGCCTCTTG
CACACCTTTCCTTTCGGAGGGATGCCTGCTATCCTACAAGGACATTGGTG
CTGAGGATTGCCCCGGCAGTGCGAGCCCCCACGGCAGCGATCTCGGCACC
GAAGGCCAGTCCTTCACGCCTCTTACAACATGGATGGCGCACCAATGCGT
CCTGGACCggcaagggatggagggcgtggaggtgaaAACCCCACCGTTGC
AGTgtctcggggggggggtacctgcccctctcctgcgCACCGCCTTGGCG
AAAATCCAGCAAGATCTCGAGTtggacgaagaagggggcaaAGCGGAGGG
GCATGGGCACAATTCCGACGTGGAGGGCACGTTGCATTTGTCAAGTCATG
GTGGCCCTGTTTCCCGTGCCACGGGTTTCGCGAGTGCCAGTGCTGGCCAT
TCGGGTATCACCCTGTcgccggagggggcgggctggGGTCCGGCGTTTGC
CTCGTCCTGCTCGCTCGACTCACTCACCACGGACATCATGGCGGGTACCG
ACGGCCTCCTAACGCCAGACATGCTGGGTGGCCTGGGGCCCTGGCAGACG
TCTCCGAGGttcctgggcgagggggtcgggctgagggagggaaaggaggg
cgaagggtgGGAGCTGGGAGAGACCTGtgaggggaacgaggaggacgagg
cggcgggTGGCGTCCGAGAAGAGGCCGCTCCCTGCGGCGcccttccttcg
tcctcgtgcCTCTatctccctgcccccgcctccccccccccctt
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Coding sequence (CDS) from alignment at CM002465.1:197150..198593+

>rna5130 ID=rna5130|Name=rna5130|organism=Nannochloropsis gaditana|type=CDS|length=770bp|location=Sequence derived from alignment at CM002465.1:197150..198593+ (Nannochloropsis gaditana)
ATGGCGTCCCCCCGTCCTGCCTCTTGCACACCTTTCCTTTCGGAGGGATG
CCTGCTATCCTACAAGGACATTGGTGCTGAGGATTGCCCCGGCAGTGCGA
GCCCCCACGGCAGCGATCTCGGCACCGAAGGCCAGTCCTTCACGCCTCTT
ACAACATGGATGGCGCACCAATGCGTCCTGGACCggcaagggatggaggg
cgtggaggtgaaAACCCCACCGTTGCAGTgtctcggggggggggtacctg
cccctctcctgcgCACCGCCTTGGCGAAAATCCAGCAAGATCTCGAGTtg
gacgaagaagggggcaaAGCGGAGGGGCATGGGCACAATTCCGACGTGGA
GGGCACGTTGCATTTGTCAAGTCATGGTGGCCCTGTTTCCCGTGCCACGG
GTTTCGCGAGTGCCAGTGCTGGCCATTCGGGTATCACCCTGTcgccggag
ggggcgggctggGGTCCGGCGTTTGCCTCGTCCTGCTCGCTCGACTCACT
CACCACGGACATCATGGCGGGTACCGACGGCCTCCTAACGCCAGACATGC
TGGGTGGCCTGGGGCCCTGGCAGACGTCTCCGAGGttcctgggcgagggg
gtcgggctgagggagggaaaggagggcgaagggtgGGAGCTGGGAGAGAC
CTGtgaggggaacgaggaggacgaggcggcgggTGGCGTCCGAGAAGAGG
CCGCTCCCTGCGGCGcccttccttcgtcctcgtgcCTCTatctccctgcc
cccgcctccccccccccctt
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Synonyms
Publications