EWM25556.1, cds5117 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25556.1 vs. NCBI_GenBank
Match: gi|585107328|gb|EWM25556.1| (peptide methionine sulfoxide reductase [Nannochloropsis gaditana]) HSP 1 Score: 567 bits (1460), Expect = 0.000e+0 Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0 Query: 1 MRLLQIQPVSLFLLGLALSPMRRATAFSFPRRVSRAASTSSSSSSSSSSSSSSSSSSPNSVQATPKSNEPTRRAVIAKWLGGVGLSVAATAALGTLFFPRRPLETQAAEMSAPAATPRSSMGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVPREEVDGWMASLPKAK 282 MRLLQIQPVSLFLLGLALSPMRRATAFSFPRRVSRAASTSSSSSSSSSSSSSSSSSSPNSVQATPKSNEPTRRAVIAKWLGGVGLSVAATAALGTLFFPRRPLETQAAEMSAPAATPRSSMGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVPREEVDGWMASLPKAK Sbjct: 1 MRLLQIQPVSLFLLGLALSPMRRATAFSFPRRVSRAASTSSSSSSSSSSSSSSSSSSPNSVQATPKSNEPTRRAVIAKWLGGVGLSVAATAALGTLFFPRRPLETQAAEMSAPAATPRSSMGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVPREEVDGWMASLPKAK 282
BLAST of EWM25556.1 vs. NCBI_GenBank
Match: gi|553192204|ref|XP_005855531.1| (methionine sulfoxide reductase b, partial [Nannochloropsis gaditana CCMP526] >gi|422293525|gb|EKU20825.1| methionine sulfoxide reductase b, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 302.753 bits (774), Expect = 6.907e-102 Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 Query: 121 MGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAM 263 MGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANG+KYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAM Sbjct: 1 MGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGIKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAM 143
BLAST of EWM25556.1 vs. NCBI_GenBank
Match: gi|298714570|emb|CBJ27561.1| (Methionine-R-sulfoxide reductase [Ectocarpus siliculosus]) HSP 1 Score: 204.912 bits (520), Expect = 6.101e-62 Identity = 113/223 (50.67%), Postives = 139/223 (62.33%), Query Frame = 0 Query: 51 SSSSSSSPNSVQATPKSNEPTRRAVI---AKWLGGVGLSVAATAALGTLFFPRRPLETQAAEMSAPAATPRSSMGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVPREE 270 SSS S +P S +R+A++ A L +GL AA + +G RP AA P S G DL PL+ E DKL ++ ++ +L +AGTE P G T NG KA+G WVSA+SGVPLF + KY+SGTGWPSF +DP HVIERVDP+D P+FL RVEVLDRKSGTHLGHVF+DGP PTGKRYCMNAA+M F+P+EE Sbjct: 23 SSSRSVTPTMSHGQRGSGPVSRQALLKTGAAGLASLGLWFAAGSDVG------RPQAAFAAPRVGSGGPPFSKSGYDLDPLTAEEVDARVDKL--TELQKVVLTQAGTERPFQGKTVNGYNGGIKAEGTWVSAVSGVPLFSSDTKYDSGTGWPSFYAPIDPEHVIERVDPKDAASMPKFLQRVEVLDRKSGTHLGHVFNDGPKPTGKRYCMNAASMAFIPKEE 237
BLAST of EWM25556.1 vs. NCBI_GenBank
Match: gi|1129214177|gb|OLQ14971.1| (Peptide methionine sulfoxide reductase MsrB [Symbiodinium microadriaticum]) HSP 1 Score: 173.711 bits (439), Expect = 3.882e-50 Identity = 96/203 (47.29%), Postives = 120/203 (59.11%), Query Frame = 0 Query: 71 TRRAVIAKWLGGVGLSVAATAALGTLFFPRRPLETQAAEMSAPAATPRSSMGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVPREEVDG 273 TRR + A VGL A + P RP PR+ +++ + EA K+ LSK E+R+L EA TE +G T NG + +K +G +VS +SG PLF +KAKYNSGTGWPSF V V+ER DP D+D P+ WR EVLDR SGTHLGHVFDDGP PTGKRYC+NAAA++FVP +G Sbjct: 8 TRRVLPAALALVVGLVSFDAAFIAPGASPSRPAMPHLERAGPLVLAPRARAVEEMSDAAVTEAAKS-----LSKFEQRVLLEAATEPAFTGKTTNGFAWDNKEEGTYVSPISGEPLFSSKAKYNSGTGWPSFWAPVSSDTVLERTDPGDMDNLPKMFWRTEVLDRASGTHLGHVFDDGPPPTGKRYCINAAALKFVPGTAPEG 205
BLAST of EWM25556.1 vs. NCBI_GenBank
Match: gi|873223353|emb|CEM29185.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 172.94 bits (437), Expect = 1.056e-49 Identity = 86/153 (56.21%), Postives = 107/153 (69.93%), Query Frame = 0 Query: 119 SSMGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVPREEV 271 S G D+TP++ E KAA L + ++ I +AGTEM +G T NG K+++K G+WV A+SG+PLF + KY+SGTGW SF + VDP HVIER DP+D+ P F R EVLD KSG HLGHVFDDGP P KRYCMNAA+M+FVP E V Sbjct: 77 SKSGYDVTPMTDEEVQKAAQGL--TSKQYDINLKAGTEMAFTGETVNGYKWNTKEKGMWVGAISGLPLFSSDDKYDSGTGWLSFLKPVDPMHVIERKDPKDMAFGP-FERRTEVLDAKSGAHLGHVFDDGPPPLKKRYCMNAASMKFVPAEPV 226
BLAST of EWM25556.1 vs. NCBI_GenBank
Match: gi|1004136208|gb|KXZ44249.1| (hypothetical protein GPECTOR_70g480 [Gonium pectorale]) HSP 1 Score: 159.844 bits (403), Expect = 4.843e-45 Identity = 83/157 (52.87%), Postives = 106/157 (67.52%), Query Frame = 0 Query: 116 TPR--SSMGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVPREE 270 TPR S G D+TPLS EA +AA L+ ++ + EAGTE +G T NG + +K G++VSA+ G+PLF + K+NSGTGWPSF VDP H+IE D ++ RVEVLD +SG HLGHVFDDGPAPTGKRYC+NAAA++F+P E Sbjct: 31 TPRKISRSGYDVTPLS--EAERAAAAQGLTSFQQHVTMEAGTERAFTGKTVNGYSHDNKQRGVYVSAVGGLPLFTSDTKFNSGTGWPSFFAPVDPDHIIEVTDY-----SIPYMPRVEVLDARSGAHLGHVFDDGPAPTGKRYCINAAALKFIPAGE 180
BLAST of EWM25556.1 vs. NCBI_GenBank
Match: gi|760441187|ref|XP_011397662.1| (Peptide methionine sulfoxide reductase MsrB [Auxenochlorella protothecoides] >gi|675352334|gb|KFM24774.1| Peptide methionine sulfoxide reductase MsrB [Auxenochlorella protothecoides]) HSP 1 Score: 157.918 bits (398), Expect = 2.277e-44 Identity = 82/159 (51.57%), Postives = 103/159 (64.78%), Query Frame = 0 Query: 111 SAPAATPR--SSMGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVP 267 SA A PR S G D+TPL+ + AA L+ +R + +GTE +G T +G + SKA GL+VSA+ G+PLF + K++SGTGWPSF VDP HVIE D F+ R EVLD +SG HLGHVF+DGP PTGKRYCMNAAA+RF+P Sbjct: 18 SATADAPRRISKSGYDITPLTAEQREAAA--AGLTPHQRDVALASGTERAFTGKTVDGTPHDSKAKGLYVSAVGGLPLFSSDTKFDSGTGWPSFYTPVDPDHVIEV-----TDASIPFMVRTEVLDARSGAHLGHVFNDGPRPTGKRYCMNAAALRFIP 169
BLAST of EWM25556.1 vs. NCBI_GenBank
Match: gi|159470275|ref|XP_001693285.1| (predicted protein [Chlamydomonas reinhardtii] >gi|158277543|gb|EDP03311.1| predicted protein, partial [Chlamydomonas reinhardtii]) HSP 1 Score: 155.992 bits (393), Expect = 5.704e-44 Identity = 75/148 (50.68%), Postives = 100/148 (67.57%), Query Frame = 0 Query: 123 LDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVPREE 270 D+TPL+ E +AA+ L + ++ + E GTE +G T NG + +K G +V AL G+PLF + K+NSGTGWPSF +DPAH++E VD ++ RVEVLD +SG HLGHVFDDGPAPTGKRYC+NAAA++F+P E Sbjct: 1 YDVTPLTAEERQRAAEGL--TDFQKYVTLEHGTERAFTGKTVNGYTHDNKQRGTYVCALGGLPLFSSDTKFNSGTGWPSFFAPIDPAHIVEVVD-----MSIPYMPRVEVLDARSGAHLGHVFDDGPAPTGKRYCINAAALKFIPAGE 141
BLAST of EWM25556.1 vs. NCBI_GenBank
Match: gi|302851308|ref|XP_002957178.1| (hypothetical protein VOLCADRAFT_121603 [Volvox carteri f. nagariensis] >gi|300257428|gb|EFJ41676.1| hypothetical protein VOLCADRAFT_121603 [Volvox carteri f. nagariensis]) HSP 1 Score: 157.918 bits (398), Expect = 8.252e-44 Identity = 81/159 (50.94%), Postives = 105/159 (66.04%), Query Frame = 0 Query: 114 AATPR--SSMGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVPREE 270 A TPR S G D+TPLS E AA+ L + ++ + E GTE +G T NG + +K G++VSAL G+PLF + K+NSGTGWPSF +DP H+IE D ++ R+EVLD +SG HLGHVFDDGPAPTGKRYC+NAAA++F+P E Sbjct: 71 ADTPRKVSRSGYDVTPLSDEERRAAAEGL--TPFQKHVTLEHGTERAFTGSTVNGYSHDNKQRGVYVSALGGLPLFSSDTKFNSGTGWPSFFAPLDPDHIIEVPD-----YSIPYMPRIEVLDARSGAHLGHVFDDGPAPTGKRYCINAAALKFIPAGE 222
BLAST of EWM25556.1 vs. NCBI_GenBank
Match: gi|545375756|ref|XP_005652026.1| (methionine-R-sulfoxide reductase [Coccomyxa subellipsoidea C-169] >gi|384254008|gb|EIE27482.1| methionine-R-sulfoxide reductase [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 156.762 bits (395), Expect = 2.007e-43 Identity = 75/152 (49.34%), Postives = 100/152 (65.79%), Query Frame = 0 Query: 119 SSMGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVPREE 270 S +G D+TPL+ + + A K+ R I EAGTE +G T NG + +K +G+WVSA+ G+PLF + K++SGTGWPSF +DP HVIE D F+ R EV+D +SG HLGHVF+DGP PTGKRYCMNA A++F+P+ E Sbjct: 66 SKLGYDITPLTQGKLKEEA--AKVDANTRYIALEAGTERAFTGKTINGYSHDNKKEGVWVSAIGGLPLFSSDTKFDSGTGWPSFYAPIDPEHVIEV-----KDSSIPFMPRTEVIDARSGAHLGHVFNDGPRPTGKRYCMNAGALKFIPKGE 210 The following BLAST results are available for this feature:
BLAST of EWM25556.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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