EWM25556.1, cds5117 (CDS) Nannochloropsis gaditana

Overview
NameEWM25556.1
Unique Namecds5117
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:196014..196862 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25556.1
Productpeptide methionine sulfoxide reductase
Orig transcript idgnl|cribi|Naga_101420g2.8852.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:196014..196862 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0009987cellular process
GO:0019538protein metabolic process
GO:0030091protein repair
GO:0006979response to oxidative stress
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0016671oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
GO:0033743peptide-methionine (R)-S-oxide reductase activity
Vocabulary: INTERPRO
TermDefinition
IPR011057Mss4-like
IPR028427Met_Sox_Rdtase
IPR002579Met_Sox_Rdtase_MsrB
Homology
BLAST of EWM25556.1 vs. NCBI_GenBank
Match: gi|585107328|gb|EWM25556.1| (peptide methionine sulfoxide reductase [Nannochloropsis gaditana])

HSP 1 Score: 567 bits (1460), Expect = 0.000e+0
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0
Query:    1 MRLLQIQPVSLFLLGLALSPMRRATAFSFPRRVSRAASTSSSSSSSSSSSSSSSSSSPNSVQATPKSNEPTRRAVIAKWLGGVGLSVAATAALGTLFFPRRPLETQAAEMSAPAATPRSSMGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVPREEVDGWMASLPKAK 282
            MRLLQIQPVSLFLLGLALSPMRRATAFSFPRRVSRAASTSSSSSSSSSSSSSSSSSSPNSVQATPKSNEPTRRAVIAKWLGGVGLSVAATAALGTLFFPRRPLETQAAEMSAPAATPRSSMGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVPREEVDGWMASLPKAK
Sbjct:    1 MRLLQIQPVSLFLLGLALSPMRRATAFSFPRRVSRAASTSSSSSSSSSSSSSSSSSSPNSVQATPKSNEPTRRAVIAKWLGGVGLSVAATAALGTLFFPRRPLETQAAEMSAPAATPRSSMGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVPREEVDGWMASLPKAK 282          
BLAST of EWM25556.1 vs. NCBI_GenBank
Match: gi|553192204|ref|XP_005855531.1| (methionine sulfoxide reductase b, partial [Nannochloropsis gaditana CCMP526] >gi|422293525|gb|EKU20825.1| methionine sulfoxide reductase b, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 302.753 bits (774), Expect = 6.907e-102
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0
Query:  121 MGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAM 263
            MGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANG+KYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAM
Sbjct:    1 MGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGIKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAM 143          
BLAST of EWM25556.1 vs. NCBI_GenBank
Match: gi|298714570|emb|CBJ27561.1| (Methionine-R-sulfoxide reductase [Ectocarpus siliculosus])

HSP 1 Score: 204.912 bits (520), Expect = 6.101e-62
Identity = 113/223 (50.67%), Postives = 139/223 (62.33%), Query Frame = 0
Query:   51 SSSSSSSPNSVQATPKSNEPTRRAVI---AKWLGGVGLSVAATAALGTLFFPRRPLETQAAEMSAPAATPRSSMGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVPREE 270
            SSS S +P        S   +R+A++   A  L  +GL  AA + +G      RP    AA        P S  G DL PL+  E     DKL  ++ ++ +L +AGTE P  G T NG     KA+G WVSA+SGVPLF +  KY+SGTGWPSF   +DP HVIERVDP+D    P+FL RVEVLDRKSGTHLGHVF+DGP PTGKRYCMNAA+M F+P+EE
Sbjct:   23 SSSRSVTPTMSHGQRGSGPVSRQALLKTGAAGLASLGLWFAAGSDVG------RPQAAFAAPRVGSGGPPFSKSGYDLDPLTAEEVDARVDKL--TELQKVVLTQAGTERPFQGKTVNGYNGGIKAEGTWVSAVSGVPLFSSDTKYDSGTGWPSFYAPIDPEHVIERVDPKDAASMPKFLQRVEVLDRKSGTHLGHVFNDGPKPTGKRYCMNAASMAFIPKEE 237          
BLAST of EWM25556.1 vs. NCBI_GenBank
Match: gi|1129214177|gb|OLQ14971.1| (Peptide methionine sulfoxide reductase MsrB [Symbiodinium microadriaticum])

HSP 1 Score: 173.711 bits (439), Expect = 3.882e-50
Identity = 96/203 (47.29%), Postives = 120/203 (59.11%), Query Frame = 0
Query:   71 TRRAVIAKWLGGVGLSVAATAALGTLFFPRRPLETQAAEMSAPAATPRSSMGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVPREEVDG 273
            TRR + A     VGL     A +     P RP              PR+    +++  +  EA K+     LSK E+R+L EA TE   +G T NG  + +K +G +VS +SG PLF +KAKYNSGTGWPSF   V    V+ER DP D+D  P+  WR EVLDR SGTHLGHVFDDGP PTGKRYC+NAAA++FVP    +G
Sbjct:    8 TRRVLPAALALVVGLVSFDAAFIAPGASPSRPAMPHLERAGPLVLAPRARAVEEMSDAAVTEAAKS-----LSKFEQRVLLEAATEPAFTGKTTNGFAWDNKEEGTYVSPISGEPLFSSKAKYNSGTGWPSFWAPVSSDTVLERTDPGDMDNLPKMFWRTEVLDRASGTHLGHVFDDGPPPTGKRYCINAAALKFVPGTAPEG 205          
BLAST of EWM25556.1 vs. NCBI_GenBank
Match: gi|873223353|emb|CEM29185.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 172.94 bits (437), Expect = 1.056e-49
Identity = 86/153 (56.21%), Postives = 107/153 (69.93%), Query Frame = 0
Query:  119 SSMGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVPREEV 271
            S  G D+TP++  E  KAA  L  + ++  I  +AGTEM  +G T NG K+++K  G+WV A+SG+PLF +  KY+SGTGW SF + VDP HVIER DP+D+   P F  R EVLD KSG HLGHVFDDGP P  KRYCMNAA+M+FVP E V
Sbjct:   77 SKSGYDVTPMTDEEVQKAAQGL--TSKQYDINLKAGTEMAFTGETVNGYKWNTKEKGMWVGAISGLPLFSSDDKYDSGTGWLSFLKPVDPMHVIERKDPKDMAFGP-FERRTEVLDAKSGAHLGHVFDDGPPPLKKRYCMNAASMKFVPAEPV 226          
BLAST of EWM25556.1 vs. NCBI_GenBank
Match: gi|1004136208|gb|KXZ44249.1| (hypothetical protein GPECTOR_70g480 [Gonium pectorale])

HSP 1 Score: 159.844 bits (403), Expect = 4.843e-45
Identity = 83/157 (52.87%), Postives = 106/157 (67.52%), Query Frame = 0
Query:  116 TPR--SSMGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVPREE 270
            TPR  S  G D+TPLS  EA +AA    L+  ++ +  EAGTE   +G T NG  + +K  G++VSA+ G+PLF +  K+NSGTGWPSF   VDP H+IE  D         ++ RVEVLD +SG HLGHVFDDGPAPTGKRYC+NAAA++F+P  E
Sbjct:   31 TPRKISRSGYDVTPLS--EAERAAAAQGLTSFQQHVTMEAGTERAFTGKTVNGYSHDNKQRGVYVSAVGGLPLFTSDTKFNSGTGWPSFFAPVDPDHIIEVTDY-----SIPYMPRVEVLDARSGAHLGHVFDDGPAPTGKRYCINAAALKFIPAGE 180          
BLAST of EWM25556.1 vs. NCBI_GenBank
Match: gi|760441187|ref|XP_011397662.1| (Peptide methionine sulfoxide reductase MsrB [Auxenochlorella protothecoides] >gi|675352334|gb|KFM24774.1| Peptide methionine sulfoxide reductase MsrB [Auxenochlorella protothecoides])

HSP 1 Score: 157.918 bits (398), Expect = 2.277e-44
Identity = 82/159 (51.57%), Postives = 103/159 (64.78%), Query Frame = 0
Query:  111 SAPAATPR--SSMGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVP 267
            SA A  PR  S  G D+TPL+  +   AA    L+  +R +   +GTE   +G T +G  + SKA GL+VSA+ G+PLF +  K++SGTGWPSF   VDP HVIE       D    F+ R EVLD +SG HLGHVF+DGP PTGKRYCMNAAA+RF+P
Sbjct:   18 SATADAPRRISKSGYDITPLTAEQREAAA--AGLTPHQRDVALASGTERAFTGKTVDGTPHDSKAKGLYVSAVGGLPLFSSDTKFDSGTGWPSFYTPVDPDHVIEV-----TDASIPFMVRTEVLDARSGAHLGHVFNDGPRPTGKRYCMNAAALRFIP 169          
BLAST of EWM25556.1 vs. NCBI_GenBank
Match: gi|159470275|ref|XP_001693285.1| (predicted protein [Chlamydomonas reinhardtii] >gi|158277543|gb|EDP03311.1| predicted protein, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 155.992 bits (393), Expect = 5.704e-44
Identity = 75/148 (50.68%), Postives = 100/148 (67.57%), Query Frame = 0
Query:  123 LDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVPREE 270
             D+TPL+  E  +AA+ L  +  ++ +  E GTE   +G T NG  + +K  G +V AL G+PLF +  K+NSGTGWPSF   +DPAH++E VD         ++ RVEVLD +SG HLGHVFDDGPAPTGKRYC+NAAA++F+P  E
Sbjct:    1 YDVTPLTAEERQRAAEGL--TDFQKYVTLEHGTERAFTGKTVNGYTHDNKQRGTYVCALGGLPLFSSDTKFNSGTGWPSFFAPIDPAHIVEVVD-----MSIPYMPRVEVLDARSGAHLGHVFDDGPAPTGKRYCINAAALKFIPAGE 141          
BLAST of EWM25556.1 vs. NCBI_GenBank
Match: gi|302851308|ref|XP_002957178.1| (hypothetical protein VOLCADRAFT_121603 [Volvox carteri f. nagariensis] >gi|300257428|gb|EFJ41676.1| hypothetical protein VOLCADRAFT_121603 [Volvox carteri f. nagariensis])

HSP 1 Score: 157.918 bits (398), Expect = 8.252e-44
Identity = 81/159 (50.94%), Postives = 105/159 (66.04%), Query Frame = 0
Query:  114 AATPR--SSMGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVPREE 270
            A TPR  S  G D+TPLS  E   AA+ L  +  ++ +  E GTE   +G T NG  + +K  G++VSAL G+PLF +  K+NSGTGWPSF   +DP H+IE  D         ++ R+EVLD +SG HLGHVFDDGPAPTGKRYC+NAAA++F+P  E
Sbjct:   71 ADTPRKVSRSGYDVTPLSDEERRAAAEGL--TPFQKHVTLEHGTERAFTGSTVNGYSHDNKQRGVYVSALGGLPLFSSDTKFNSGTGWPSFFAPLDPDHIIEVPD-----YSIPYMPRIEVLDARSGAHLGHVFDDGPAPTGKRYCINAAALKFIPAGE 222          
BLAST of EWM25556.1 vs. NCBI_GenBank
Match: gi|545375756|ref|XP_005652026.1| (methionine-R-sulfoxide reductase [Coccomyxa subellipsoidea C-169] >gi|384254008|gb|EIE27482.1| methionine-R-sulfoxide reductase [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 156.762 bits (395), Expect = 2.007e-43
Identity = 75/152 (49.34%), Postives = 100/152 (65.79%), Query Frame = 0
Query:  119 SSMGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVPREE 270
            S +G D+TPL+  +  + A   K+    R I  EAGTE   +G T NG  + +K +G+WVSA+ G+PLF +  K++SGTGWPSF   +DP HVIE       D    F+ R EV+D +SG HLGHVF+DGP PTGKRYCMNA A++F+P+ E
Sbjct:   66 SKLGYDITPLTQGKLKEEA--AKVDANTRYIALEAGTERAFTGKTINGYSHDNKKEGVWVSAIGGLPLFSSDTKFDSGTGWPSFYAPIDPEHVIEV-----KDSSIPFMPRTEVIDARSGAHLGHVFNDGPRPTGKRYCMNAGALKFIPKGE 210          
The following BLAST results are available for this feature:
BLAST of EWM25556.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107328|gb|EWM25556.1|0.000e+0100.00peptide methionine sulfoxide reductase [Nannochlor... [more]
gi|553192204|ref|XP_005855531.1|6.907e-10299.30methionine sulfoxide reductase b, partial [Nannoch... [more]
gi|298714570|emb|CBJ27561.1|6.101e-6250.67Methionine-R-sulfoxide reductase [Ectocarpus silic... [more]
gi|1129214177|gb|OLQ14971.1|3.882e-5047.29Peptide methionine sulfoxide reductase MsrB [Symbi... [more]
gi|873223353|emb|CEM29185.1|1.056e-4956.21unnamed protein product [Vitrella brassicaformis C... [more]
gi|1004136208|gb|KXZ44249.1|4.843e-4552.87hypothetical protein GPECTOR_70g480 [Gonium pector... [more]
gi|760441187|ref|XP_011397662.1|2.277e-4451.57Peptide methionine sulfoxide reductase MsrB [Auxen... [more]
gi|159470275|ref|XP_001693285.1|5.704e-4450.68predicted protein [Chlamydomonas reinhardtii] >gi|... [more]
gi|302851308|ref|XP_002957178.1|8.252e-4450.94hypothetical protein VOLCADRAFT_121603 [Volvox car... [more]
gi|545375756|ref|XP_005652026.1|2.007e-4349.34methionine-R-sulfoxide reductase [Coccomyxa subell... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5129rna5129Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications