rna5128, rna5128 (mRNA) Nannochloropsis gaditana

Overview
Namerna5128
Unique Namerna5128
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1350
Alignment locationCM002465.1:194095..195282 +

Link to JBrowse

Properties
Property NameValue
Producteukaryotic translation initiation factor 4e
Orig transcript idgnl|cribi|Naga_100799g1.1576.mrna
Orig protein idgnl|cribi|Naga_100799g1.1576
GeneEIF4E
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:194095..195282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EIF4Egene4949Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5128rna5128-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25557.1cds5116Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5128 ID=rna5128|Name=rna5128|organism=Nannochloropsis gaditana|type=mRNA|length=1350bp
CGCACAGGTCCTGTCTGGCCGCCTCAAGCCATTTATTACGGTTTTTCCAT
CACTCGTCTCAGCCTCGCTAGTCTACAGCAGCAGCCCTCGCCCAAGAGTA
CACTCCGACTTAGGAAGCGCCATCCAGCCCGTTTGCACGGCCGCACACGG
ATGGTTTCTCTATCCATGTGCGTACTATGTCCGCTTCTTCTCCTGGTCGT
CTTTCTGTCAAGTCTTGAAAGGATACAAGCAGCGCGTGGTCCCTCCAAAG
CCCCGGACTTCAATTTTGTGGACGGGCTCCAAACCCTCTTTTTCGCCCTT
TGTTCCGGCGAGCTGCGCACACGTAGGGGTATGGAACAGCACCTGGACCT
CATCTTGTCGTTTATCTCAATGGGACTCTCCATGGGGATTATTGCAGGCG
CCTGCTTCCTGAAGATTCCTCAGCTCCTTACCATCTTGAAGCATCAGAGC
GTGGCCGGCCTTTCCCCTTTGTCCATATATGCGGAAATTACAAGCGGCCT
GGGGATGGTCTTATATAACCTGCACGCGAATACCCCGTTCCTCCACTACG
GAGAAACCGTCGCCGTCCTCTTACAGAACCTCCTCCTCCTCCTCCTCCTC
TGGCGCTACGCCTCCCCTCCAACTTCCCTCTCCGACCGCCTCGTCCCTTC
TGCCATCGTTCTTGCCCTGGGGACCGTGGGCTGGTCCCTCCCAGAACATA
AGGATTGGATCGTCCGGGCTACTCTGCCCCTGGTGGTCGCCATGCGTTTG
CCACAGATCCTGACCAATTGGAGCAACGGGCACACAGGTCAACTCGCCGC
GCTCACCGCCTTGATGGCTTTGGCTGGCTCCCTGGCAAGGCTCTTCACCA
CTCTGAAGGAGCTGGGGTCCAAGGACCCTCAACTACTCGTCTATGCCCTG
AGTTTCTCCTTGAATGCCGTCGTGATGGCGCAGATCGTCTGGTACCGGCA
AGCGACAGCCGAGGCCATGGAGAGCAAGGAGAGGAAGGGAGGGAGGGAGG
GAGGGAAGGAAGGAGGGAGCCCGATGCGGAGATCAGCGAGACTGGAGAAG
AGGAAGGAAGCCTGAGGCGGGTGTACATGGAGACGGCGAAGGAAGTGCTC
ATCCCGCAAGAAGGGAAAATAGACGATTGTGGACCGATCGAGAGGGAAAG
GAAGGAGAGAGACATGTGTATGAATCCTCTTCCAGGCAATGTCTTCCTGT
GACGAAAGCTCCCGTTAGCACCCTCCCCCCTACCGGAAACCTGTCAAACT
AGTCCTCTACCCCTGGTTCTTCCCCCTCCAAAAGGTCAAACAAATGCCTT
GTATGCCTGCATATTCTTCGTCGACCTGCTTGTTTGATTGGCGTCTTTGC
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protein sequence of rna5128

>rna5128-protein ID=rna5128-protein|Name=rna5128|organism=Nannochloropsis gaditana|type=polypeptide|length=314bp
MRQFFILEPLSDHHRLPGVVPDKVGSICDLAAAWTCTDDVMDNGTTSSSS
SSISSTNGQDHPLQQPWQLYLHYPTVTQALESYGKEAYQALCEFSTVEGF
WTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDGKNLEAFGLFKKGVKPEW
EDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDGSVITGARVV
DKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAMKEGLVEGGMEAGVVP
DFVWKDHSESVVTASEGYSGSTTSLSVSTGREGGGGGGVGGGEGRGASGL
SSAMRDKVFGKVKA
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mRNA from alignment at CM002465.1:194095..195282+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5128 ID=rna5128|Name=rna5128|organism=Nannochloropsis gaditana|type=mRNA|length=1188bp|location=Sequence derived from alignment at CM002465.1:194095..195282+ (Nannochloropsis gaditana)
GACAATCGTCACTGAGAAGATAGGACGAGCTCTCCAATAAAGCATGTCCT
CAATACCATGCGCCAGTTTTTCATTTTGGAGCCCCTTTCCGACCACCATA
GGCTACCAGGTGTGGTGCCAGACAAAGTGGGGAGCATTTGTGACCTTGCT
GCTGCGTGGACTTGTACAGACGACGTCATGGACAATGGAACAACAAGCAG
CAGTAGTAGCAGCATTAGTAGCACTAACGGGCAGGACCACCCCTTGCAGC
AACCCTGGCAGCTTTATCTTCATTACCCGACAGTAACACAAGCTCTAGAG
AGctacgggaaggaggcgtaCCAAGCGTTGTGCGAGTTTTCGACCGTCGA
AGGGTTCTGGACCTACTTTTACCACCTACCCAAGCCTAGCGACGTCTTCA
CTGAAATGGTCCCCGGCTCTCAACCCGCACAATTGTCGAGACGTAAGCTG
GACGGAAAGAACCTGGAGGCGTTTGGACTGTTTAAGAAGGTACGTTTGAC
AGCCAcgagtggacgaggacgctcGGCGTACCCTGTCGGGCTACTAGTGC
CGCGTGGAACATGGGATGTCggcttctcttcctcttttacTCTCCCGCAA
GTGCGTGCTTACAGCCGTTGAGCTCATGCAACggtcccttccatccctcg
cATGCACTCCCAGGGCGTGAAGCCAGAATGGGAAGACGCACTGAACCTGA
AGGGGGGGCATTGGGAGTGCCGGCGAGACTTCGACCTGCCAAGCTTGGAC
CGGATGTGGACGAGCACCGTCCTGGCCTTGATTGGGGAGACGCTGGAGGA
CGGAAGCGTGATCACGGGGGCGCGGGTGGTGGACAAGTGCAAGTTCAAGC
GGGCTGAGTACCGTTTGGAGCTGTGGACGTcgacgaaggaggcgggggtc
aATGACGAGATTCGGAAGAGGCTGCGGgaggcgatgaaggaggggctggt
ggagggagggatggaggcaggtGTAGTCCCCGACTTCGTGTGGAAGGACC
ACTCGGAGAGCGTGGTGACGGCGAGCGAGGGCTACAGTGGGTCCACCACC
TCGCTGAGCGTGAgtacggggagggaagggggagggggcggcggggtggg
agggggagaagggagaggtgcCAGCGGTTTATCCAGCGCGATGCGAGATA
AGGTGTTTGGGAAGGTGAAAGCttgaaagagagggagg
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Coding sequence (CDS) from alignment at CM002465.1:194095..195282+

>rna5128 ID=rna5128|Name=rna5128|organism=Nannochloropsis gaditana|type=CDS|length=1890bp|location=Sequence derived from alignment at CM002465.1:194095..195282+ (Nannochloropsis gaditana)
ATGCGCCAGTTTTTCATTTTGGAGCCCCTTTCCGACCACCATAGGCTACC
AGGTGTGGTGCCAGACAAAGTGGGGAGCATTTGTGACCTTGCTGCTGCGT
GGACTTGTACAGACGACGTCATGGACAATGGAACAACAAGCAGCAGTAGT
AGCAGCATTAGTAGCACTAACGGGCAGGACCACCCCTTGCAGCAACCCTG
GCAGCTTTATCTTCATTACCCGACAGTAACACAAGCTCTAGAGAGctacg
ggaaggaggcgtaCCAAGCGTTGTGCGAGTTTTCGACCGTCGAAGGGTTC
TGGACCTACTTTTACCACCTACCCAAGCCTAGCGACGTCTTCACTGAAAT
GGTCCCCGGCTCTCAACCCGCACAATTGTCGAGACGTAAGCTGGACGGAA
AGAACCTGGAGGCGTTTGGACTGTTTAAGAAGGGCGTGAAGCCAGAATGG
GAAGACGCACTGAACCTGAAGGGGGGGCATTGGGAGTGCCGGCGAGACTT
CGACCTGCCAAGCTTGGACCGGATGTGGACGAGCACCGTCCTGGCCTTGA
TTGGGGAGACGCTGGAGGACGGAAGCGTGATCACGGGGGCGCGGGTGGTG
GACAAGTGCAAGTTCAAGCGGGCTGAGTACCGTTTGGAGCTGTGGACGTc
gacgaaggaggcgggggtcaATGACGAGATTCGGAAGAGGCTGCGGgagg
cgatgaaggaggggctggtggagggagggatggaggcaggtGTAGTCCCC
GACTTCGTGTGGAAGGACCACTCGGAGAGCGTGGTGACGGCGAGCGAGGG
CTACAGTGGGTCCACCACCTCGCTGAGCGTGAgtacggggagggaagggg
gagggggcggcggggtgggagggggagaagggagaggtgcCAGCGGTTTA
TCCAGCGCGATGCGAGATAAGGTGTTTGGGAAGGTGAAAGCttgaATGCG
CCAGTTTTTCATTTTGGAGCCCCTTTCCGACCACCATAGGCTACCAGGTG
TGGTGCCAGACAAAGTGGGGAGCATTTGTGACCTTGCTGCTGCGTGGACT
TGTACAGACGACGTCATGGACAATGGAACAACAAGCAGCAGTAGTAGCAG
CATTAGTAGCACTAACGGGCAGGACCACCCCTTGCAGCAACCCTGGCAGC
TTTATCTTCATTACCCGACAGTAACACAAGCTCTAGAGAGctacgggaag
gaggcgtaCCAAGCGTTGTGCGAGTTTTCGACCGTCGAAGGGTTCTGGAC
CTACTTTTACCACCTACCCAAGCCTAGCGACGTCTTCACTGAAATGGTCC
CCGGCTCTCAACCCGCACAATTGTCGAGACGTAAGCTGGACGGAAAGAAC
CTGGAGGCGTTTGGACTGTTTAAGAAGGGCGTGAAGCCAGAATGGGAAGA
CGCACTGAACCTGAAGGGGGGGCATTGGGAGTGCCGGCGAGACTTCGACC
TGCCAAGCTTGGACCGGATGTGGACGAGCACCGTCCTGGCCTTGATTGGG
GAGACGCTGGAGGACGGAAGCGTGATCACGGGGGCGCGGGTGGTGGACAA
GTGCAAGTTCAAGCGGGCTGAGTACCGTTTGGAGCTGTGGACGTcgacga
aggaggcgggggtcaATGACGAGATTCGGAAGAGGCTGCGGgaggcgatg
aaggaggggctggtggagggagggatggaggcaggtGTAGTCCCCGACTT
CGTGTGGAAGGACCACTCGGAGAGCGTGGTGACGGCGAGCGAGGGCTACA
GTGGGTCCACCACCTCGCTGAGCGTGAgtacggggagggaagggggaggg
ggcggcggggtgggagggggagaagggagaggtgcCAGCGGTTTATCCAG
CGCGATGCGAGATAAGGTGTTTGGGAAGGTGAAAGCttga
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Synonyms
Publications