rna5114, rna5114 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5114
Unique Name	rna5114
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	845
Alignment location	CM002465.1:159260..161415 +

Link to JBrowse

Properties


Property Name	Value
Product	chaperone protein
Orig transcript id	gnl\|cribi\|Naga_100463g2.3050.mrna
Orig protein id	gnl\|cribi\|Naga_100463g2.3050
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:159260..161415 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100463g2	gene4937	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5114	rna5114-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25569.1	cds5102	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:159260..161415+
coding sequence from alignment at CM002465.1:159260..161415+

mRNA sequence

>rna5114 ID=rna5114|Name=rna5114|organism=Nannochloropsis gaditana|type=mRNA|length=845bp
CACCATGGCGGGATTGTGGGCAGCATGGGTGCGCATACTGTTTGACACAT
TCTTTCGTTCCCCCCATCATCCAGGATCTTTCTCAGACCAATGTCAACCA
CGCGCCACATTCCAACCCTCCGCGATGAGAACGCGTACGGTGCTCACACC
TTGCACAAAGGGAATGTCGCGAATGTCGACCGTCCCCTGAAACCAGTGGG
GGCTTCTTCCTCTGTGATCGGCCCTTCCGGTTTGACTGGGGGAAAGATAG
TGGCTCGCAAGGCTCTGGGATCTCTATCTGGCTCGTCGCTTCCCTCCTCA
CACAAGACTCCCGGGCAAGAGGAGGACCAAACACTGATCAAACAAGGCCT
GGGAAACAAAGTCTCTAAGCCCCGACGGGCATTGGGAGAGATCACCAACA
GGGTGGGACCAGGCCATAACAGCAGCGGCGGCGGCAAAGACCCGTACTCC
ATGACCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCTTCCTC
GCAGAAGCCAACCTGTCGAGGGAAGAAGGGATCGACCCCGGGGCTTTCCT
CTGGTGGCCCTCCCTCCCTCTCGTCCTCCCTGCTTGCCGACCTACCGACC
TTCTCGGATGAGGAGGAGGCAGGGGAGGAGCCAGGGGAAGTGGAGCTGGC
AGCAGGCAGGCTCGGGGTCGAGGAGGAGAGACTAGTGGCCTTGAAAAGGG
CCGCCAGGGAGAGGGCGGAGGAGGAACAATTTCTGTCTTCCATCAAGGAA
GGGGGCCGGGGCCCTGTGGACTTCGGGAGGGAGGACGAGGAAGATGCGGC
TTTCGAGAGGGAAATGCAAAAATTGCTGCTCGCGGACATGCAAGG

protein sequence of rna5114

>rna5114-protein ID=rna5114-protein|Name=rna5114|organism=Nannochloropsis gaditana|type=polypeptide|length=200bp
MKDYYVILQVSRSATLQEIKVAYKNFALKLHPDVTGNNEDKTRIFKQLTE
AYNILSDQDARQKYDSKLGISRVSTFYRPGGSHPGGEGDIRAPRPPPDFK
IFDHDEWNAWHYGEGEGVHKEPFVKRRNPFMDIRPDNKGAQFFVRQKTKE
TQSVIDQSYKRGKAEKDLIVERMKARRAARMANRGYNEDSASAGGSCVIA

mRNA from alignment at CM002465.1:159260..161415+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5114 ID=rna5114|Name=rna5114|organism=Nannochloropsis gaditana|type=mRNA|length=2156bp|location=Sequence derived from alignment at CM002465.1:159260..161415+ (Nannochloropsis gaditana)
TACCAAGTGATGTTTTGTCCATCATGTGGACGTAGCATGGAATAATAATT
GCTTGTCAAAATATTTACAATTATTCTACCGGATACGCGAACCATTATTC
GTGAGATTGGATTGGATACTTACAGACAATCGTAAGCGTATGTCTGAGCC
TCCAACACACTCTCCTCACTCTTTCAAATATTTATTTGCATGTCACACTA
TGACGGGATAGGTGAGAAAAGATATCAGAAAGGCAACTTCACACGTTGTT
GACGGGGCGTAATCATAGAAGCCCAAGTGCTAAAAGTACTGACCACGAGA
AGTTTGAGCACTTCTGGTttcgtcgtcatcctcctgaATACAAGTGGAGA
CCACCATCGACATACCCGTGTAGTGGCGCATAACGCGTTAAGGCTAGGCT
CCACAGTGGGTGCGGCAGCCTGAGTCTTCGGCGCGCAAACCATTTACATC
ACCTCGTGACGCTGTGGGGTTGGTGGCTGCTGCGCTCTGCGAAACGAAGG
TTTCCTTCCGCACCAAGCTTCCACACTATCAAACAGACACTGAAGCACTT
TGCAGCGTGTTCCGTCCTCACACATATCCTCACGGCGTGTCTCGACGCCG
CCGTTACCGCCAAAAATACCTCCATTGTGGTATCTGAGAAGGCAGGATGA
AAGATTACTACGTTATCCTCCAAGTCTCCAGGTGACAAGCGCAGTGAAAG
TCGTCATGATTTCTTGGAGGGGAGAGGTTAATGGTTCTTTTTCAACTACG
CTTTCTGTGATACTCTGAGATGATCTAGCGTCTTATCGTCATGACGCCCG
CTCATTTCTCTGCACGTTTTCTTTGTCTTTACAGGTCCGCTACCCTCCAA
GAAATCAAAGTGGCGTACAAGAATTTTGCCTTGAAGCTGCATCCAGATGT
GACCGGtatgaagggagggagtgagggtgGTGGTACGATAGGGGATGCTT
TTACCCGCCCGTCCTCGGTGTCAGGCCTGGTCAAAGGGCGCGACTCGTTT
AATTTGTTGAGAGACGAGGGGAACGAGATGGCTGGTACACTCATCCCAGG
CATCTTTCCTTCATTCAACCTCCTGATTGCCTTCCGTCGCTCGTGGCTCC
CAGGTAACAATGAGGACAAGACACGGATTTTCAAGCAATTGACAGAAGCC
TACAACATCCTCTCGGACCAAGATGCCCGGCAAAAATACGACTCCAAGCT
GGGGATATCCCGGGTCTCTACGTTCTATCGCCCCGGAGGCAGTCATCCAG
GGGGCGAAGGCGATATCCGAgccccacggcccccgccAGACTTCAAGATA
TTTGACCACGATGAATGGAACGCTTGGCAttacggggagggagagggggt
ccACAAGGAACCGTTCGTCAAGAGGTATGGAGGGATGGCAAGGAATtggg
tgggggagaagaagagggtggagatgTAGAAGTCTTAGGTGGTGTCTCCG
ATGTCCTCATCATCATACTTGCTGCTCACCGTGGCAAAGAGGCAATGCGG
GGTGTGATTACGTCGACTGATCACCGGGTCTGCGAAATGATGCAGGGTTT
CTTCTtacttttcccttcctccccggcccctcccctttatGATTCTCAAT
CTATGCTTCAGGCGGAATCCTTTTATGGACATCAGACCAGACAACAAAGG
CGCGCAGTTCTTCGTACGGCAGAAAACCAAAGAAACCCAAAGCGTCATAG
ATCAGTCGTataaaagagggaaagcagagaAGGATTTGATTGTAGAAAGA
ATGAAGGCACGCAGAGCGGCACGGATGGCAAATCGGGGATATAATGAGGA
CAGTGCCAGTGCCGGAGGCTCCTGTGTGATAGCATGAGTGGGCTTTCCCA
TCACTCAAAGATGTGCCCTCCCTGTCGCCGGGGACTCTGACAAAATGCAT
TGAAATGCGCATTGAATGTGAAGCGGCATCGACTTGGGCATTGGGACATG
TTGAATACACTGTCTCAAGCGTGCAATAGATAATAGAATGTAAAATAGTA
GGAAAATGGTTGAAAACATAGCTAACAAGGCTTGACAGCTtgtctttctc
tttttttaaaGTTGCCTTTTAATCGTTTGCCTATCCTGCATACAGATTGT
CAGCCCTACCATGAATCAATTAGTAATGGTAATAATGCATGGCGTCTAAA
TGAGCT

Coding sequence (CDS) from alignment at CM002465.1:159260..161415+

>rna5114 ID=rna5114|Name=rna5114|organism=Nannochloropsis gaditana|type=CDS|length=2412bp|location=Sequence derived from alignment at CM002465.1:159260..161415+ (Nannochloropsis gaditana)
ATGAAAGATTACTACGTTATCCTCCAAGTCTCCAGGTCCGCTACCCTCCA
AGAAATCAAAGTGGCGTACAAGAATTTTGCCTTGAAGCTGCATCCAGATG
TGACCGGTAACAATGAGGACAAGACACGGATTTTCAAGCAATTGACAGAA
GCCTACAACATCCTCTCGGACCAAGATGCCCGGCAAAAATACGACTCCAA
GCTGGGGATATCCCGGGTCTCTACGTTCTATCGCCCCGGAGGCAGTCATC
CAGGGGGCGAAGGCGATATCCGAgccccacggcccccgccAGACTTCAAG
ATATTTGACCACGATGAATGGAACGCTTGGCAttacggggagggagaggg
ggtccACAAGGAACCGTTCGTCAAGAGGCGGAATCCTTTTATGGACATCA
GACCAGACAACAAAGGCGCGCAGTTCTTCGTACGGCAGAAAACCAAAGAA
ACCCAAAGCGTCATAGATCAGTCGTataaaagagggaaagcagagaAGGA
TTTGATTGTAGAAAGAATGAAGGCACGCAGAGCGGCACGGATGGCAAATC
GGGGATATAATGAGGACAGTGCCAGTGCCGGAGGCTCCTGTGTGATAGCA
TGAATGAAAGATTACTACGTTATCCTCCAAGTCTCCAGGTCCGCTACCCT
CCAAGAAATCAAAGTGGCGTACAAGAATTTTGCCTTGAAGCTGCATCCAG
ATGTGACCGGTAACAATGAGGACAAGACACGGATTTTCAAGCAATTGACA
GAAGCCTACAACATCCTCTCGGACCAAGATGCCCGGCAAAAATACGACTC
CAAGCTGGGGATATCCCGGGTCTCTACGTTCTATCGCCCCGGAGGCAGTC
ATCCAGGGGGCGAAGGCGATATCCGAgccccacggcccccgccAGACTTC
AAGATATTTGACCACGATGAATGGAACGCTTGGCAttacggggagggaga
gggggtccACAAGGAACCGTTCGTCAAGAGGCGGAATCCTTTTATGGACA
TCAGACCAGACAACAAAGGCGCGCAGTTCTTCGTACGGCAGAAAACCAAA
GAAACCCAAAGCGTCATAGATCAGTCGTataaaagagggaaagcagagaA
GGATTTGATTGTAGAAAGAATGAAGGCACGCAGAGCGGCACGGATGGCAA
ATCGGGGATATAATGAGGACAGTGCCAGTGCCGGAGGCTCCTGTGTGATA
GCATGAATGAAAGATTACTACGTTATCCTCCAAGTCTCCAGGTCCGCTAC
CCTCCAAGAAATCAAAGTGGCGTACAAGAATTTTGCCTTGAAGCTGCATC
CAGATGTGACCGGTAACAATGAGGACAAGACACGGATTTTCAAGCAATTG
ACAGAAGCCTACAACATCCTCTCGGACCAAGATGCCCGGCAAAAATACGA
CTCCAAGCTGGGGATATCCCGGGTCTCTACGTTCTATCGCCCCGGAGGCA
GTCATCCAGGGGGCGAAGGCGATATCCGAgccccacggcccccgccAGAC
TTCAAGATATTTGACCACGATGAATGGAACGCTTGGCAttacggggaggg
agagggggtccACAAGGAACCGTTCGTCAAGAGGCGGAATCCTTTTATGG
ACATCAGACCAGACAACAAAGGCGCGCAGTTCTTCGTACGGCAGAAAACC
AAAGAAACCCAAAGCGTCATAGATCAGTCGTataaaagagggaaagcaga
gaAGGATTTGATTGTAGAAAGAATGAAGGCACGCAGAGCGGCACGGATGG
CAAATCGGGGATATAATGAGGACAGTGCCAGTGCCGGAGGCTCCTGTGTG
ATAGCATGAATGAAAGATTACTACGTTATCCTCCAAGTCTCCAGGTCCGC
TACCCTCCAAGAAATCAAAGTGGCGTACAAGAATTTTGCCTTGAAGCTGC
ATCCAGATGTGACCGGTAACAATGAGGACAAGACACGGATTTTCAAGCAA
TTGACAGAAGCCTACAACATCCTCTCGGACCAAGATGCCCGGCAAAAATA
CGACTCCAAGCTGGGGATATCCCGGGTCTCTACGTTCTATCGCCCCGGAG
GCAGTCATCCAGGGGGCGAAGGCGATATCCGAgccccacggcccccgccA
GACTTCAAGATATTTGACCACGATGAATGGAACGCTTGGCAttacgggga
gggagagggggtccACAAGGAACCGTTCGTCAAGAGGCGGAATCCTTTTA
TGGACATCAGACCAGACAACAAAGGCGCGCAGTTCTTCGTACGGCAGAAA
ACCAAAGAAACCCAAAGCGTCATAGATCAGTCGTataaaagagggaaagc
agagaAGGATTTGATTGTAGAAAGAATGAAGGCACGCAGAGCGGCACGGA
TGGCAAATCGGGGATATAATGAGGACAGTGCCAGTGCCGGAGGCTCCTGT
GTGATAGCATGA

Synonyms

Publications