rna5129, rna5129 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5129
Unique Name	rna5129
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1014
Alignment location	CM002465.1:196002..197052 -

Link to JBrowse

Properties


Property Name	Value
Product	peptide methionine sulfoxide reductase
Orig transcript id	gnl\|cribi\|Naga_101420g2.8852.mrna
Orig protein id	gnl\|cribi\|Naga_101420g2.8852
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:196002..197052 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101420g2	gene4950	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25556.1	cds5117	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5129	rna5129-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:196002..197052-
coding sequence from alignment at CM002465.1:196002..197052-

mRNA sequence

>rna5129 ID=rna5129|Name=rna5129|organism=Nannochloropsis gaditana|type=mRNA|length=1014bp
GACAATCGTCACTGAGAAGATAGGACGAGCTCTCCAATAAAGCATGTCCT
CAATACCATGCGCCAGTTTTTCATTTTGGAGCCCCTTTCCGACCACCATA
GGCTACCAGGTGTGGTGCCAGACAAAGTGGGGAGCATTTGTGACCTTGCT
GCTGCGTGGACTTGTACAGACGACGTCATGGACAATGGAACAACAAGCAG
CAGTAGTAGCAGCATTAGTAGCACTAACGGGCAGGACCACCCCTTGCAGC
AACCCTGGCAGCTTTATCTTCATTACCCGACAGTAACACAAGCTCTAGAG
AGCTACGGGAAGGAGGCGTACCAAGCGTTGTGCGAGTTTTCGACCGTCGA
AGGGTTCTGGACCTACTTTTACCACCTACCCAAGCCTAGCGACGTCTTCA
CTGAAATGGTCCCCGGCTCTCAACCCGCACAATTGTCGAGACGTAAGCTG
GACGGAAAGAACCTGGAGGCGTTTGGACTGTTTAAGAAGGGCGTGAAGCC
AGAATGGGAAGACGCACTGAACCTGAAGGGGGGGCATTGGGAGTGCCGGC
GAGACTTCGACCTGCCAAGCTTGGACCGGATGTGGACGAGCACCGTCCTG
GCCTTGATTGGGGAGACGCTGGAGGACGGAAGCGTGATCACGGGGGCGCG
GGTGGTGGACAAGTGCAAGTTCAAGCGGGCTGAGTACCGTTTGGAGCTGT
GGACGTCGACGAAGGAGGCGGGGGTCAATGACGAGATTCGGAAGAGGCTG
CGGGAGGCGATGAAGGAGGGGCTGGTGGAGGGAGGGATGGAGGCAGGTGT
AGTCCCCGACTTCGTGTGGAAGGACCACTCGGAGAGCGTGGTGACGGCGA
GCGAGGGCTACAGTGGGTCCACCACCTCGCTGAGCGTGAGTACGGGGAGG
GAAGGGGGAGGGGGCGGCGGGGTGGGAGGGGGAGAAGGGAGAGGTGCCAG
CGGTTTATCCAGCGCGATGCGAGATAAGGTGTTTGGGAAGGTGAAAGCTT
GAAAGAGAGGGAGG

protein sequence of rna5129

>rna5129-protein ID=rna5129-protein|Name=rna5129|organism=Nannochloropsis gaditana|type=polypeptide|length=282bp
MRLLQIQPVSLFLLGLALSPMRRATAFSFPRRVSRAASTSSSSSSSSSSS
SSSSSSSPNSVQATPKSNEPTRRAVIAKWLGGVGLSVAATAALGTLFFPR
RPLETQAAEMSAPAATPRSSMGLDLTPLSTNEALKAADKLKLSKQERRIL
FEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWP
SFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPA
PTGKRYCMNAAAMRFVPREEVDGWMASLPKAK

mRNA from alignment at CM002465.1:196002..197052-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5129 ID=rna5129|Name=rna5129|organism=Nannochloropsis gaditana|type=mRNA|length=1051bp|location=Sequence derived from alignment at CM002465.1:196002..197052- (Nannochloropsis gaditana)
GGCTTGCCACAAAGAAAACGGCAATGTTTATTGACACCATAGCTTGCTTT
GATGTGATAACATAGATGTGTCGAGATCGTGTGCTTGTGGCTTCGCGAAA
CACAAGTATTCGATATGAGCGATATAGAAGCTACTGTGGAGATGACTCAC
AGGAGGCAATCGGCCCGCTATCTCTTCAACCGACACAGGCATGCGCCTCC
TTCAAATCCAGCCTGTCTCTCTCTTTCTACTAGGTCTCGCCTTATCTCCC
ATGCGACGGGCAACAGCCTTTTCTTTCCCCCGCCGCGTTTCCCGTGCTGC
TTCGACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCTTCCCCTAACTCCGTCCAAGCCACTCCCAAGTCCAATGAACCA
ACCCGTCGTGCTGTCATCGCCAAATGGCTTGGCGGCGTTGGGCTTAGCGT
GGCGGCCACTGCCGCGCTGGGTACCCTTTTCTTTCCCCGGCGTCCTCTAG
AAACGCAGGCCGCGGAAATGTCTGCCCCTGCAGCCACTCCCCGAAGCTCA
ATGGGCTTGGACCTGACCCCTTTGTCTACGAACGAGGCTTTGAAAGCCGC
CGACAAGCTCAAGCTGAGCAAGCAAGAACGGAGAATACTCTTCGAGGCGG
GCACGGAGATGCCAGGCTCGGGAATGACGGCCAATGGGGTCAAGTACAGC
AGTAAAGCTGATGGCCTGTGGGTGTCGGCGCTTAGCGGCGTGCCACTCTT
CGACGCAAAGGCGAAATACAACAGTGGCACAGGCTGGCCCTCCTTCACCC
AGGTGGTGGATCCGGCCCACGTGATCGAACGGGTGGACCCTCGGGACGTG
GACGGGAAGCCCCAGTTCCTATGGCGGGTGGAGGTGCTCGACCGAAAGAG
CGGTACCCACCTCGGCCACGTCTTTGACGACGGCCCAGCTCCCACGGGGA
AGCGGTACTGTATGAACGCGGCGGCCATGCGGTTCGTGCCACGGGAGGAG
GTGGACGGATGGATGGCCAGCTTGCCCAAGGCGAAGTAAAGGAGGGCGGG
A

Coding sequence (CDS) from alignment at CM002465.1:196002..197052-

>rna5129 ID=rna5129|Name=rna5129|organism=Nannochloropsis gaditana|type=CDS|length=849bp|location=Sequence derived from alignment at CM002465.1:196002..197052- (Nannochloropsis gaditana)
ATGCGCCTCCTTCAAATCCAGCCTGTCTCTCTCTTTCTACTAGGTCTCGC
CTTATCTCCCATGCGACGGGCAACAGCCTTTTCTTTCCCCCGCCGCGTTT
CCCGTGCTGCTTCGACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCTTCCCCTAACTCCGTCCAAGCCACTCCCAAGTC
CAATGAACCAACCCGTCGTGCTGTCATCGCCAAATGGCTTGGCGGCGTTG
GGCTTAGCGTGGCGGCCACTGCCGCGCTGGGTACCCTTTTCTTTCCCCGG
CGTCCTCTAGAAACGCAGGCCGCGGAAATGTCTGCCCCTGCAGCCACTCC
CCGAAGCTCAATGGGCTTGGACCTGACCCCTTTGTCTACGAACGAGGCTT
TGAAAGCCGCCGACAAGCTCAAGCTGAGCAAGCAAGAACGGAGAATACTC
TTCGAGGCGGGCACGGAGATGCCAGGCTCGGGAATGACGGCCAATGGGGT
CAAGTACAGCAGTAAAGCTGATGGCCTGTGGGTGTCGGCGCTTAGCGGCG
TGCCACTCTTCGACGCAAAGGCGAAATACAACAGTGGCACAGGCTGGCCC
TCCTTCACCCAGGTGGTGGATCCGGCCCACGTGATCGAACGGGTGGACCC
TCGGGACGTGGACGGGAAGCCCCAGTTCCTATGGCGGGTGGAGGTGCTCG
ACCGAAAGAGCGGTACCCACCTCGGCCACGTCTTTGACGACGGCCCAGCT
CCCACGGGGAAGCGGTACTGTATGAACGCGGCGGCCATGCGGTTCGTGCC
ACGGGAGGAGGTGGACGGATGGATGGCCAGCTTGCCCAAGGCGAAGTAA

Synonyms

Publications