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Properties
| Property Name | Value |
|---|
| Product | trna pseudouridine synthase d |
| Orig transcript id | gnl|cribi|Naga_100359g1.211.mrna |
| Orig protein id | gnl|cribi|Naga_100359g1.211 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:175896..177025 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5121 ID=rna5121|Name=rna5121|organism=Nannochloropsis gaditana|type=mRNA|length=2177bp
CCTTGGGGATTAAATTACCGGTATCTGAAAATTGGTCTTGTCATGAATGC
ATCCGATGAAGCTTGCCAATTTGCTCACTTTTCCCAGGCAGACCATCAGT
GATCCAATGCTTTCCCTGTTACGGACCACAAGATTGACTCCTCGAACAGT
GTTCAGCATCACACGTGGAAGTCGGGTCTATCATCGGAGGGGAATTACAA
GAGCAAAGTCTTGTCTTTCACCGAAGTGCATGCATATTCCGTCGACATCG
TCCTATTCTTCTCCTCGTGATGGATTTGGAGCCCTTGTTATCCTCCTTGT
TGTTGCCATTTCCCTTCCTTCTGGCACCACAACCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCT
TCTTCTTCTTCCTCTTCTGCCTCCTCCTCCTCCTCTTCTTCTCCTACTCC
TCTACCCACAACCCGTCACCGACCATGCGTCAAGCATAAACAGCAGTACC
GGGCCTACGTATGGGGAGACGCCCGGTGGCTACAGCCGCCTTCCTCTACC
TTGAGTGCCTCCTTGACCACGACCCCTCTCTCTCTCCCTTTCCCTGACGT
ACGCAGCCTTGCCTTTGGGCCCTCTTTCGCAGCCATTCTCAGGCGTGACG
GGACGGTGCATTGGAAAAGCGCGCGAAGCCCGTCTTTTCTCCCGCTGGCG
ATGCCCGTGGGAGAGCACGCGGACCGCATTGTCTGCACCAGGGACACGAT
CTATGCCCTCACCACCAACGGCCGTGTCTTCTTCTGGTCAATGCCTGGTC
TGTTGCGCTCTCTCCGGACAGCTTCCACCGCCTCCTCCCCTCCTTCCTCG
TCGACCCCTGGATTGCCTCTGGAATTTGCGTCGCTCGCCCCACGCCCTAC
GACCGACGCGCCCCCTTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTT
CCCCCCTGCCTTCCTTCTTGTCCTCCTCCCACGTGGTCATCACCGGGATC
GCAGCCGGGCATGATCACGTGCTGATGACGACCAGAGATGGGACTGTGCT
AGGTGTGGGCAGCAATGCTCAAGGGCAATTAGGATTCCCGGCGACTAATG
CCGCGTTCACAGAACCTCGCGAAATACCTTTCTTCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCGTCCCACACGGGTTGAAGCGGGCCACGCCCACTCCTT
CGTCGTCTGCGAGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAAGGAGAAA
AAGAATCGGTGATCTACGCCTTTGGATGCGATCGGTGGCTGCAGCTCGGC
TTGGGTAGGTGCCTTGAGAGCGATTCCCACCGAAACCCTCTTTCGCCCAA
GCTCTTTTCAGTCATCCTGCCTTGCAAGCTCGATTTCCCAATATCTGTGC
ATGGCCGCTGCACTCAATCTCAGTGTCTCAGCTCTCTGCCTTTCCCCCCG
CTACCTTCCTTCCCCTCTCTTCCGCCGTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCTCTTCCTCGTATTAGGCGAGGCGTGGGCCGCGAGAGGCGGCCC
CCTCTGCTTTCGTCCTCAGCCTCTACACATCTTGCCGCCATTACCGTCCT
CCCCCCCGTCCTCCCCCTTTACCCCGCCCTCGGGGGACAAGAAGCTGCTC
GGAGTAAGGGGGGGAGGGGATCACACGCTCTTCCTCCTCGAGCGACAGGG
GAAGGCAGGGAGGGAAGGAGGGAGGGAAGAGAAAAGGGACCATCAGCTAT
GGGCTGCGGGCCACGGTGCTTTTGCCTAGCTCTACGTGCATCTCACAAGT
TGCTGTCGGACGGGCTCACAGCTTGCTTTTGACAAGCGAGGACAGGGAGG
AAGGAGGAAGAGGGGGAGGGTGGGTGTATGGATGGGGGAAGAATCAAAAG
CGCCAGGCCAATTTCGCCTGTCCATGTGAAAAAACGAAGGGCGACATCTT
GCAACCTGTGATGGTGCCTTTGTTTGCGATGGAGGGCACGGGTGCAGGGA
TCGGGAGGGTGGAGGGGGTGTTCGCGGGCTATGACTCGAGCGGGGTCGTC
ATTCAATGCGATGATGATGCAAACGAGAATGGGACGGAAGGGCATTGAAG
GCAAGCTTTAAAGAAATCTTAGTAATGTGGCTATTTTTTTCGTGCCGTGA
ATAATTTGCTTGACTTCAAGGATGCAG back to topprotein sequence of rna5121 >rna5121-protein ID=rna5121-protein|Name=rna5121|organism=Nannochloropsis gaditana|type=polypeptide|length=260bp
MEEDKAGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKN
KAQSEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVRREAE
EREGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGKEEG
REGETEKEKVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNEP
VPSPTSRPPSVPSSGHTPEKVPEVSEPALKGRKGEGGEEGDGEDGDWVMV
GEGGEAKSEG back to topmRNA from alignment at CM002465.1:175896..177025+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5121 ID=rna5121|Name=rna5121|organism=Nannochloropsis gaditana|type=mRNA|length=1130bp|location=Sequence derived from alignment at CM002465.1:175896..177025+ (Nannochloropsis gaditana)
atggaggaagacaaagcgGGCGTGGTGCCCCTTGACCGGGTGGTGTTGCC
CATGCCGGGCGTGAACGTCGTCTACCCCGGCAACGAGGTGGGCGAGCACT
ACGTGCGCTTGTGTCAGGCGCGGGGGGTCCGCCTCGAGGATTTCAAAAAT
AAGGCCCAGTCCGAGTACACCCTGGGGGGGGACTACCGGAAAATCATGGA
AAAGGCGGGGGACTTCCGATGGAAGCTGGCTCGCTACCACCAGGCGTCCG
AGCGGTTGGCCGAGAGTGACGTGGACGTGCTGGTCCGcagagaggcggaa
gagagggagggagggagggagggagggagggagggaggcttaCCCATATA
TTGGCATAGGTTTGCGGGCGAGCTGCGGCGGGggccagaaggagagggag
gagaagaggaggagaccaggggaggggaggaaggagggaaggaagaaggg
agggagggagaaacagagaaggagaaggtgggttCGAGGGCGCTTATACT
GTCGTTCACCCTGCCACCTTCAACATATGCGACCATGCTCCTGAGGGAAC
TGATGAAAGTCTCCACGACTGCGCACGAAATGAAGAAGTTGAACGAGCCG
GTGCCTAGCCcgacctcccgcccgccctccgtcccctcctcgggcCACAC
CCCGGAGAAAGTTCCAGAAGTGTCCGAGCCGGCTttaaaagggaggaagg
gagaaggcggggaagaaggagacggggaggacggggattGGGTcatggtg
ggagagggaggggaggccaaATCTGAGGGTTGATCCGGGATGTcacggcg
gagggggggaggatggaggaaggatgtGAAGGTGTCGATGGATGAGCGGG
GAGGGTTTGTATTCCCGCCCAGAAGAAAGGGCTGTGGGCGATACACGAAC
GGCGCGAAGAGAAGCTAGCGAATTCCCAGATACTGTGGAAGTCTGGGCGA
GACCCTTGCTAGCTTCTTCTCTGCTCCTTgggtccctccctgccctcctt
ctcgccctccctcctgtccctccgaAGCGTGTCCCCAGCCTTCGAGAGCT
GCAGGTGGCTGGCCGACAGAGGGGAGCTAATGCATGGGATGGCGGAGATG
GATccgtgaaggaaatggaaagaaaaaaaa back to topCoding sequence (CDS) from alignment at CM002465.1:175896..177025+ >rna5121 ID=rna5121|Name=rna5121|organism=Nannochloropsis gaditana|type=CDS|length=783bp|location=Sequence derived from alignment at CM002465.1:175896..177025+ (Nannochloropsis gaditana)
atggaggaagacaaagcgGGCGTGGTGCCCCTTGACCGGGTGGTGTTGCC
CATGCCGGGCGTGAACGTCGTCTACCCCGGCAACGAGGTGGGCGAGCACT
ACGTGCGCTTGTGTCAGGCGCGGGGGGTCCGCCTCGAGGATTTCAAAAAT
AAGGCCCAGTCCGAGTACACCCTGGGGGGGGACTACCGGAAAATCATGGA
AAAGGCGGGGGACTTCCGATGGAAGCTGGCTCGCTACCACCAGGCGTCCG
AGCGGTTGGCCGAGAGTGACGTGGACGTGCTGGTCCGcagagaggcggaa
gagagggagggagggagggagggagggagggagggaggcttaCCCATATA
TTGGCATAGGTTTGCGGGCGAGCTGCGGCGGGggccagaaggagagggag
gagaagaggaggagaccaggggaggggaggaaggagggaaggaagaaggg
agggagggagaaacagagaaggagaaggtgggttCGAGGGCGCTTATACT
GTCGTTCACCCTGCCACCTTCAACATATGCGACCATGCTCCTGAGGGAAC
TGATGAAAGTCTCCACGACTGCGCACGAAATGAAGAAGTTGAACGAGCCG
GTGCCTAGCCcgacctcccgcccgccctccgtcccctcctcgggcCACAC
CCCGGAGAAAGTTCCAGAAGTGTCCGAGCCGGCTttaaaagggaggaagg
gagaaggcggggaagaaggagacggggaggacggggattGGGTcatggtg
ggagagggaggggaggccaaATCTGAGGGTTGA back to top
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