rna5113, rna5113 (mRNA) Nannochloropsis gaditana

Overview
Namerna5113
Unique Namerna5113
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2867
Alignment locationCM002465.1:157792..158816 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100463g1.3051.mrna
Orig protein idgnl|cribi|Naga_100463g1.3051
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:157792..158816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100463g1gene4936Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5113rna5113-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25570.1cds5101Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5113 ID=rna5113|Name=rna5113|organism=Nannochloropsis gaditana|type=mRNA|length=2867bp
CATTTTTAGCTTAAGAAAGACGCGTTCAGACGTGTGGGATAGTGAACAAT
TTGTTAAAATATCCATCCTCCGCTCCCCATCATCCCACAGGCTTCATTAG
CATTTTCGCATGGCTAGCGAGGTCAATGCATACCTGGCCGGTCTGTCTGG
CGCTGAAACCTCTTGGTTTACCTTTCTGACAGCCTTCGCTAACCTCCCGC
CTTCGCAAAGGCCCTCGGACGTCCGCCTTCGGCTCCTGCATCGCGTGTAT
AAGGATTTAAGCAGCAAGACAAGTTGGGAAGACGTGAGAATCGTATGGCG
GGACATCTGCGATAGCGGTTCGTGGAAGCATACGCCTTTCTATGAAGGAG
GTGCATTTTTCGTTGAGGGGATTTTCACGCGTCGCCCTCGAGAGTCTCGA
GAAGCCGCCGTGGCGGAGGCCAAAAAGAAGCTAGTGAAAAAGAAGAAAGC
AAATTTCAAGAAAATGCTCAAGAAGAAGAAAGAAGAGAGGAAATTGAAGC
GTGAAAAGCGGATAGCTGAAGAAAAGATGAAACAAACGGAAGCACAATAT
GTAGAGAAAGGAGAAGACGAGGCAGGCGAGGTGAAGGAAGATATGGAGAA
AGAGGGAAACGCCGAGGAGCTGGGAGAAGATGAAATCCGAAAAATTTTGG
AAGAATGTGGGAACGAAGATGCCGCGGATGAGTGTGGAAGAATAGGAGGC
ATGAAACGCCCGAGGCCAACACAGGAGGAGGGGAAAGAAGCAAAGGCGGA
GATGGTGGAACAAGGGGGGAAAAAAAGAGTAGAAGTAGAAGATGATGATG
ATGATGAAGGAAACGGTACAGAAGAAGACCCACAAGAAAAGGAAGATGAG
GAGAAGGAGGATAAGGGAACGCGTCAGGAGGGGCTGACTGAAGAGAGGGG
TCTCAGCCGGCCGCGGAACGGGTCCGACGGCCAAGGGGAGACAGGCACTG
GACAAGAGGAAGTCGAAGAGGAGGTAGGGAGGGAGGACGGCCATGATAAG
GACGTACGTCGGGTGGAGGGACAGCGGGGAAGCGATGGGGAAGGATGGAC
GGCGATGGAGATGGAGGAAGGAGAAGAGGACGGGAAGGAGGAAGAGGTGC
CCGGTAGTAGTAGTAGGGACCACCCGGTCGAGCAGAAGCCGCACACGAGC
CTTTCCTTGGCCATGGTAGGCGTGACGCTAAGCCCGACAGGGTCAACAGA
CACGACGCGCGATCCGCTCGCCGCCGCTGGAGGAGGGGAGAATCTGCTGG
CCGCAGAGGGGGACGAAGCCTCGAGGGCAGGCGTCCCAAGAGGCGGCAGA
CCGACGGAAGTAGGGATAGACTCGTCATTCCCATCCACCCATGTGCCTGC
CAAGGGCAATGGAGCATTAACCCCAACGCCGGTCTGCGAAACTGCGGTCC
CAGCGACCCCACAAACGGCGTCTGCGACGGCCGCAGGACCCTCCCTGGCG
ATGACCTACCAGTCCTCCGCGAGCAGAGCGGACGCGTACTGTGATAGACC
TGCGGGAGCCATTCCAGCACCTGCTCAGGGCGCTCGCAGTCCTCTGTCCA
GTCAACCGGCAGAGCCTCCCACCTTCCCTCCCTCCCTCGCTCCCTCCCTC
CCTCCCTCCCTCCCGTCCTGCCCTCCACCCGAAGGCATCGGGGTTGACGG
GACAGGCCTCGCGACGGAGGCACAAACCGGGGCAGAACACACGGCGATAA
TGTCCCAGCTGAATGCAAGTCCTTCCTCACGAGACCCCTCATCCACGACC
CCAGCGTCCTCTCGCCCTTCACAGAGCGCTCAGAAGCGCGCCAAAAAGGC
GGGCACATCACTTCCTTCCTTTCCCCCTGCCCTCTCCCCTTCTTCCCCTG
CTCCCTCCATGACCCCACTCCTTCCCCCTGTGCCTGCGGCCGTTTTCCCC
CTGGCGTTCAATGAATCATTGGATGCGGGGAAATTGGTGGCTCTGGCGGC
GTACGCCGCCGGGCTTCGCGGCCGCAGCGGGGAAGGCGACGGGAGGGAAA
ACATCTCGGTTCCTCCTCTCTTGATTGCGTTGTGCAACGAGGTGGAGATT
ATTTATCAGGAAGTGCGTCTGGGTTTGGCAGAGCCAACGGACAAAGAGGC
CAAGCTACGCAAGAGTGTGCAGGCTGTAAGGAAATAACACGGGAAATACC
TGGCGGTCCCTATACGTATGTATGTATGCATGTATATATACATGTGTATA
TATATATATATCCTTGACCCTCTATAAATTTCTCTCTCTTTCACACTCTA
TATCTATGTATAACCGTGTTTTAAAGATGCTTCACGGTGCGAATGGGTGC
GCCCCAAGCGGTCCGGAGACCACCATAGGTGTTTTGTAAAATTCGCTGGA
AAACGCACGTTTATTTGGCATCTGATGATTTATCATGAACGTGACGGCGT
GGTGCTGGAAGGGGCCGTCCCCGGCGTTTTTGAAGATTGCCTCGCGCACG
AAGCACTGAGCCCGTTGTTTTGACGCGTGGCGAACTTGCGAGAGCGAGCG
CACGAAGCAAAGGCATGTGTTTTAATTAAAAGTGTCCTCCGGGCTCGCCA
AGAGAAAGTTTTTTGCACAATGGGATATTCATTCGCCCGTCTTCTCTTCT
CCTCCCCCGAACTCCTTCTCCTCGTCATCTGCTTCCTCCCCTCCCGCGTC
CCTCACCCGACACGCGACAAGAGCCAACACTGCTTCGGTTTCCACCAATA
CGTCTTCCCAGCATACTGGTTGCGAGAGACCTCCGCTCTTCCCTCCCATA
AGTTTCCGGGCGTGAATGCTCATGCTGCCGCCGCCGCGGTCCCAGAGGCT
GGCGGCGTACGAGCCGAGCATGTGTAAGCTTTCGCGCCATTTTCGAAGGC
GAGGTCGGCCTTGCACC
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protein sequence of rna5113

>rna5113-protein ID=rna5113-protein|Name=rna5113|organism=Nannochloropsis gaditana|type=polypeptide|length=252bp
MSTTRHIPTLRDENAYGAHTLHKGNVANVDRPLKPVGASSSVIGPSGLTG
GKIVARKALGSLSGSSLPSSHKTPGQEEDQTLIKQGLGNKVSKPRRALGE
ITNRVGPGHNSSGGGKDPYSMTSSSSSSSSSSSSSSSQKPTCRGKKGSTP
GLSSGGPPSLSSSLLADLPTFSDEEEAGEEPGEVELAAGRLGVEEERLVA
LKRAARERAEEEQFLSSIKEGGRGPVDFGREDEEDAAFEREMQKLLLADM
QG
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mRNA from alignment at CM002465.1:157792..158816-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5113 ID=rna5113|Name=rna5113|organism=Nannochloropsis gaditana|type=mRNA|length=1025bp|location=Sequence derived from alignment at CM002465.1:157792..158816- (Nannochloropsis gaditana)
CACCATGGCGGGATTGTGGGCAGCATGGGTGCGCATACTGTTTGACACAT
TCTTTCGTTCCCCCCATCATCCAGGATCTTTCTCAGACCAATGTCAACCA
CGCGCCACATTCCAACCCTCCGCGATGAGAACGCGTACGGTGCTCACACC
TTGCACAAAGGGAATGTCGCGAATGTCGACCGTCCCCTGAAACCAGTGGG
GGCTTCTTCCTCTGTGATCGGCCCTTCCGGTTTGACTGGGGGAAAGATAG
TGGCTCGCAAGGCTCTGGGATCTCTATCTGGCTCGTCGCTTCCCTCCTCA
CACAAGACTCCCGGGCAAGAGGAGGACCAAACACTGATCAAACAAGGCCT
GGGAAACAAAGTGTAGGTCTCAACGATGCTGCGGGCGTATCCTCAGGGGC
CAGGCTGGCGAAGAGAGGGAATGCTCATGCGTGGAATGGACGCATTCCAG
ACAATGCCTGCGCCCTTCCTTCTGACGCTCACCGAACCCCTCAACTTCCC
TCACTTCCCCCCCTTCCCATCTTCTTGGGCCGTGTCATGCAGCTCTAAGC
CCCGACGGGCATTGGGAGAGATCACCAACAGGGTGGGACCAGGCCATAAC
AGCAGCGGCGGCGGCAAAGACCCGTACTCCATGACCTCCTCCTCCTCCTC
CTCTTCCTCCTCCTCCTCCTCCTCTTCCTCGCAGAAGCCAACCTGTCGAG
GGAAGAAGGGATCGACCCCGGGGCTTTCCTCTGGTGGCCCTCCCTCCCTC
TCGTCCTCCCTGCTTGCCGACCTACCGACCTTCTCGGATGAGGAGGAGGC
AGGGGAGGAGCCAGGGGAAGTGGAGCTGGCAGCAGGCAGGCTCGGGGTCG
AGGAGGAGAGACTAGTGGCCTTGAAAAGGGCCGCCAGGGAGAGGGCGGAG
GAGGAACAATTTCTGTCTTCCATCAAGGAAGGGGGCCGGGGCCCTGTGGA
CTTCGGGAGGGAGGACGAGGAAGATGCGGCTTTCGAGAGGGAAATGCAAA
AATTGCTGCTCGCGGACATGCAAGG
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Coding sequence (CDS) from alignment at CM002465.1:157792..158816-

>rna5113 ID=rna5113|Name=rna5113|organism=Nannochloropsis gaditana|type=CDS|length=1510bp|location=Sequence derived from alignment at CM002465.1:157792..158816- (Nannochloropsis gaditana)
CTCTAAGCCCCGACGGGCATTGGGAGAGATCACCAACAGGGTGGGACCAG
GCCATAACAGCAGCGGCGGCGGCAAAGACCCGTACTCCATGACCTCCTCC
TCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCTTCCTCGCAGAAGCCAAC
CTGTCGAGGGAAGAAGGGATCGACCCCGGGGCTTTCCTCTGGTGGCCCTC
CCTCCCTCTCGTCCTCCCTGCTTGCCGACCTACCGACCTTCTCGGATGAG
GAGGAGGCAGGGGAGGAGCCAGGGGAAGTGGAGCTGGCAGCAGGCAGGCT
CGGGGTCGAGGAGGAGAGACTAGTGGCCTTGAAAAGGGCCGCCAGGGAGA
GGGCGGAGGAGGAACAATTTCTGTCTTCCATCAAGGAAGGGGGCCGGGGC
CCTGTGGACTTCGGGAGGGAGGACGAGGAAGATGCGGCTTTCGAGAGGGA
AATGCAAAAATTGCTGCTCGCGGACATGCAAGGATGTCAACCACGCGCCA
CATTCCAACCCTCCGCGATGAGAACGCGTACGGTGCTCACACCTTGCACA
AAGGGAATGTCGCGAATGTCGACCGTCCCCTGAAACCAGTGGGGGCTTCT
TCCTCTGTGATCGGCCCTTCCGGTTTGACTGGGGGAAAGATAGTGGCTCG
CAAGGCTCTGGGATCTCTATCTGGCTCGTCGCTTCCCTCCTCACACAAGA
CTCCCGGGCAAGAGGAGGACCAAACACTGATCAAACAAGGCCTGGGAAAC
AAAGTCTCTAAGCCCCGACGGGCATTGGGAGAGATCACCAACAGGGTGGG
ACCAGGCCATAACAGCAGCGGCGGCGGCAAAGACCCGTACTCCATGACCT
CCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCTTCCTCGCAGAAG
CCAACCTGTCGAGGGAAGAAGGGATCGACCCCGGGGCTTTCCTCTGGTGG
CCCTCCCTCCCTCTCGTCCTCCCTGCTTGCCGACCTACCGACCTTCTCGG
ATGAGGAGGAGGCAGGGGAGGAGCCAGGGGAAGTGGAGCTGGCAGCAGGC
AGGCTCGGGGTCGAGGAGGAGAGACTAGTGGCCTTGAAAAGGGCCGCCAG
GGAGAGGGCGGAGGAGGAACAATTTCTGTCTTCCATCAAGGAAGGGGGCC
GGGGCCCTGTGGACTTCGGGAGGGAGGACGAGGAAGATGCGGCTTTCGAG
AGGGAAATGCAAAAATTGCTGCTCGCGGACATGCAAGGATGTCAACCACG
CGCCACATTCCAACCCTCCGCGATGAGAACGCGTACGGTGCTCACACCTT
GCACAAAGGGAATGTCGCGAATGTCGACCGTCCCCTGAAACCAGTGGGGG
CTTCTTCCTCTGTGATCGGCCCTTCCGGTTTGACTGGGGGAAAGATAGTG
GCTCGCAAGGCTCTGGGATCTCTATCTGGCTCGTCGCTTCCCTCCTCACA
CAAGACTCCCGGGCAAGAGGAGGACCAAACACTGATCAAACAAGGCCTGG
GAAACAAAGT
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Synonyms
Publications