rna5122, rna5122 (mRNA) Nannochloropsis gaditana

Overview
Namerna5122
Unique Namerna5122
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1130
Alignment locationCM002465.1:176961..178700 -

Link to JBrowse

Properties
Property NameValue
ProductGuanylyl cyclase
Orig transcript idgnl|cribi|Naga_100359g2.214.mrna
Orig protein idgnl|cribi|Naga_100359g2.214
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:176961..178700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100359g2gene4944Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25562.1cds5110Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5122rna5122-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5122 ID=rna5122|Name=rna5122|organism=Nannochloropsis gaditana|type=mRNA|length=1130bp
ATGGAGGAAGACAAAGCGGGCGTGGTGCCCCTTGACCGGGTGGTGTTGCC
CATGCCGGGCGTGAACGTCGTCTACCCCGGCAACGAGGTGGGCGAGCACT
ACGTGCGCTTGTGTCAGGCGCGGGGGGTCCGCCTCGAGGATTTCAAAAAT
AAGGCCCAGTCCGAGTACACCCTGGGGGGGGACTACCGGAAAATCATGGA
AAAGGCGGGGGACTTCCGATGGAAGCTGGCTCGCTACCACCAGGCGTCCG
AGCGGTTGGCCGAGAGTGACGTGGACGTGCTGGTCCGCAGAGAGGCGGAA
GAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCTTACCCATATA
TTGGCATAGGTTTGCGGGCGAGCTGCGGCGGGGGCCAGAAGGAGAGGGAG
GAGAAGAGGAGGAGACCAGGGGAGGGGAGGAAGGAGGGAAGGAAGAAGGG
AGGGAGGGAGAAACAGAGAAGGAGAAGGTGGGTTCGAGGGCGCTTATACT
GTCGTTCACCCTGCCACCTTCAACATATGCGACCATGCTCCTGAGGGAAC
TGATGAAAGTCTCCACGACTGCGCACGAAATGAAGAAGTTGAACGAGCCG
GTGCCTAGCCCGACCTCCCGCCCGCCCTCCGTCCCCTCCTCGGGCCACAC
CCCGGAGAAAGTTCCAGAAGTGTCCGAGCCGGCTTTAAAAGGGAGGAAGG
GAGAAGGCGGGGAAGAAGGAGACGGGGAGGACGGGGATTGGGTCATGGTG
GGAGAGGGAGGGGAGGCCAAATCTGAGGGTTGATCCGGGATGTCACGGCG
GAGGGGGGGAGGATGGAGGAAGGATGTGAAGGTGTCGATGGATGAGCGGG
GAGGGTTTGTATTCCCGCCCAGAAGAAAGGGCTGTGGGCGATACACGAAC
GGCGCGAAGAGAAGCTAGCGAATTCCCAGATACTGTGGAAGTCTGGGCGA
GACCCTTGCTAGCTTCTTCTCTGCTCCTTGGGTCCCTCCCTGCCCTCCTT
CTCGCCCTCCCTCCTGTCCCTCCGAAGCGTGTCCCCAGCCTTCGAGAGCT
GCAGGTGGCTGGCCGACAGAGGGGAGCTAATGCATGGGATGGCGGAGATG
GATCCGTGAAGGAAATGGAAAGAAAAAAAA
back to top

protein sequence of rna5122

>rna5122-protein ID=rna5122-protein|Name=rna5122|organism=Nannochloropsis gaditana|type=polypeptide|length=435bp
MGSNVSRSTSTTDSTTASTGFTSSSSPSNNVVDLYGGTKELKDDLSTIIV
RLRGVSDEEDRAIPTRNGGDRRTVREEVHSTANARVGHIERGGTHLCLQH
IPQQATWDCGIACLQMILTHVAASAPFSSLSIPPSRDALLARVGTRSIWT
IDLLYLLKPYLTGSQRAVFLVTASPGVCVRHATLSYYTKSGQFGVDRQRV
LRLFRAAPGNGLRVYEGSLSWEDLRDLVCTGRVLLVLLVDQRLLPSSSSL
PSAPPSLPSSPPPGASSVTPKPLTTEASSSSSIPIFSSDERQPQHEQGPH
SETGASSSSMGSPSCHALNADPPSSSLPSLPLALPPPSSSSTAYCGHYIL
ITGYRPASPPPCLPSSPPSSPSTTSGAGFFLYKDPAKAPLSPGEQEGKRG
TREQEWCKDRLIEVSVLERARRAEGTDEDILVVEV
back to top

mRNA from alignment at CM002465.1:176961..178700-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5122 ID=rna5122|Name=rna5122|organism=Nannochloropsis gaditana|type=mRNA|length=1740bp|location=Sequence derived from alignment at CM002465.1:176961..178700- (Nannochloropsis gaditana)
TGATGTCCCGCAGGATTTACATGATATCGTTTTGTTCGGATAGTTGTGTA
AAACTAGCTACAAAGAACGTCAAGTCAGACCCGTCGGCGTCGGCGAGCGT
CGGAACATCACATGGCAATGCTCACTTCTTTTCATTTCGATATCGATTCG
TCGCATCATTCTCTTTCTAAGGTGCTCAGTCAATTGGGTGAATGGGCAGC
AATGTATCTCGCAGCACAAGTACGACAGACTCCACCACTGCTTCCACCGG
TTTCACGTCGTCTTCTTCGCCATCAAACAACGTGGTAGACCTGTATGGTG
GAACAAAGGAGCTGAAAGACGACCTTTCTACAATTATTGTGCGCCTGAGA
GGGGTATCGGATGAGGAAGACAGGGCCATACCGACTAGAAATGGAGGCGA
TCGTCGAACCGTACGTGAGGAAGTCCACAGCACTGCCAATGCGAGGGTTG
GGCATATTGAAAGAGGAGGAACCCACCTTTGCCTCCAACACATTCCCCAA
CAAGCAACCTGGGACTGTGGCATCGCTTGTTTGCAGATGATATTGACCCA
TGTCGCGGCCTCTGCCCCTTTCTCCTCCCTCTCGATCCCTCCTTCCCGGG
ATGCCCTGCTCGCCCGCGTTGGGACCCGGTCGATCTGGACCATCGACTTG
CTCTACCTGCTCAAGCCGTACCTGACAGGGAGTCAGCGCGCAGTCTTCCT
TGTCACCGCGTCCCCCGGCGTCTGCGTCCGGCATGCGACGCTGTCTTACT
ACACCAAGTCGGGGCAATTCGGGGTGGACAGGCAGCGAGTCCTCCGCCTT
TTTCGAGCCGCCCCTGGGAATGGACTCAGGGTCTACGAAGGGAGCCTATC
CTGGGAAGACTTGAGGGATCTGGTGTGCACAGGACGGGTTTTGCTCGTCC
TGCTCGTCGACCAACGGCTGCTCCCTTCCTCCTCCTCCCTACCCTCTGCC
CCTCCCTCCCTCCCTTCCTCTCCTCCTCCCGGCGCCTCCTCCGTGACGCC
CAAACCACTGACAACGGAAGCGTCCTCCTCCTCCTCGATTCCCATCTTTT
CTTCCGACGAGCGACAGCCTCAGCATGAGCAGGGGCCGCACTCAGAGACA
GGCGCCTCGTCCTCCTCAATGGGCTCTCCATCCTGCCACGCCCTGAATGC
CGACCCTCCTTCCTCCTCCCTTCCTTCCCTGCCCCTGGCATTGCCCCCTC
CCTCTTCCTCCTCCACAGCCTACTGCGGCCACTACATCCTTATCACCGGC
TACCGCCCAGCATCCCCCCCTCCCTGCCTCCCTTCCTCCCCCCCTTCCTC
CCCATCCACCACCTCCGGCGCTGGCTTTTTCCTCTACAAGGACCCGGCCA
AGGCCCCCCTATCACCAGGGGAGCAGGAAGGGAAACGGGGAACGAGGGAG
CAAGAGTGGTGCAAGGATCGTCTGATTGAGGTATCGGTACTGGAGAGAGC
GAGGCGGGCTGAGGGCACGGACGAAGACATTCTAGTGGTGGAAGTGTAGA
TACAAGCTCAAGATAAGGCCTTTCGTAGCTGTACATGGGGGAATACTTTC
GACAGAGGGGAAGGGATAGGAAGGGGATTGCACACAGCCGGCATGTACAG
CGCAAGGCAGGCACAGTAAGGAATCGACAGAGAAAAAATTGGTATCGCCC
TTCGCAAGCAGGGCGTTAAGCCTCTTTTTTTTTCTTTCCATTTCCTTCAC
GGATCCATCTCCGCCATCCCATGCATTAGCTCCCCTCTGT
back to top

Coding sequence (CDS) from alignment at CM002465.1:176961..178700-

>rna5122 ID=rna5122|Name=rna5122|organism=Nannochloropsis gaditana|type=CDS|length=1308bp|location=Sequence derived from alignment at CM002465.1:176961..178700- (Nannochloropsis gaditana)
ATGGGCAGCAATGTATCTCGCAGCACAAGTACGACAGACTCCACCACTGC
TTCCACCGGTTTCACGTCGTCTTCTTCGCCATCAAACAACGTGGTAGACC
TGTATGGTGGAACAAAGGAGCTGAAAGACGACCTTTCTACAATTATTGTG
CGCCTGAGAGGGGTATCGGATGAGGAAGACAGGGCCATACCGACTAGAAA
TGGAGGCGATCGTCGAACCGTACGTGAGGAAGTCCACAGCACTGCCAATG
CGAGGGTTGGGCATATTGAAAGAGGAGGAACCCACCTTTGCCTCCAACAC
ATTCCCCAACAAGCAACCTGGGACTGTGGCATCGCTTGTTTGCAGATGAT
ATTGACCCATGTCGCGGCCTCTGCCCCTTTCTCCTCCCTCTCGATCCCTC
CTTCCCGGGATGCCCTGCTCGCCCGCGTTGGGACCCGGTCGATCTGGACC
ATCGACTTGCTCTACCTGCTCAAGCCGTACCTGACAGGGAGTCAGCGCGC
AGTCTTCCTTGTCACCGCGTCCCCCGGCGTCTGCGTCCGGCATGCGACGC
TGTCTTACTACACCAAGTCGGGGCAATTCGGGGTGGACAGGCAGCGAGTC
CTCCGCCTTTTTCGAGCCGCCCCTGGGAATGGACTCAGGGTCTACGAAGG
GAGCCTATCCTGGGAAGACTTGAGGGATCTGGTGTGCACAGGACGGGTTT
TGCTCGTCCTGCTCGTCGACCAACGGCTGCTCCCTTCCTCCTCCTCCCTA
CCCTCTGCCCCTCCCTCCCTCCCTTCCTCTCCTCCTCCCGGCGCCTCCTC
CGTGACGCCCAAACCACTGACAACGGAAGCGTCCTCCTCCTCCTCGATTC
CCATCTTTTCTTCCGACGAGCGACAGCCTCAGCATGAGCAGGGGCCGCAC
TCAGAGACAGGCGCCTCGTCCTCCTCAATGGGCTCTCCATCCTGCCACGC
CCTGAATGCCGACCCTCCTTCCTCCTCCCTTCCTTCCCTGCCCCTGGCAT
TGCCCCCTCCCTCTTCCTCCTCCACAGCCTACTGCGGCCACTACATCCTT
ATCACCGGCTACCGCCCAGCATCCCCCCCTCCCTGCCTCCCTTCCTCCCC
CCCTTCCTCCCCATCCACCACCTCCGGCGCTGGCTTTTTCCTCTACAAGG
ACCCGGCCAAGGCCCCCCTATCACCAGGGGAGCAGGAAGGGAAACGGGGA
ACGAGGGAGCAAGAGTGGTGCAAGGATCGTCTGATTGAGGTATCGGTACT
GGAGAGAGCGAGGCGGGCTGAGGGCACGGACGAAGACATTCTAGTGGTGG
AAGTGTAG
back to top
Synonyms
Publications