rna5118, rna5118 (mRNA) Nannochloropsis gaditana

Overview
Namerna5118
Unique Namerna5118
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1217
Alignment locationCM002465.1:168540..169536 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100664g2.4025.mrna
Orig protein idgnl|cribi|Naga_100664g2.4025
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:168540..169536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100664g2gene4941Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5118rna5118-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25567.1cds5106Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5118 ID=rna5118|Name=rna5118|organism=Nannochloropsis gaditana|type=mRNA|length=1217bp
CCTCCCTCCCTCCCTCCCTCCCCTGTCTTCCACCTCCTCTCGTCCCCAGG
TAAATACTACGACACCAAGCACTTGGTGCCCCACCGAGACGCCAGCGGGA
AGCTATCCAATGTGAATTTTTCCCTAGAGGAGATCCATATCGAGGCGCCG
GCCAAGCTGGCCGAGCTGGCCAAGTCAGTGGGCGTGAGCCACTTCCTGCA
CGTCTCTGCCTTGGGGGCGGACAAGGACTCGCCCGTGCGATGGTTGGCGA
CGAAGGGACAGGGCGAGGAAGCCTTGAAAAGCGTCTTCCCTCGGGCGACG
ATTGTCCGTCCGGGACGACTTTTTGGCCCCGAGGACCGGCTCCTGAACTG
GTTTGCGCAGAACGCGGCGTCCTTTGGGGTCATCCCGCTCTTCAACGGCG
GCAATGCATTGCTGCAGCCCACCTACGCCTCTGACGTGGTGGACGCCATG
GTAAAGATCATCGAGGACCCTGAGGATTATGAGGGCAAGACCTTCGAACT
GGCGGGAGAGCACAACTTTACGTGGAGGGAACTCATGGACTTTACCTTTG
ATATCACGTACCAAAAGCCCCGGGTGGTAGACCTCCCTCTGGCAGTGGGC
GAGATGGCGGCATTTGGACTCTCCCAGTTGCCCAACCCATTGTTGACCAT
AGACGATGCCAAGCTCATGTCCACGGACGTCATTCTTGAGCCATCATCTT
CGGCCATGACCTTCCAGGACCTCCATATCAAGCCTACACCGCTGGAGAAA
GTGGCATTCAACTACCTTTACAGGTACCGAACCGATGGCGGTCATTTTCC
TTACGCCGAAGGGTATCATTGAAGGAACTCGATCAGATGCATCCCTATAT
CAGGACTCTGGTTTTCAACCGGCGAATGGTTCATGTATTGTGGAACGGAT
ATAAATTGCATGGCTTATCGGAAAAGAAACTTGAAAATTGGCGGGGCATT
TCCCAGGGGGAAGAGATTCAGACCTTAGAGATATCATGCACTTTGAGGAA
AATGGGAATAGGTCAGGTTTTTGAAAGACGAATAAACTGGCGAAAGCCAC
AGGGGAAATTCGACATCAGATTGTTGCTGCGATATTTTTCTTTGGATGTG
GTGAGATTGAAATTCTGTGCGACCACTTTTGCAACCCTTCTATCAATCTT
GAAAGGACACGAGTGTGTCGACGCTTACTTGCATGAAAAAGAAGAGAGAA
TGCAATGCAGCATCCCC
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protein sequence of rna5118

>rna5118-protein ID=rna5118-protein|Name=rna5118|organism=Nannochloropsis gaditana|type=polypeptide|length=142bp
MYAVTGLVVGACLGGRKPACCLKDTRRDPPAALASQPPSLNHGQYPNACP
TGSLGRGDGLRWLESRPLYSAALVFWASICSLNWERPAFGCTWPTGATSR
MSVRTKSRLIWGSGPRCPTACGTRTRLNGCWKAVTSPSIALV
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mRNA from alignment at CM002465.1:168540..169536-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5118 ID=rna5118|Name=rna5118|organism=Nannochloropsis gaditana|type=mRNA|length=997bp|location=Sequence derived from alignment at CM002465.1:168540..169536- (Nannochloropsis gaditana)
ATGTACGCTGTCACAGGCCTTGTGGTCGGTGCTTGCCTTGGTGGTCGTAA
GCCTGCCTGTTGCCTGAAGGACACGCGGAGAGATCCTCCAGCAGCCTTGG
CTAGCCAGCCCCCTTCACTTAATCATGGCCAATACCCGAATGCTTGCCCG
ACGGGCGTTCAGTACCGGAAACTTTGGCGTGGGCAAGCTTGAGCAGGGTT
TCAAAGAGTTTGGGCCGGGGGGACGGTCTTCGGTGGCTGGAATCACGGCC
TCTTTATTCGGCGGGTGAGCGAGGGGAAAGGGAGAAAAAGAGGGAGGGAT
GTAGGGGGGCGAAAGATTGGTGGCGAAAGAGCGTATGGGAAAGATGTACA
ACAAGAAGAAGCTTCCATAGGATGCGAATTTGACGGCACGAGAGGGAGTC
CAAAGAATGCTCTTACCTGTCGCCCCCCTGGAACCCATGAGTCCCCTCCT
TAATTCTCAGCGAACATCCTTTTTTTCCCCTCCAGCACTGGTTTTCTGGG
CAAGTATTTGCAGTTTGAATTGGGAAAGACCGGCTTTCGGCTGTACCTGG
CCAACCGGGGCGACGAGCAGGATGTCCGTGCGTACAAAGTCGCGTTTGAT
TTGGGGCAGGTCAGCAAGGGAGTCGGGAGAGGAAGGGAATGGGAGGGGGA
AAACACAGGGAAGGCAAAGAGAGAGAGGGAAAGGGGGAAGGGCCAGGAAT
GGGGTTACGATGGCCGGGGGAGCAACATTGAAGAGTGATGAGGAGGACGG
AGAAGGCAGCACAGCCGGGGGGAGAGCAAAGGTCTCGGCTCAGGCTATTT
TTACCCCTCATGTGGTGGAGGTAGCTCAGAGCCTCCTCTTCCGTTCCAAG
GGCTTCCCCTCACTCCCTTGCCCCGCTCCTTTTCGCATTTCCTCTCTCTT
TATCAGTGGGCCTCGGTGCCCTACAGCCTGCGGGACGAGGACTCGATTAA
ACGGGTGCTGGAAGGCAGTGACATCGCCATCAATTGCATTGGTGTGA
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Coding sequence (CDS) from alignment at CM002465.1:168540..169536-

>rna5118 ID=rna5118|Name=rna5118|organism=Nannochloropsis gaditana|type=CDS|length=1716bp|location=Sequence derived from alignment at CM002465.1:168540..169536- (Nannochloropsis gaditana)
TGGGCCTCGGTGCCCTACAGCCTGCGGGACGAGGACTCGATTAAACGGGT
GCTGGAAGGCAGTGACATCGCCATCAATTGCATTGGTGTGACACTGGTTT
TCTGGGCAAGTATTTGCAGTTTGAATTGGGAAAGACCGGCTTTCGGCTGT
ACCTGGCCAACCGGGGCGACGAGCAGGATGTCCGTGCGTACAAAGTCGCG
TTTGATTTGGGGCAGAGTTTGGGCCGGGGGGACGGTCTTCGGTGGCTGGA
ATCACGGCCTCTTTATTCGGCGGATGTACGCTGTCACAGGCCTTGTGGTC
GGTGCTTGCCTTGGTGGTCGTAAGCCTGCCTGTTGCCTGAAGGACACGCG
GAGAGATCCTCCAGCAGCCTTGGCTAGCCAGCCCCCTTCACTTAATCATG
GCCAATACCCGAATGCTTGCCCGACGGGCTGGGCCTCGGTGCCCTACAGC
CTGCGGGACGAGGACTCGATTAAACGGGTGCTGGAAGGCAGTGACATCGC
CATCAATTGCATTGGTGTGACACTGGTTTTCTGGGCAAGTATTTGCAGTT
TGAATTGGGAAAGACCGGCTTTCGGCTGTACCTGGCCAACCGGGGCGACG
AGCAGGATGTCCGTGCGTACAAAGTCGCGTTTGATTTGGGGCAGAGTTTG
GGCCGGGGGGACGGTCTTCGGTGGCTGGAATCACGGCCTCTTTATTCGGC
GGATGTACGCTGTCACAGGCCTTGTGGTCGGTGCTTGCCTTGGTGGTCGT
AAGCCTGCCTGTTGCCTGAAGGACACGCGGAGAGATCCTCCAGCAGCCTT
GGCTAGCCAGCCCCCTTCACTTAATCATGGCCAATACCCGAATGCTTGCC
CGACGGGCTGGGCCTCGGTGCCCTACAGCCTGCGGGACGAGGACTCGATT
AAACGGGTGCTGGAAGGCAGTGACATCGCCATCAATTGCATTGGTGTGAC
ACTGGTTTTCTGGGCAAGTATTTGCAGTTTGAATTGGGAAAGACCGGCTT
TCGGCTGTACCTGGCCAACCGGGGCGACGAGCAGGATGTCCGTGCGTACA
AAGTCGCGTTTGATTTGGGGCAGAGTTTGGGCCGGGGGGACGGTCTTCGG
TGGCTGGAATCACGGCCTCTTTATTCGGCGGATGTACGCTGTCACAGGCC
TTGTGGTCGGTGCTTGCCTTGGTGGTCGTAAGCCTGCCTGTTGCCTGAAG
GACACGCGGAGAGATCCTCCAGCAGCCTTGGCTAGCCAGCCCCCTTCACT
TAATCATGGCCAATACCCGAATGCTTGCCCGACGGGCTGGGCCTCGGTGC
CCTACAGCCTGCGGGACGAGGACTCGATTAAACGGGTGCTGGAAGGCAGT
GACATCGCCATCAATTGCATTGGTGTGACACTGGTTTTCTGGGCAAGTAT
TTGCAGTTTGAATTGGGAAAGACCGGCTTTCGGCTGTACCTGGCCAACCG
GGGCGACGAGCAGGATGTCCGTGCGTACAAAGTCGCGTTTGATTTGGGGC
AGAGTTTGGGCCGGGGGGACGGTCTTCGGTGGCTGGAATCACGGCCTCTT
TATTCGGCGGATGTACGCTGTCACAGGCCTTGTGGTCGGTGCTTGCCTTG
GTGGTCGTAAGCCTGCCTGTTGCCTGAAGGACACGCGGAGAGATCCTCCA
GCAGCCTTGGCTAGCCAGCCCCCTTCACTTAATCATGGCCAATACCCGAA
TGCTTGCCCGACGGGC
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Synonyms
Publications