EWM25559.1, cds5109 (CDS) Nannochloropsis gaditana

Overview
NameEWM25559.1
Unique Namecds5109
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:175896..176678 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25559.1
Producttrna pseudouridine synthase d
Orig transcript idgnl|cribi|Naga_100359g1.211.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:175896..176678 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003723RNA binding
GO:0009982pseudouridine synthase activity
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
IPR001656PsdUridine_synth_TruD
Homology
BLAST of EWM25559.1 vs. NCBI_GenBank
Match: gi|585107334|gb|EWM25559.1| (trna pseudouridine synthase d [Nannochloropsis gaditana])

HSP 1 Score: 511.146 bits (1315), Expect = 0.000e+0
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
Query:    1 MEEDKAGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKNKAQSEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVRREAEEREGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGKEEGREGETEKEKVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNEPVPSPTSRPPSVPSSGHTPEKVPEVSEPALKGRKGEGGEEGDGEDGDWVMVGEGGEAKSEG 260
            MEEDKAGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKNKAQSEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVRREAEEREGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGKEEGREGETEKEKVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNEPVPSPTSRPPSVPSSGHTPEKVPEVSEPALKGRKGEGGEEGDGEDGDWVMVGEGGEAKSEG
Sbjct:    1 MEEDKAGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKNKAQSEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVRREAEEREGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGKEEGREGETEKEKVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNEPVPSPTSRPPSVPSSGHTPEKVPEVSEPALKGRKGEGGEEGDGEDGDWVMVGEGGEAKSEG 260          
BLAST of EWM25559.1 vs. NCBI_GenBank
Match: gi|1083913522|ref|XP_018622549.1| (PREDICTED: multisubstrate pseudouridine synthase 7 isoform X2 [Nicotiana tomentosiformis])

HSP 1 Score: 111.309 bits (277), Expect = 4.541e-24
Identity = 75/204 (36.76%), Postives = 108/204 (52.94%), Query Frame = 0
Query:    2 EEDK-AGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKNKAQ--SEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVR--REAEEREGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGK-EEGREGETEKEKVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNE 199
            EED  +G   ++ V+LP+PG  V+YP N++GE Y  L Q  G+ L +  +K +  S   + G YR++ +K  DF W+L  Y   +  LAE+D DV+ +  ++++ RE     G E  LP  +   +     G    G   EE    E   + EE + G   +E     AL LSFTLP S YATM +REL+K ST+    K LNE
Sbjct:  535 EEDLISGTYTIEDVLLPLPGSRVIYPSNDIGEVYCDLAQKDGISLTETAHKIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAETDFDVIAKSVKKSKAREDNSANGSEE-LPADYGTSSATFEGGDMLPGKSREEKINSEARMQSEESQSGGNAQE--SQMALKLSFTLPASCYATMAVRELLKTSTSVAFHKSLNE 735          
BLAST of EWM25559.1 vs. NCBI_GenBank
Match: gi|697157552|ref|XP_009587531.1| (PREDICTED: multisubstrate pseudouridine synthase 7 isoform X1 [Nicotiana tomentosiformis] >gi|1025134878|ref|XP_016465389.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Nicotiana tabacum])

HSP 1 Score: 111.309 bits (277), Expect = 4.721e-24
Identity = 75/204 (36.76%), Postives = 108/204 (52.94%), Query Frame = 0
Query:    2 EEDK-AGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKNKAQ--SEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVR--REAEEREGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGK-EEGREGETEKEKVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNE 199
            EED  +G   ++ V+LP+PG  V+YP N++GE Y  L Q  G+ L +  +K +  S   + G YR++ +K  DF W+L  Y   +  LAE+D DV+ +  ++++ RE     G E  LP  +   +     G    G   EE    E   + EE + G   +E     AL LSFTLP S YATM +REL+K ST+    K LNE
Sbjct:  536 EEDLISGTYTIEDVLLPLPGSRVIYPSNDIGEVYCDLAQKDGISLTETAHKIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAETDFDVIAKSVKKSKAREDNSANGSEE-LPADYGTSSATFEGGDMLPGKSREEKINSEARMQSEESQSGGNAQE--SQMALKLSFTLPASCYATMAVRELLKTSTSVAFHKSLNE 736          
BLAST of EWM25559.1 vs. NCBI_GenBank
Match: gi|970004280|ref|XP_015062934.1| (PREDICTED: multisubstrate pseudouridine synthase 7 [Solanum pennellii])

HSP 1 Score: 107.071 bits (266), Expect = 1.239e-22
Identity = 74/204 (36.27%), Postives = 108/204 (52.94%), Query Frame = 0
Query:    2 EED-KAGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKNKAQ--SEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVL---VRREAEEREGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGKEEGREGETEKEKVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNE 199
            EED K+G   +D V+LP+PG  V+YP N++GE Y  L Q  G+ L +  +K +  S   + G YR++ +K  DF W+L  Y   +  LAE+D DV+   V+R+  E E    G +E  LP      +  +  G +   G+  E +   E G +  +       +    AL LSFTLP S YATM +REL+K ST+    K LN+
Sbjct:  530 EEDLKSGTYTIDDVLLPLPGSRVIYPSNDIGEVYRDLAQKDGISLTETAHKIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAETDFDVIAKSVKRKVIE-EDPANGSKE--LPAD----SSAISVGGDMLSGKVCEEKINNEAGMQSEKSQSGGNAEESQMALKLSFTLPASCYATMAVRELLKTSTSVAFHKSLND 726          
BLAST of EWM25559.1 vs. NCBI_GenBank
Match: gi|565362070|ref|XP_006347775.1| (PREDICTED: multisubstrate pseudouridine synthase 7 isoform X1 [Solanum tuberosum])

HSP 1 Score: 105.916 bits (263), Expect = 3.069e-22
Identity = 71/207 (34.30%), Postives = 104/207 (50.24%), Query Frame = 0
Query:    2 EED-KAGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKNKAQ--SEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVR------REAEEREGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGKEEGREGETEKEKVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNE 199
            EED K+G   +D V+LP+PG  V+YP N++GE Y  L Q   + L +  +K +  S   + G YR++ +K  DF W+L  Y   +  LAE+D DV+        RE +   G +E      LP      +  +  G +   G+  E +   E G +  +       +    AL LSFTLP S YATM +REL+K ST+    K LN+
Sbjct:  489 EEDLKSGTYAIDDVLLPLPGSRVIYPSNDIGEVYCDLAQKDDISLTETAHKIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAETDFDVIANSVKSKVREEDPTNGSKE------LPAD----SSAISVGGDMLSGKVCEEKINNEAGMQSEKSQSGGNAEESQMALKLSFTLPASCYATMAVRELLKTSTSVAFHKSLND 685          
BLAST of EWM25559.1 vs. NCBI_GenBank
Match: gi|1109274688|ref|XP_019161541.1| (PREDICTED: multisubstrate pseudouridine synthase 7 [Ipomoea nil])

HSP 1 Score: 105.145 bits (261), Expect = 5.357e-22
Identity = 73/217 (33.64%), Postives = 109/217 (50.23%), Query Frame = 0
Query:    2 EEDKAGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRL-EDFKNKAQSEYT-LGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVRRE--AEEREGGREGGREGGLPIYWHRFAGELRRGPEGEGGE-EEETRGGEEGGKEEGREGETEKEKV--------GSR------ALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNE 199
            E+ ++G   +D VVLP+PG  V+YP N++ + Y  L +  GV+L E   N  +   T + G YR++ +K  DF W+L  Y   ++ LAE+D D++ +    ++ R+ G    ++  L I           G   E    E E    +E G E  R  E + + V        GSR      AL ++FTLP S YATM +REL+K ST+    K LNE
Sbjct:  532 EDIRSGTYTIDDVVLPLPGSRVIYPSNDIAKIYHDLAEKDGVKLTESMHNVKEFSITNMTGSYRRVFQKPKDFEWELIAYCDGTQSLAETDWDIISKSVTGSQVRDSGSAKDKDDELSI-----------GIRTESKNIEAENNNDQELGPEPERMDEVKIKTVSQPEESLDGSRAQENQMALKMTFTLPASCYATMAVRELLKTSTSVAFHKSLNE 737          
BLAST of EWM25559.1 vs. NCBI_GenBank
Match: gi|1111029438|ref|XP_019265836.1| (PREDICTED: multisubstrate pseudouridine synthase 7 isoform X2 [Nicotiana attenuata])

HSP 1 Score: 104.76 bits (260), Expect = 6.410e-22
Identity = 72/207 (34.78%), Postives = 106/207 (51.21%), Query Frame = 0
Query:    2 EEDK-AGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKNKAQ--SEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVR--REAEEREGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGKEEGREGETEKE----KVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNE 199
            EED  +G   ++ V+LP+PG  V+YP N++GE Y  L Q  G+ L +  +K +  S   + G YR++ +K  DF W+L  Y   +  LA++D D + +  ++++ RE     G E     Y    A         EGG+    +G EE    E  + E  +     +    AL LSFTLP S YATM +REL+K ST+    K LNE
Sbjct:  535 EEDLISGTYTIEDVLLPLPGSRVIYPSNDIGEVYCDLAQKDGISLTETAHKIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAQTDFDAIAKSVKKSKVREEKSTNGSEELAADYGTSSAI-------SEGGDMLPGKGREEKINSETMQSEKSQSGGNAQESQMALKLSFTLPASCYATMAVRELLKTSTSVAFHKSLNE 734          
BLAST of EWM25559.1 vs. NCBI_GenBank
Match: gi|1111029436|ref|XP_019265835.1| (PREDICTED: multisubstrate pseudouridine synthase 7 isoform X1 [Nicotiana attenuata])

HSP 1 Score: 104.76 bits (260), Expect = 6.791e-22
Identity = 72/207 (34.78%), Postives = 106/207 (51.21%), Query Frame = 0
Query:    2 EEDK-AGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKNKAQ--SEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVR--REAEEREGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGKEEGREGETEKE----KVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNE 199
            EED  +G   ++ V+LP+PG  V+YP N++GE Y  L Q  G+ L +  +K +  S   + G YR++ +K  DF W+L  Y   +  LA++D D + +  ++++ RE     G E     Y    A         EGG+    +G EE    E  + E  +     +    AL LSFTLP S YATM +REL+K ST+    K LNE
Sbjct:  536 EEDLISGTYTIEDVLLPLPGSRVIYPSNDIGEVYCDLAQKDGISLTETAHKIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAQTDFDAIAKSVKKSKVREEKSTNGSEELAADYGTSSAI-------SEGGDMLPGKGREEKINSETMQSEKSQSGGNAQESQMALKLSFTLPASCYATMAVRELLKTSTSVAFHKSLNE 735          
BLAST of EWM25559.1 vs. NCBI_GenBank
Match: gi|1102288987|gb|OIT35437.1| (hypothetical protein A4A49_30459 [Nicotiana attenuata])

HSP 1 Score: 104.76 bits (260), Expect = 7.588e-22
Identity = 72/207 (34.78%), Postives = 106/207 (51.21%), Query Frame = 0
Query:    2 EEDK-AGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKNKAQ--SEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVR--REAEEREGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGKEEGREGETEKE----KVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNE 199
            EED  +G   ++ V+LP+PG  V+YP N++GE Y  L Q  G+ L +  +K +  S   + G YR++ +K  DF W+L  Y   +  LA++D D + +  ++++ RE     G E     Y    A         EGG+    +G EE    E  + E  +     +    AL LSFTLP S YATM +REL+K ST+    K LNE
Sbjct:  513 EEDLISGTYTIEDVLLPLPGSRVIYPSNDIGEVYCDLAQKDGISLTETAHKIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAQTDFDAIAKSVKKSKVREEKSTNGSEELAADYGTSSA-------ISEGGDMLPGKGREEKINSETMQSEKSQSGGNAQESQMALKLSFTLPASCYATMAVRELLKTSTSVAFHKSLNE 712          
BLAST of EWM25559.1 vs. NCBI_GenBank
Match: gi|723662080|ref|XP_010327742.1| (PREDICTED: multisubstrate pseudouridine synthase 7 isoform X2 [Solanum lycopersicum])

HSP 1 Score: 103.99 bits (258), Expect = 1.421e-21
Identity = 73/205 (35.61%), Postives = 106/205 (51.71%), Query Frame = 0
Query:    2 EED-KAGVVPLDRVVLPMPGVNVVYPGNEVGEHYVRLCQARGVRLEDFKNKAQ--SEYTLGGDYRKIMEKAGDFRWKLARYHQASERLAESDVDVLVRREAEE--REGGREGGREGGLPIYWHRFAGELRRGPEGEGGEEEETRGGEEGGKEEGRE--GETEKEKVGSRALILSFTLPPSTYATMLLRELMKVSTTAHEMKKLNE 199
            EED K+G   +D V+LP+ G  V+YP N++GE Y  L Q  G+ L +  +K +  S   + G YR++ +K  DF W+L  Y   +  LAE+D DV+ +    +   E    G +E           G++  G        EET   E G + E  +  G  E+ ++   AL LSFTLP S YATM +REL+K ST+    K LN+
Sbjct:  531 EEDLKSGTYTIDDVLLPLSGSRVIYPSNDIGEVYRDLAQKDGISLTETAHKIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAETDFDVIAKSVKSKVIEEVPSNGSKELPADSSAISVGGDMLSGKVC-----EETINNEAGMQSEKSQSGGNAEESQM---ALKLSFTLPASCYATMAVRELLKTSTSVAFHKSLND 727          
The following BLAST results are available for this feature:
BLAST of EWM25559.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107334|gb|EWM25559.1|0.000e+0100.00trna pseudouridine synthase d [Nannochloropsis gad... [more]
gi|1083913522|ref|XP_018622549.1|4.541e-2436.76PREDICTED: multisubstrate pseudouridine synthase 7... [more]
gi|697157552|ref|XP_009587531.1|4.721e-2436.76PREDICTED: multisubstrate pseudouridine synthase 7... [more]
gi|970004280|ref|XP_015062934.1|1.239e-2236.27PREDICTED: multisubstrate pseudouridine synthase 7... [more]
gi|565362070|ref|XP_006347775.1|3.069e-2234.30PREDICTED: multisubstrate pseudouridine synthase 7... [more]
gi|1109274688|ref|XP_019161541.1|5.357e-2233.64PREDICTED: multisubstrate pseudouridine synthase 7... [more]
gi|1111029438|ref|XP_019265836.1|6.410e-2234.78PREDICTED: multisubstrate pseudouridine synthase 7... [more]
gi|1111029436|ref|XP_019265835.1|6.791e-2234.78PREDICTED: multisubstrate pseudouridine synthase 7... [more]
gi|1102288987|gb|OIT35437.1|7.588e-2234.78hypothetical protein A4A49_30459 [Nicotiana attenu... [more]
gi|723662080|ref|XP_010327742.1|1.421e-2135.61PREDICTED: multisubstrate pseudouridine synthase 7... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5121rna5121Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications