EWM25559.1, cds5109 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25559.1 vs. NCBI_GenBank
Match: gi|585107334|gb|EWM25559.1| (trna pseudouridine synthase d [Nannochloropsis gaditana]) HSP 1 Score: 511.146 bits (1315), Expect = 0.000e+0 Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
Query: 1 MEEDKAGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKNKAQSEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVRREAEEREGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGKEEGREGETEKEKVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNEPVPSPTSRPPSVPSSGHTPEKVPEVSEPALKGRKGEGGEEGDGEDGDWVMVGEGGEAKSEG 260
MEEDKAGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKNKAQSEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVRREAEEREGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGKEEGREGETEKEKVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNEPVPSPTSRPPSVPSSGHTPEKVPEVSEPALKGRKGEGGEEGDGEDGDWVMVGEGGEAKSEG
Sbjct: 1 MEEDKAGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKNKAQSEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVRREAEEREGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGKEEGREGETEKEKVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNEPVPSPTSRPPSVPSSGHTPEKVPEVSEPALKGRKGEGGEEGDGEDGDWVMVGEGGEAKSEG 260
BLAST of EWM25559.1 vs. NCBI_GenBank
Match: gi|1083913522|ref|XP_018622549.1| (PREDICTED: multisubstrate pseudouridine synthase 7 isoform X2 [Nicotiana tomentosiformis]) HSP 1 Score: 111.309 bits (277), Expect = 4.541e-24 Identity = 75/204 (36.76%), Postives = 108/204 (52.94%), Query Frame = 0
Query: 2 EEDK-AGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKNKAQ--SEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVR--REAEEREGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGK-EEGREGETEKEKVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNE 199
EED +G ++ V+LP+PG V+YP N++GE Y L Q G+ L + +K + S + G YR++ +K DF W+L Y + LAE+D DV+ + ++++ RE G E LP + + G G EE E + EE + G +E AL LSFTLP S YATM +REL+K ST+ K LNE
Sbjct: 535 EEDLISGTYTIEDVLLPLPGSRVIYPSNDIGEVYCDLAQKDGISLTETAHKIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAETDFDVIAKSVKKSKAREDNSANGSEE-LPADYGTSSATFEGGDMLPGKSREEKINSEARMQSEESQSGGNAQE--SQMALKLSFTLPASCYATMAVRELLKTSTSVAFHKSLNE 735
BLAST of EWM25559.1 vs. NCBI_GenBank
Match: gi|697157552|ref|XP_009587531.1| (PREDICTED: multisubstrate pseudouridine synthase 7 isoform X1 [Nicotiana tomentosiformis] >gi|1025134878|ref|XP_016465389.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Nicotiana tabacum]) HSP 1 Score: 111.309 bits (277), Expect = 4.721e-24 Identity = 75/204 (36.76%), Postives = 108/204 (52.94%), Query Frame = 0
Query: 2 EEDK-AGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKNKAQ--SEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVR--REAEEREGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGK-EEGREGETEKEKVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNE 199
EED +G ++ V+LP+PG V+YP N++GE Y L Q G+ L + +K + S + G YR++ +K DF W+L Y + LAE+D DV+ + ++++ RE G E LP + + G G EE E + EE + G +E AL LSFTLP S YATM +REL+K ST+ K LNE
Sbjct: 536 EEDLISGTYTIEDVLLPLPGSRVIYPSNDIGEVYCDLAQKDGISLTETAHKIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAETDFDVIAKSVKKSKAREDNSANGSEE-LPADYGTSSATFEGGDMLPGKSREEKINSEARMQSEESQSGGNAQE--SQMALKLSFTLPASCYATMAVRELLKTSTSVAFHKSLNE 736
BLAST of EWM25559.1 vs. NCBI_GenBank
Match: gi|970004280|ref|XP_015062934.1| (PREDICTED: multisubstrate pseudouridine synthase 7 [Solanum pennellii]) HSP 1 Score: 107.071 bits (266), Expect = 1.239e-22 Identity = 74/204 (36.27%), Postives = 108/204 (52.94%), Query Frame = 0
Query: 2 EED-KAGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKNKAQ--SEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVL---VRREAEEREGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGKEEGREGETEKEKVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNE 199
EED K+G +D V+LP+PG V+YP N++GE Y L Q G+ L + +K + S + G YR++ +K DF W+L Y + LAE+D DV+ V+R+ E E G +E LP + + G + G+ E + E G + + + AL LSFTLP S YATM +REL+K ST+ K LN+
Sbjct: 530 EEDLKSGTYTIDDVLLPLPGSRVIYPSNDIGEVYRDLAQKDGISLTETAHKIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAETDFDVIAKSVKRKVIE-EDPANGSKE--LPAD----SSAISVGGDMLSGKVCEEKINNEAGMQSEKSQSGGNAEESQMALKLSFTLPASCYATMAVRELLKTSTSVAFHKSLND 726
BLAST of EWM25559.1 vs. NCBI_GenBank
Match: gi|565362070|ref|XP_006347775.1| (PREDICTED: multisubstrate pseudouridine synthase 7 isoform X1 [Solanum tuberosum]) HSP 1 Score: 105.916 bits (263), Expect = 3.069e-22 Identity = 71/207 (34.30%), Postives = 104/207 (50.24%), Query Frame = 0
Query: 2 EED-KAGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKNKAQ--SEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVR------REAEEREGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGKEEGREGETEKEKVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNE 199
EED K+G +D V+LP+PG V+YP N++GE Y L Q + L + +K + S + G YR++ +K DF W+L Y + LAE+D DV+ RE + G +E LP + + G + G+ E + E G + + + AL LSFTLP S YATM +REL+K ST+ K LN+
Sbjct: 489 EEDLKSGTYAIDDVLLPLPGSRVIYPSNDIGEVYCDLAQKDDISLTETAHKIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAETDFDVIANSVKSKVREEDPTNGSKE------LPAD----SSAISVGGDMLSGKVCEEKINNEAGMQSEKSQSGGNAEESQMALKLSFTLPASCYATMAVRELLKTSTSVAFHKSLND 685
BLAST of EWM25559.1 vs. NCBI_GenBank
Match: gi|1109274688|ref|XP_019161541.1| (PREDICTED: multisubstrate pseudouridine synthase 7 [Ipomoea nil]) HSP 1 Score: 105.145 bits (261), Expect = 5.357e-22 Identity = 73/217 (33.64%), Postives = 109/217 (50.23%), Query Frame = 0
Query: 2 EEDKAGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRL-EDFKNKAQSEYT-LGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVRRE--AEEREGGREGGREGGLPIYWHRFAGELRRGPEGEGGE-EEETRGGEEGGKEEGREGETEKEKV--------GSR------ALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNE 199
E+ ++G +D VVLP+PG V+YP N++ + Y L + GV+L E N + T + G YR++ +K DF W+L Y ++ LAE+D D++ + ++ R+ G ++ L I G E E E +E G E R E + + V GSR AL ++FTLP S YATM +REL+K ST+ K LNE
Sbjct: 532 EDIRSGTYTIDDVVLPLPGSRVIYPSNDIAKIYHDLAEKDGVKLTESMHNVKEFSITNMTGSYRRVFQKPKDFEWELIAYCDGTQSLAETDWDIISKSVTGSQVRDSGSAKDKDDELSI-----------GIRTESKNIEAENNNDQELGPEPERMDEVKIKTVSQPEESLDGSRAQENQMALKMTFTLPASCYATMAVRELLKTSTSVAFHKSLNE 737
BLAST of EWM25559.1 vs. NCBI_GenBank
Match: gi|1111029438|ref|XP_019265836.1| (PREDICTED: multisubstrate pseudouridine synthase 7 isoform X2 [Nicotiana attenuata]) HSP 1 Score: 104.76 bits (260), Expect = 6.410e-22 Identity = 72/207 (34.78%), Postives = 106/207 (51.21%), Query Frame = 0
Query: 2 EEDK-AGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKNKAQ--SEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVR--REAEEREGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGKEEGREGETEKE----KVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNE 199
EED +G ++ V+LP+PG V+YP N++GE Y L Q G+ L + +K + S + G YR++ +K DF W+L Y + LA++D D + + ++++ RE G E Y A EGG+ +G EE E + E + + AL LSFTLP S YATM +REL+K ST+ K LNE
Sbjct: 535 EEDLISGTYTIEDVLLPLPGSRVIYPSNDIGEVYCDLAQKDGISLTETAHKIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAQTDFDAIAKSVKKSKVREEKSTNGSEELAADYGTSSAI-------SEGGDMLPGKGREEKINSETMQSEKSQSGGNAQESQMALKLSFTLPASCYATMAVRELLKTSTSVAFHKSLNE 734
BLAST of EWM25559.1 vs. NCBI_GenBank
Match: gi|1111029436|ref|XP_019265835.1| (PREDICTED: multisubstrate pseudouridine synthase 7 isoform X1 [Nicotiana attenuata]) HSP 1 Score: 104.76 bits (260), Expect = 6.791e-22 Identity = 72/207 (34.78%), Postives = 106/207 (51.21%), Query Frame = 0
Query: 2 EEDK-AGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKNKAQ--SEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVR--REAEEREGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGKEEGREGETEKE----KVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNE 199
EED +G ++ V+LP+PG V+YP N++GE Y L Q G+ L + +K + S + G YR++ +K DF W+L Y + LA++D D + + ++++ RE G E Y A EGG+ +G EE E + E + + AL LSFTLP S YATM +REL+K ST+ K LNE
Sbjct: 536 EEDLISGTYTIEDVLLPLPGSRVIYPSNDIGEVYCDLAQKDGISLTETAHKIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAQTDFDAIAKSVKKSKVREEKSTNGSEELAADYGTSSAI-------SEGGDMLPGKGREEKINSETMQSEKSQSGGNAQESQMALKLSFTLPASCYATMAVRELLKTSTSVAFHKSLNE 735
BLAST of EWM25559.1 vs. NCBI_GenBank
Match: gi|1102288987|gb|OIT35437.1| (hypothetical protein A4A49_30459 [Nicotiana attenuata]) HSP 1 Score: 104.76 bits (260), Expect = 7.588e-22 Identity = 72/207 (34.78%), Postives = 106/207 (51.21%), Query Frame = 0
Query: 2 EEDK-AGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKNKAQ--SEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVR--REAEEREGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGKEEGREGETEKE----KVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNE 199
EED +G ++ V+LP+PG V+YP N++GE Y L Q G+ L + +K + S + G YR++ +K DF W+L Y + LA++D D + + ++++ RE G E Y A EGG+ +G EE E + E + + AL LSFTLP S YATM +REL+K ST+ K LNE
Sbjct: 513 EEDLISGTYTIEDVLLPLPGSRVIYPSNDIGEVYCDLAQKDGISLTETAHKIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAQTDFDAIAKSVKKSKVREEKSTNGSEELAADYGTSSA-------ISEGGDMLPGKGREEKINSETMQSEKSQSGGNAQESQMALKLSFTLPASCYATMAVRELLKTSTSVAFHKSLNE 712
BLAST of EWM25559.1 vs. NCBI_GenBank
Match: gi|723662080|ref|XP_010327742.1| (PREDICTED: multisubstrate pseudouridine synthase 7 isoform X2 [Solanum lycopersicum]) HSP 1 Score: 103.99 bits (258), Expect = 1.421e-21 Identity = 73/205 (35.61%), Postives = 106/205 (51.71%), Query Frame = 0
Query: 2 EED-KAGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKNKAQ--SEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVRREAEE--REGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGKEEGRE--GETEKEKVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNE 199
EED K+G +D V+LP+ G V+YP N++GE Y L Q G+ L + +K + S + G YR++ +K DF W+L Y + LAE+D DV+ + + E G +E G++ G EET E G + E + G E+ ++ AL LSFTLP S YATM +REL+K ST+ K LN+
Sbjct: 531 EEDLKSGTYTIDDVLLPLSGSRVIYPSNDIGEVYRDLAQKDGISLTETAHKIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAETDFDVIAKSVKSKVIEEVPSNGSKELPADSSAISVGGDMLSGKVC-----EETINNEAGMQSEKSQSGGNAEESQM---ALKLSFTLPASCYATMAVRELLKTSTSVAFHKSLND 727 The following BLAST results are available for this feature:
BLAST of EWM25559.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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