EWM25557.1, cds5116 (CDS) Nannochloropsis gaditana

Overview
NameEWM25557.1
Unique Namecds5116
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:194152..194583 +
Alignment locationCM002465.1:194758..195270 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25557.1
Producteukaryotic translation initiation factor 4e
Orig transcript idgnl|cribi|Naga_100799g1.1576.mrna
GeneEIF4E
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:194152..194583 +
CM002465.1supercontigCM002465.1:194758..195270 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003723RNA binding
GO:0003743translation initiation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: INTERPRO
TermDefinition
IPR001040TIF_eIF_4E
IPR023398TIF_eIF4e-like_dom
Homology
BLAST of EWM25557.1 vs. NCBI_GenBank
Match: gi|585107331|gb|EWM25557.1| (eukaryotic translation initiation factor 4e [Nannochloropsis gaditana])

HSP 1 Score: 646.736 bits (1667), Expect = 0.000e+0
Identity = 314/314 (100.00%), Postives = 314/314 (100.00%), Query Frame = 0
Query:    1 MRQFFILEPLSDHHRLPGVVPDKVGSICDLAAAWTCTDDVMDNGTTSSSSSSISSTNGQDHPLQQPWQLYLHYPTVTQALESYGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDGSVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAMKEGLVEGGMEAGVVPDFVWKDHSESVVTASEGYSGSTTSLSVSTGREGGGGGGVGGGEGRGASGLSSAMRDKVFGKVKA 314
            MRQFFILEPLSDHHRLPGVVPDKVGSICDLAAAWTCTDDVMDNGTTSSSSSSISSTNGQDHPLQQPWQLYLHYPTVTQALESYGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDGSVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAMKEGLVEGGMEAGVVPDFVWKDHSESVVTASEGYSGSTTSLSVSTGREGGGGGGVGGGEGRGASGLSSAMRDKVFGKVKA
Sbjct:    1 MRQFFILEPLSDHHRLPGVVPDKVGSICDLAAAWTCTDDVMDNGTTSSSSSSISSTNGQDHPLQQPWQLYLHYPTVTQALESYGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDGSVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAMKEGLVEGGMEAGVVPDFVWKDHSESVVTASEGYSGSTTSLSVSTGREGGGGGGVGGGEGRGASGLSSAMRDKVFGKVKA 314          
BLAST of EWM25557.1 vs. NCBI_GenBank
Match: gi|551548317|ref|XP_005761801.1| (hypothetical protein EMIHUDRAFT_414699 [Emiliania huxleyi CCMP1516] >gi|485610679|gb|EOD09372.1| hypothetical protein EMIHUDRAFT_414699 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 137.117 bits (344), Expect = 6.502e-36
Identity = 71/179 (39.66%), Postives = 102/179 (56.98%), Query Frame = 0
Query:   61 HPLQQPWQLYLHY-PTVTQALESYGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDGSVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAMKEG 238
            H L+  W ++ H  P   ++ E    +    LCE +TVE FW  + ++PKPS++F +          +R+K   + +EAF +FKK +KPEWED  N  G  W CRR F +P LD  W   VL +IGETL+ G  I GARVVDK    R  YRLELW    +  ++ E+  +++EA+ +G
Sbjct:    8 HFLESEWVIWEHRAPDKNKSYE----DNMAKLCEVATVEDFWRAWNNIPKPSEIFYD--------GRTRKKFASRTVEAFSVFKKNIKPEWEDPANRSGAEWYCRRAFTMPQLDEFWLHIVLGMIGETLDAGDEICGARVVDKSVNGRTMYRLELWFRKNDDALSKELLAKMQEALGKG 174          
BLAST of EWM25557.1 vs. NCBI_GenBank
Match: gi|299117477|emb|CBN73980.1| (eukaryotic translation initiation factor 4E-like 1 [Ectocarpus siliculosus])

HSP 1 Score: 135.576 bits (340), Expect = 3.515e-35
Identity = 75/199 (37.69%), Postives = 110/199 (55.28%), Query Frame = 0
Query:   59 QDHPLQQPWQLYLHYPTVTQALESYGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDGSVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAMKEGLVEGGMEAGVVPDFVWKDH 257
            Q HPLQ  W ++ H   V ++   +G ++ Q+L EF+TVE FW  + ++PKPS V   M  GS      R+K+  + ++++ +FKKG+KPEWE   N  GG W+ R      +LD  W + VL L+GET++ G  I GARVVDK K     YR ELW  + +      + +RLR      L +  +   ++P F WK H
Sbjct:    8 QLHPLQNTWCIWEH--KVAKSSADWG-DSMQSLAEFATVEDFWKVYNNVPKPSQV---MFDGSM-----RKKVGDRVIDSYSIFKKGIKPEWEAPENSHGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTAARLLERLRAC----LADRNLHEKLMPSFDWKAH 191          
BLAST of EWM25557.1 vs. NCBI_GenBank
Match: gi|1173950557|gb|OQR98512.1| (hypothetical protein ACHHYP_08439 [Achlya hypogyna])

HSP 1 Score: 134.806 bits (338), Expect = 4.926e-35
Identity = 70/197 (35.53%), Postives = 112/197 (56.85%), Query Frame = 0
Query:   61 HPLQQPWQLYLHYPTVTQALESYGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDGSVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAMKEGLVEGGMEAGVVPDFVWKDH 257
            HPLQ  W ++    +      +YG   ++ LC FS+VE FW Y+ ++PKPS V  + +        +++K   +++++F +FK+G++PEWED+ N+ GG W+         LD +W   VL +IGET++  + ITGARVV K K     YR ELW  +++  + DEIRK +   M +   +G  +  VV D  +K+H
Sbjct:    6 HPLQSAWSIWELRESTKG---NYGDNLHR-LCTFSSVEEFWGYWNNIPKPSQVLNDGI--------AKKKFSDRSVQSFAVFKEGIRPEWEDSANMNGGEWQLSIRLQPGPLDELWDKVVLGMIGETIDPTNEITGARVVHKNKKDTHTYRFELWLRSRDRNLADEIRKNMVACMNQ---DGSSQKVVVSDCSYKEH 187          
BLAST of EWM25557.1 vs. NCBI_GenBank
Match: gi|219115499|ref|XP_002178545.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410280|gb|EEC50210.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 134.42 bits (337), Expect = 9.751e-35
Identity = 82/209 (39.23%), Postives = 115/209 (55.02%), Query Frame = 0
Query:   60 DHPLQQPWQLYLHYPT-VTQALESYGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKL--DGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDG-----SVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAMKEGLVEGGMEAGVV--PDFVWKDHS 258
            D+PLQ  W L+ H          +  KE  QALC F TVE FW YF H+PKPS VF +   G       R+K+  +GK +E + LFK+G++PEW D  N+ GG + CR  F+   LD  W + V AL+GET+ED        + G RVVDK +     ++LELW +T++  + ++++  L + M E     G  A +   P F WKDHS
Sbjct:    8 DNPLQNEWVLWEHKAAGAGNKNPNQWKENMQALCSFRTVEDFWQYFNHIPKPSQVFFD---GE-----CRKKVGPEGKTIEEYSLFKEGIEPEWGDPKNVIGGEFFCRAYFEADILDLYWQNLVFALVGETIEDALGGKQDCVNGVRVVDKSR-GYPMFKLELWVNTRDPILKEKMKDLLLDLMTE-----GQPASIKGRPKFEWKDHS 202          
BLAST of EWM25557.1 vs. NCBI_GenBank
Match: gi|1210525930|dbj|GAX15313.1| (hypothetical protein FisN_8Hu390 [Fistulifera solaris])

HSP 1 Score: 130.568 bits (327), Expect = 1.235e-33
Identity = 72/173 (41.62%), Postives = 100/173 (57.80%), Query Frame = 0
Query:   91 LCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKL--DGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDGS---VITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAMKEGLVEGGMEAGVVPDFVWKDHS 258
            LC   TVE FW  F H+PKPS+VF +   G      SR+K+    K +E + LFKKG++PEW D  N+ GG W CR+ F+   LD  W +  +++IGET+E  S    + G RVVDK + +   ++LELW  T+  G  D + KRL+E +K+G         + P F WKDHS
Sbjct:    4 LCHIRTVEDFWRNFNHIPKPSEVFFD---GE-----SRKKVGPTAKTIEEYSLFKKGIEPEWGDPANIVGGEWFCRQSFEPELLDLYWMNLAMSVIGETMETDSPEDTVNGVRVVDKSRGQYPMFKLELWVRTRRPGDKDRLLKRLQEIIKDG---QHPRFKLQPKFEWKDHS 165          
BLAST of EWM25557.1 vs. NCBI_GenBank
Match: gi|1072229376|gb|OEU14111.1| (translation initiation factor eIF4e [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 129.413 bits (324), Expect = 1.026e-32
Identity = 79/215 (36.74%), Postives = 113/215 (52.56%), Query Frame = 0
Query:   61 HPLQQPWQLYLHYPTVTQALESYGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDG---KNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDG--------------SVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAMKEGLVEGGMEAGVVPDFVWKDHS 258
            HPLQ  W ++ H            KE  + L E STVE FW YF H+PKPS+VF +            RK+ G   K +E + LFKKG++PEW D  NL GG W CR+  +L  LD  W + V++ +GET++D               S + GARVVDK +     Y+LELW +T++  + + I+ +L E + +G     +   + P F W+DHS
Sbjct:    6 HPLQNEWVMWEHKANQGSKDPDKWKENMKQLYESSTVEDFWRYFQHVPKPSEVFFDG---------DCRKMVGPEAKTIEEYSLFKKGIEPEWGDPQNLTGGEWFCRQFLELEVLDLYWQNLVMSCVGETIDDDVAGDDDAEDGSSLLSYVNGARVVDKSR-HYPLYKLELWINTRDPVIKERIKNKLIEIITDG---QPVTKRLQPKFDWRDHS 207          
BLAST of EWM25557.1 vs. NCBI_GenBank
Match: gi|813108507|ref|XP_012194421.1| (hypothetical protein SPRG_00815 [Saprolegnia parasitica CBS 223.65] >gi|641540991|gb|KDO34754.1| hypothetical protein SPRG_00815 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 128.257 bits (321), Expect = 2.359e-32
Identity = 74/201 (36.82%), Postives = 108/201 (53.73%), Query Frame = 0
Query:   74 PTVTQALES----------------YGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDGSVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAM-KEGLVEGGMEAGVVPDFVWKDH 257
            PT T ALES                YG E    LC FSTVE FW Y+ ++PKPS V  + V         ++K   +++++F +FK+G++PEWED+ N+ GG W+         LD +W   VL +IGET++  + +TGARVV K K     YR ELW  +++  + DEIRK +   M +EG+    +   V+ D   K+H
Sbjct:    5 PTETHALESAWSIWELRDSGSSKSNYG-ENLHRLCTFSTVEEFWGYWNNIPKPSQVLNDGV--------VKKKFTDRSVQSFAVFKEGIRPEWEDSANMSGGEWQLSIKLQAGPLDELWDKLVLGMIGETIDPTNEVTGARVVHKNKKDSHSYRFELWLRSRDRNLADEIRKNMVACMNQEGVYPSKV---VISDCSHKEH 193          
BLAST of EWM25557.1 vs. NCBI_GenBank
Match: gi|669139308|ref|XP_008605222.1| (hypothetical protein SDRG_01475 [Saprolegnia diclina VS20] >gi|530743266|gb|EQC41508.1| hypothetical protein SDRG_01475 [Saprolegnia diclina VS20])

HSP 1 Score: 126.331 bits (316), Expect = 1.098e-31
Identity = 72/199 (36.18%), Postives = 108/199 (54.27%), Query Frame = 0
Query:   74 PTVTQALES--------------YGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDGSVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAM-KEGLVEGGMEAGVVPDFVWKDH 257
            PT T ALES              YG E    LC FS VE FW Y+ ++PKPS V  + V         ++K   +++++F +FK+G++PEWED+ N+ GG W+         LD +W   VL +IGET++  + +TGARVV K K     YR ELW  +++  + DEIRK +   + +EG+    +   V+ D  +K+H
Sbjct:    5 PTETHALESAWSIWELRESSKSNYG-ENLHRLCTFSNVEEFWGYWNNIPKPSQVLNDGV--------VKKKFTDRSVQSFAVFKEGIRPEWEDSANMSGGEWQLSIKLQAGPLDELWDKLVLGMIGETIDPTNEVTGARVVHKNKKDSHSYRFELWLRSRDRNLADEIRKNMVACLNQEGVNPTKV---VISDCSYKEH 191          
BLAST of EWM25557.1 vs. NCBI_GenBank
Match: gi|813219732|ref|XP_012211243.1| (hypothetical protein SPRG_16575 [Saprolegnia parasitica CBS 223.65] >gi|641523085|gb|KDO18051.1| hypothetical protein SPRG_16575 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 125.946 bits (315), Expect = 1.329e-31
Identity = 72/199 (36.18%), Postives = 108/199 (54.27%), Query Frame = 0
Query:   74 PTVTQALES--------------YGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRDFDLPSLDRMWTSTVLALIGETLEDGSVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAM-KEGLVEGGMEAGVVPDFVWKDH 257
            PT T ALES              YG E    LC FS+VE FW Y+ ++PKPS V  + V         ++K   +++++F +FK G++PEWED+ N+ GG W+         LD +W   VL +IGET++  + +TGARVV K K     YR ELW  +++  + DEIRK +   + +EG+    +   V+ D  +K+H
Sbjct:    5 PTETHALESAWSIWELRDSSKSNYG-ENLHRLCTFSSVEEFWGYWNNIPKPSQVLNDGV--------VKKKFTDRSVQSFAVFKDGIRPEWEDSANMSGGEWQLSIKLQAGPLDELWDKLVLGMIGETIDPTNEVTGARVVHKNKKDSHSYRFELWLRSRDRNLADEIRKNMVACLNQEGVNPTKV---VISDCSYKEH 191          
The following BLAST results are available for this feature:
BLAST of EWM25557.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107331|gb|EWM25557.1|0.000e+0100.00eukaryotic translation initiation factor 4e [Nanno... [more]
gi|551548317|ref|XP_005761801.1|6.502e-3639.66hypothetical protein EMIHUDRAFT_414699 [Emiliania ... [more]
gi|299117477|emb|CBN73980.1|3.515e-3537.69eukaryotic translation initiation factor 4E-like 1... [more]
gi|1173950557|gb|OQR98512.1|4.926e-3535.53hypothetical protein ACHHYP_08439 [Achlya hypogyna... [more]
gi|219115499|ref|XP_002178545.1|9.751e-3539.23predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210525930|dbj|GAX15313.1|1.235e-3341.62hypothetical protein FisN_8Hu390 [Fistulifera sola... [more]
gi|1072229376|gb|OEU14111.1|1.026e-3236.74translation initiation factor eIF4e [Fragilariopsi... [more]
gi|813108507|ref|XP_012194421.1|2.359e-3236.82hypothetical protein SPRG_00815 [Saprolegnia paras... [more]
gi|669139308|ref|XP_008605222.1|1.098e-3136.18hypothetical protein SDRG_01475 [Saprolegnia dicli... [more]
gi|813219732|ref|XP_012211243.1|1.329e-3136.18hypothetical protein SPRG_16575 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5128rna5128Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications