EWM25557.1, cds5116 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25557.1 vs. NCBI_GenBank
Match: gi|585107331|gb|EWM25557.1| (eukaryotic translation initiation factor 4e [Nannochloropsis gaditana]) HSP 1 Score: 646.736 bits (1667), Expect = 0.000e+0 Identity = 314/314 (100.00%), Postives = 314/314 (100.00%), Query Frame = 0
Query: 1 MRQFFILEPLSDHHRLPGVVPDKVGSICDLAAAWTCTDDVMDNGTTSSSSSSISSTNGQDHPLQQPWQLYLHYPTVTQALESYGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDGSVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAMKEGLVEGGMEAGVVPDFVWKDHSESVVTASEGYSGSTTSLSVSTGREGGGGGGVGGGEGRGASGLSSAMRDKVFGKVKA 314
MRQFFILEPLSDHHRLPGVVPDKVGSICDLAAAWTCTDDVMDNGTTSSSSSSISSTNGQDHPLQQPWQLYLHYPTVTQALESYGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDGSVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAMKEGLVEGGMEAGVVPDFVWKDHSESVVTASEGYSGSTTSLSVSTGREGGGGGGVGGGEGRGASGLSSAMRDKVFGKVKA
Sbjct: 1 MRQFFILEPLSDHHRLPGVVPDKVGSICDLAAAWTCTDDVMDNGTTSSSSSSISSTNGQDHPLQQPWQLYLHYPTVTQALESYGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDGSVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAMKEGLVEGGMEAGVVPDFVWKDHSESVVTASEGYSGSTTSLSVSTGREGGGGGGVGGGEGRGASGLSSAMRDKVFGKVKA 314
BLAST of EWM25557.1 vs. NCBI_GenBank
Match: gi|551548317|ref|XP_005761801.1| (hypothetical protein EMIHUDRAFT_414699 [Emiliania huxleyi CCMP1516] >gi|485610679|gb|EOD09372.1| hypothetical protein EMIHUDRAFT_414699 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 137.117 bits (344), Expect = 6.502e-36 Identity = 71/179 (39.66%), Postives = 102/179 (56.98%), Query Frame = 0
Query: 61 HPLQQPWQLYLHY-PTVTQALESYGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDGSVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAMKEG 238
H L+ W ++ H P ++ E + LCE +TVE FW + ++PKPS++F + +R+K + +EAF +FKK +KPEWED N G W CRR F +P LD W VL +IGETL+ G I GARVVDK R YRLELW + ++ E+ +++EA+ +G
Sbjct: 8 HFLESEWVIWEHRAPDKNKSYE----DNMAKLCEVATVEDFWRAWNNIPKPSEIFYD--------GRTRKKFASRTVEAFSVFKKNIKPEWEDPANRSGAEWYCRRAFTMPQLDEFWLHIVLGMIGETLDAGDEICGARVVDKSVNGRTMYRLELWFRKNDDALSKELLAKMQEALGKG 174
BLAST of EWM25557.1 vs. NCBI_GenBank
Match: gi|299117477|emb|CBN73980.1| (eukaryotic translation initiation factor 4E-like 1 [Ectocarpus siliculosus]) HSP 1 Score: 135.576 bits (340), Expect = 3.515e-35 Identity = 75/199 (37.69%), Postives = 110/199 (55.28%), Query Frame = 0
Query: 59 QDHPLQQPWQLYLHYPTVTQALESYGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDGSVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAMKEGLVEGGMEAGVVPDFVWKDH 257
Q HPLQ W ++ H V ++ +G ++ Q+L EF+TVE FW + ++PKPS V M GS R+K+ + ++++ +FKKG+KPEWE N GG W+ R +LD W + VL L+GET++ G I GARVVDK K YR ELW + + + +RLR L + + ++P F WK H
Sbjct: 8 QLHPLQNTWCIWEH--KVAKSSADWG-DSMQSLAEFATVEDFWKVYNNVPKPSQV---MFDGSM-----RKKVGDRVIDSYSIFKKGIKPEWEAPENSHGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTAARLLERLRAC----LADRNLHEKLMPSFDWKAH 191
BLAST of EWM25557.1 vs. NCBI_GenBank
Match: gi|1173950557|gb|OQR98512.1| (hypothetical protein ACHHYP_08439 [Achlya hypogyna]) HSP 1 Score: 134.806 bits (338), Expect = 4.926e-35 Identity = 70/197 (35.53%), Postives = 112/197 (56.85%), Query Frame = 0
Query: 61 HPLQQPWQLYLHYPTVTQALESYGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDGSVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAMKEGLVEGGMEAGVVPDFVWKDH 257
HPLQ W ++ + +YG ++ LC FS+VE FW Y+ ++PKPS V + + +++K +++++F +FK+G++PEWED+ N+ GG W+ LD +W VL +IGET++ + ITGARVV K K YR ELW +++ + DEIRK + M + +G + VV D +K+H
Sbjct: 6 HPLQSAWSIWELRESTKG---NYGDNLHR-LCTFSSVEEFWGYWNNIPKPSQVLNDGI--------AKKKFSDRSVQSFAVFKEGIRPEWEDSANMNGGEWQLSIRLQPGPLDELWDKVVLGMIGETIDPTNEITGARVVHKNKKDTHTYRFELWLRSRDRNLADEIRKNMVACMNQ---DGSSQKVVVSDCSYKEH 187
BLAST of EWM25557.1 vs. NCBI_GenBank
Match: gi|219115499|ref|XP_002178545.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410280|gb|EEC50210.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 134.42 bits (337), Expect = 9.751e-35 Identity = 82/209 (39.23%), Postives = 115/209 (55.02%), Query Frame = 0
Query: 60 DHPLQQPWQLYLHYPT-VTQALESYGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKL--DGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDG-----SVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAMKEGLVEGGMEAGVV--PDFVWKDHS 258
D+PLQ W L+ H + KE QALC F TVE FW YF H+PKPS VF + G R+K+ +GK +E + LFK+G++PEW D N+ GG + CR F+ LD W + V AL+GET+ED + G RVVDK + ++LELW +T++ + ++++ L + M E G A + P F WKDHS
Sbjct: 8 DNPLQNEWVLWEHKAAGAGNKNPNQWKENMQALCSFRTVEDFWQYFNHIPKPSQVFFD---GE-----CRKKVGPEGKTIEEYSLFKEGIEPEWGDPKNVIGGEFFCRAYFEADILDLYWQNLVFALVGETIEDALGGKQDCVNGVRVVDKSR-GYPMFKLELWVNTRDPILKEKMKDLLLDLMTE-----GQPASIKGRPKFEWKDHS 202
BLAST of EWM25557.1 vs. NCBI_GenBank
Match: gi|1210525930|dbj|GAX15313.1| (hypothetical protein FisN_8Hu390 [Fistulifera solaris]) HSP 1 Score: 130.568 bits (327), Expect = 1.235e-33 Identity = 72/173 (41.62%), Postives = 100/173 (57.80%), Query Frame = 0
Query: 91 LCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKL--DGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDGS---VITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAMKEGLVEGGMEAGVVPDFVWKDHS 258
LC TVE FW F H+PKPS+VF + G SR+K+ K +E + LFKKG++PEW D N+ GG W CR+ F+ LD W + +++IGET+E S + G RVVDK + + ++LELW T+ G D + KRL+E +K+G + P F WKDHS
Sbjct: 4 LCHIRTVEDFWRNFNHIPKPSEVFFD---GE-----SRKKVGPTAKTIEEYSLFKKGIEPEWGDPANIVGGEWFCRQSFEPELLDLYWMNLAMSVIGETMETDSPEDTVNGVRVVDKSRGQYPMFKLELWVRTRRPGDKDRLLKRLQEIIKDG---QHPRFKLQPKFEWKDHS 165
BLAST of EWM25557.1 vs. NCBI_GenBank
Match: gi|1072229376|gb|OEU14111.1| (translation initiation factor eIF4e [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 129.413 bits (324), Expect = 1.026e-32 Identity = 79/215 (36.74%), Postives = 113/215 (52.56%), Query Frame = 0
Query: 61 HPLQQPWQLYLHYPTVTQALESYGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDG---KNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDG--------------SVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAMKEGLVEGGMEAGVVPDFVWKDHS 258
HPLQ W ++ H KE + L E STVE FW YF H+PKPS+VF + RK+ G K +E + LFKKG++PEW D NL GG W CR+ +L LD W + V++ +GET++D S + GARVVDK + Y+LELW +T++ + + I+ +L E + +G + + P F W+DHS
Sbjct: 6 HPLQNEWVMWEHKANQGSKDPDKWKENMKQLYESSTVEDFWRYFQHVPKPSEVFFDG---------DCRKMVGPEAKTIEEYSLFKKGIEPEWGDPQNLTGGEWFCRQFLELEVLDLYWQNLVMSCVGETIDDDVAGDDDAEDGSSLLSYVNGARVVDKSR-HYPLYKLELWINTRDPVIKERIKNKLIEIITDG---QPVTKRLQPKFDWRDHS 207
BLAST of EWM25557.1 vs. NCBI_GenBank
Match: gi|813108507|ref|XP_012194421.1| (hypothetical protein SPRG_00815 [Saprolegnia parasitica CBS 223.65] >gi|641540991|gb|KDO34754.1| hypothetical protein SPRG_00815 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 128.257 bits (321), Expect = 2.359e-32 Identity = 74/201 (36.82%), Postives = 108/201 (53.73%), Query Frame = 0
Query: 74 PTVTQALES----------------YGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDGSVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAM-KEGLVEGGMEAGVVPDFVWKDH 257
PT T ALES YG E LC FSTVE FW Y+ ++PKPS V + V ++K +++++F +FK+G++PEWED+ N+ GG W+ LD +W VL +IGET++ + +TGARVV K K YR ELW +++ + DEIRK + M +EG+ + V+ D K+H
Sbjct: 5 PTETHALESAWSIWELRDSGSSKSNYG-ENLHRLCTFSTVEEFWGYWNNIPKPSQVLNDGV--------VKKKFTDRSVQSFAVFKEGIRPEWEDSANMSGGEWQLSIKLQAGPLDELWDKLVLGMIGETIDPTNEVTGARVVHKNKKDSHSYRFELWLRSRDRNLADEIRKNMVACMNQEGVYPSKV---VISDCSHKEH 193
BLAST of EWM25557.1 vs. NCBI_GenBank
Match: gi|669139308|ref|XP_008605222.1| (hypothetical protein SDRG_01475 [Saprolegnia diclina VS20] >gi|530743266|gb|EQC41508.1| hypothetical protein SDRG_01475 [Saprolegnia diclina VS20]) HSP 1 Score: 126.331 bits (316), Expect = 1.098e-31 Identity = 72/199 (36.18%), Postives = 108/199 (54.27%), Query Frame = 0
Query: 74 PTVTQALES--------------YGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDGSVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAM-KEGLVEGGMEAGVVPDFVWKDH 257
PT T ALES YG E LC FS VE FW Y+ ++PKPS V + V ++K +++++F +FK+G++PEWED+ N+ GG W+ LD +W VL +IGET++ + +TGARVV K K YR ELW +++ + DEIRK + + +EG+ + V+ D +K+H
Sbjct: 5 PTETHALESAWSIWELRESSKSNYG-ENLHRLCTFSNVEEFWGYWNNIPKPSQVLNDGV--------VKKKFTDRSVQSFAVFKEGIRPEWEDSANMSGGEWQLSIKLQAGPLDELWDKLVLGMIGETIDPTNEVTGARVVHKNKKDSHSYRFELWLRSRDRNLADEIRKNMVACLNQEGVNPTKV---VISDCSYKEH 191
BLAST of EWM25557.1 vs. NCBI_GenBank
Match: gi|813219732|ref|XP_012211243.1| (hypothetical protein SPRG_16575 [Saprolegnia parasitica CBS 223.65] >gi|641523085|gb|KDO18051.1| hypothetical protein SPRG_16575 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 125.946 bits (315), Expect = 1.329e-31 Identity = 72/199 (36.18%), Postives = 108/199 (54.27%), Query Frame = 0
Query: 74 PTVTQALES--------------YGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDGSVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAM-KEGLVEGGMEAGVVPDFVWKDH 257
PT T ALES YG E LC FS+VE FW Y+ ++PKPS V + V ++K +++++F +FK G++PEWED+ N+ GG W+ LD +W VL +IGET++ + +TGARVV K K YR ELW +++ + DEIRK + + +EG+ + V+ D +K+H
Sbjct: 5 PTETHALESAWSIWELRDSSKSNYG-ENLHRLCTFSSVEEFWGYWNNIPKPSQVLNDGV--------VKKKFTDRSVQSFAVFKDGIRPEWEDSANMSGGEWQLSIKLQAGPLDELWDKLVLGMIGETIDPTNEVTGARVVHKNKKDSHSYRFELWLRSRDRNLADEIRKNMVACLNQEGVNPTKV---VISDCSYKEH 191 The following BLAST results are available for this feature:
BLAST of EWM25557.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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