EWM25569.1, cds5102 (CDS) Nannochloropsis gaditana

Overview
NameEWM25569.1
Unique Namecds5102
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:159906..159940 +
Alignment locationCM002465.1:160094..160164 +
Alignment locationCM002465.1:160363..160633 +
Alignment locationCM002465.1:160871..161096 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25569.1
Productchaperone protein
Orig transcript idgnl|cribi|Naga_100463g2.3050.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:159906..159940 +
CM002465.1supercontigCM002465.1:160094..160164 +
CM002465.1supercontigCM002465.1:160363..160633 +
CM002465.1supercontigCM002465.1:160871..161096 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR018253DnaJ_domain_CS
IPR001623DnaJ_domain
Homology
BLAST of EWM25569.1 vs. NCBI_GenBank
Match: gi|585107346|gb|EWM25569.1| (chaperone protein [Nannochloropsis gaditana])

HSP 1 Score: 419.083 bits (1076), Expect = 2.172e-148
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
Query:    1 MKDYYVILQVSRSATLQEIKVAYKNFALKLHPDVTGNNEDKTRIFKQLTEAYNILSDQDARQKYDSKLGISRVSTFYRPGGSHPGGEGDIRAPRPPPDFKIFDHDEWNAWHYGEGEGVHKEPFVKRRNPFMDIRPDNKGAQFFVRQKTKETQSVIDQSYKRGKAEKDLIVERMKARRAARMANRGYNEDSASAGGSCVIA 200
            MKDYYVILQVSRSATLQEIKVAYKNFALKLHPDVTGNNEDKTRIFKQLTEAYNILSDQDARQKYDSKLGISRVSTFYRPGGSHPGGEGDIRAPRPPPDFKIFDHDEWNAWHYGEGEGVHKEPFVKRRNPFMDIRPDNKGAQFFVRQKTKETQSVIDQSYKRGKAEKDLIVERMKARRAARMANRGYNEDSASAGGSCVIA
Sbjct:    1 MKDYYVILQVSRSATLQEIKVAYKNFALKLHPDVTGNNEDKTRIFKQLTEAYNILSDQDARQKYDSKLGISRVSTFYRPGGSHPGGEGDIRAPRPPPDFKIFDHDEWNAWHYGEGEGVHKEPFVKRRNPFMDIRPDNKGAQFFVRQKTKETQSVIDQSYKRGKAEKDLIVERMKARRAARMANRGYNEDSASAGGSCVIA 200          
BLAST of EWM25569.1 vs. NCBI_GenBank
Match: gi|299470626|emb|CBN78567.1| (Heat shock protein 40 like protein/ DnaJ domain containing protein [Ectocarpus siliculosus])

HSP 1 Score: 113.62 bits (283), Expect = 4.547e-28
Identity = 61/153 (39.87%), Postives = 90/153 (58.82%), Query Frame = 0
Query:    1 MKDYYVILQVSRSATLQEIKVAYKNFALKLHPDVTGNNEDKTRIFKQLTEAYNILSDQDARQKYDSKLGISRV---STFYRPGGSHPGGEGDIRAPRPPPDFKIFDHDEWNAWHYGEGEGVHKEPFVKRRNPFMDIRPDNKGAQFFVRQKTKE 150
            M+DYY IL+V+R+AT  EIK AY+  AL +HPDV   ++     FK  +EAY++L+D + R+ YD  LG+ +V   ST +         +  +   +PPP  KI +  EW AWHYG  + V KE FV+  N ++D+   N+   +F RQ+ KE
Sbjct:    1 MRDYYAILRVARTATNSEIKAAYRQIALAVHPDVNKGDKGSEDEFKDASEAYSVLADTEQRRIYDRTLGVRKVNSSSTRWADAAKKTKAQQPLYTAKPPPGMKIHNEGEWKAWHYGV-DAVQKEAFVQEAN-WLDLE-GNRHQAYFRRQEKKE 150          
BLAST of EWM25569.1 vs. NCBI_GenBank
Match: gi|567945817|gb|ETK71628.1| (hypothetical protein L915_21157 [Phytophthora parasitica] >gi|567974470|gb|ETL25063.1| hypothetical protein L916_21032 [Phytophthora parasitica] >gi|568033851|gb|ETM31543.1| hypothetical protein L914_20902 [Phytophthora parasitica] >gi|570966073|gb|ETP29192.1| hypothetical protein F442_21623 [Phytophthora parasitica P10297])

HSP 1 Score: 84.7297 bits (208), Expect = 4.566e-17
Identity = 50/116 (43.10%), Postives = 68/116 (58.62%), Query Frame = 0
Query:    3 DYYVILQVSRSATLQEIKVAYKNFALKLHPDVTGNNEDKTRIFKQLTEAYNILSDQDARQKYDSKLGISRVSTFYRPGGS-HP----GGEGDIRAPRPPPDFKIFDHDEWNAWHYG 113
            DYY +L V+R+A+ +EIK AY   A  LHPDVTGN+E K   FK ++EA+++LSD   R++YD+        T+   G S HP    GG  D+RA RP       + + W A HYG
Sbjct:    5 DYYRVLNVARTASFKEIKAAYFQLAKSLHPDVTGNDESKAERFKHVSEAHSVLSDPQKRREYDASRPAESFRTYDTSGMSQHPYAATGGAPDLRA-RP---LYGINEEIWLAHHYG 116          
BLAST of EWM25569.1 vs. NCBI_GenBank
Match: gi|568003945|gb|ETL78282.1| (hypothetical protein L917_20889 [Phytophthora parasitica] >gi|970627872|gb|KUF75681.1| Chaperone protein DnaJ [Phytophthora nicotianae] >gi|970662196|gb|KUF99605.1| RAC-beta serine/threonine-protein kinase [Phytophthora nicotianae])

HSP 1 Score: 84.7297 bits (208), Expect = 5.462e-17
Identity = 50/116 (43.10%), Postives = 68/116 (58.62%), Query Frame = 0
Query:    3 DYYVILQVSRSATLQEIKVAYKNFALKLHPDVTGNNEDKTRIFKQLTEAYNILSDQDARQKYDSKLGISRVSTFYRPGGS-HP----GGEGDIRAPRPPPDFKIFDHDEWNAWHYG 113
            DYY +L V+R+A+ +EIK AY   A  LHPDVTGN+E K   FK ++EA+++LSD   R++YD+        T+   G S HP    GG  D+RA RP       + + W A HYG
Sbjct:    5 DYYRVLNVARTASFKEIKAAYFQLAKSLHPDVTGNDESKAERFKHVSEAHSVLSDPQKRREYDASRPAESFRTYDTSGMSQHPYAATGGAPDLRA-RP---LYGINEEIWLAHHYG 116          
BLAST of EWM25569.1 vs. NCBI_GenBank
Match: gi|301107426|ref|XP_002902795.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097913|gb|EEY55965.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 83.5741 bits (205), Expect = 1.721e-16
Identity = 47/116 (40.52%), Postives = 69/116 (59.48%), Query Frame = 0
Query:    3 DYYVILQVSRSATLQEIKVAYKNFALKLHPDVTGNNEDKTRIFKQLTEAYNILSDQDARQKYDSKLGISRVSTFYRPGGS-HP----GGEGDIRAPRPPPDFKIFDHDEWNAWHYG 113
            DYY +L V+R+++ +EIK AY   A  LHPDVTGN+E K   FK ++EA+++LSD   R++YD+        ++   G + HP    GG  D+RA RP       + + W A+HYG
Sbjct:    5 DYYRVLNVARTSSFKEIKTAYFGLAKSLHPDVTGNDESKAERFKHVSEAHSVLSDPQKRREYDASRPAESFRSYDTSGTTQHPYVATGGAPDLRA-RP---LYGINEEIWLAYHYG 116          
BLAST of EWM25569.1 vs. NCBI_GenBank
Match: gi|669146370|ref|XP_008608747.1| (hypothetical protein SDRG_04838 [Saprolegnia diclina VS20] >gi|530739572|gb|EQC37814.1| hypothetical protein SDRG_04838 [Saprolegnia diclina VS20])

HSP 1 Score: 78.9518 bits (193), Expect = 8.921e-15
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = 0
Query:    3 DYYVILQVSRSATLQEIKVAYKNFALKLHPDVTGNNEDKTRIFKQLTEAYNILSDQDARQKYDSKLGI-SRVSTFYRPGGSHPGGEGDIRAPRPPPDFKIFDHDEWNAWHYG 113
            DYY ++ ++R+AT ++IK AY   A +LHPDV GN+ +K  +FK+++EA ++LSD   R +YD++     R  T Y      P G+   RA  P       + D W A HYG
Sbjct:   17 DYYRVMNLTRNATQKDIKRAYLKLARQLHPDVNGNDLEKAALFKKVSEANSVLSDPAKRAEYDNRFSYRDRGETHYS-----PKGQTSARASAPRGSHYGINEDVWYAHHYG 123          
BLAST of EWM25569.1 vs. NCBI_GenBank
Match: gi|813163647|ref|XP_012202884.1| (hypothetical protein SPRG_08251 [Saprolegnia parasitica CBS 223.65] >gi|641532417|gb|KDO26448.1| hypothetical protein SPRG_08251 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 78.1814 bits (191), Expect = 1.450e-14
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = 0
Query:    3 DYYVILQVSRSATLQEIKVAYKNFALKLHPDVTGNNEDKTRIFKQLTEAYNILSDQDARQKYDSKLGI-SRVSTFYRPGGSHPGGEGDIRAPRPPPDFKIFDHDEWNAWHYG 113
            DYY ++ ++R+AT ++IK AY   A +LHPDV GN+ +K  +FK+++EA ++LSD   R +YD++     R  T Y      P G+   RA  P       + D W A HYG
Sbjct:    2 DYYRVMNLTRNATQKDIKRAYLKLARQLHPDVNGNDLEKAALFKKVSEANSVLSDPAKRAEYDNRFSYRDRGETHYS-----PKGQTSARASAPRGSHYGINEDVWYAHHYG 108          
BLAST of EWM25569.1 vs. NCBI_GenBank
Match: gi|926256862|ref|WP_053595128.1| (J domain-containing protein [Lysinibacillus sp. FJAT-14222] >gi|925211533|gb|KOS61850.1| molecular chaperone DnaJ [Lysinibacillus sp. FJAT-14222])

HSP 1 Score: 75.8702 bits (185), Expect = 4.271e-14
Identity = 42/112 (37.50%), Postives = 67/112 (59.82%), Query Frame = 0
Query:    1 MKDYYVILQVSRSATLQEIKVAYKNFALKLHPDVTGNNEDKTRIFKQLTEAYNILSDQDARQKYDSKLGISRVSTFYRPGGSHPGGEGDIRAPRPPPDFKIFDHDEWNAWHY 112
            MK +Y  L VSR AT ++IK+AY+  + K HPDV+G N++  +IF ++TEAY +L DQ +R+ YD++L  +  S  +    +H       ++    PDF + D+ E N  H+
Sbjct:    1 MKTHYETLGVSRDATQEQIKLAYRKLSKKHHPDVSGGNKESEKIFLEVTEAYKVLKDQASREAYDARLDGAGQS--WNDRQTHEKQSSRQQSTEKKPDFNM-DNIEKNFEHF 109          
BLAST of EWM25569.1 vs. NCBI_GenBank
Match: gi|953501831|emb|CEG37280.1| (chaperone protein [Plasmopara halstedii])

HSP 1 Score: 77.0258 bits (188), Expect = 4.410e-14
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = 0
Query:    3 DYYVILQVSRSATLQEIKVAYKNFALKLHPDVTGNNEDKTRIFKQLTEAYNILSDQDARQKYDSKLGISRVSTFYRPGGS-----HP-GGEGDIRAPRPPPDFKIFDHDEWNAWHYGEG 115
            DYY +L V+R+A+ +EIK AY   A  LHPDVTGN+  K   F+ ++EA+++LS+   R++YD+    SR +  +R   +     HP    GD    R  P + I D + W A HYG+G
Sbjct:    5 DYYRVLNVARTASSKEIKAAYFQLAKSLHPDVTGNDVSKAERFRYVSEAHSVLSNPQKRREYDT----SRPANSFRSCDTSGMTQHPYATMGDGSDLRARPLYGI-DEEVWLAHHYGQG 118          
BLAST of EWM25569.1 vs. NCBI_GenBank
Match: gi|653639740|ref|WP_027642865.1| (hypothetical protein [[Clostridium] clostridioforme])

HSP 1 Score: 75.485 bits (184), Expect = 5.305e-14
Identity = 51/149 (34.23%), Postives = 74/149 (49.66%), Query Frame = 0
Query:    1 MKDYYVILQVSRSATLQEIKVAYKNFALKLHPDVTGNNEDKTRIFKQLTEAYNILSDQDARQKYDSKLGISRVSTFYRPGGSHPGGEGDIRAPRPPPDFKIFDHDEWNAWHYGEGEGVHKEPFVKRRNPFMDIRPDNKGAQFFVRQKTK 149
            MKDYY IL VS  A  ++IK AY+  A   HPDV  ++ DKT+   ++ EAY  L D+ +R++YD     +RV T  +    H    G     +P PD   F+   +  +  G+G   ++      R P   I+P+   A FF RQ  K
Sbjct:    1 MKDYYKILGVSEQAAEKDIKAAYRKLAKLYHPDVVKDDADKTQRMYEIQEAYQCLGDEASRKEYDK----ARVKTCSKDSNQHEQENG-----QPAPDMSQFER--FFGFQPGKGMETYQGNNNAARKPDGPIKPEEMFAAFFGRQNHK 138          
The following BLAST results are available for this feature:
BLAST of EWM25569.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107346|gb|EWM25569.1|2.172e-148100.00chaperone protein [Nannochloropsis gaditana][more]
gi|299470626|emb|CBN78567.1|4.547e-2839.87Heat shock protein 40 like protein/ DnaJ domain co... [more]
gi|567945817|gb|ETK71628.1|4.566e-1743.10hypothetical protein L915_21157 [Phytophthora para... [more]
gi|568003945|gb|ETL78282.1|5.462e-1743.10hypothetical protein L917_20889 [Phytophthora para... [more]
gi|301107426|ref|XP_002902795.1|1.721e-1640.52conserved hypothetical protein [Phytophthora infes... [more]
gi|669146370|ref|XP_008608747.1|8.921e-1538.39hypothetical protein SDRG_04838 [Saprolegnia dicli... [more]
gi|813163647|ref|XP_012202884.1|1.450e-1438.39hypothetical protein SPRG_08251 [Saprolegnia paras... [more]
gi|926256862|ref|WP_053595128.1|4.271e-1437.50J domain-containing protein [Lysinibacillus sp. FJ... [more]
gi|953501831|emb|CEG37280.1|4.410e-1439.50chaperone protein [Plasmopara halstedii][more]
gi|653639740|ref|WP_027642865.1|5.305e-1434.23hypothetical protein [[Clostridium] clostridioform... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5114rna5114Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications