rna511, rna511 (mRNA) Nannochloropsis gaditana

Overview
Namerna511
Unique Namerna511
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length702
Alignment locationCM002455.1:1280425..1281729 +

Link to JBrowse

Properties
Property NameValue
Productisobutyryl- mitochondrial
Orig transcript idgnl|cribi|Naga_100096g20.981.mrna
Orig protein idgnl|cribi|Naga_100096g20.981
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1280425..1281729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100096g20gene492Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna511rna511-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30173.1cds511Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna511 ID=rna511|Name=rna511|organism=Nannochloropsis gaditana|type=mRNA|length=702bp
ATGGCTGACGATGAACAGAAGAAGAAAAAAATCCCCACGGGAGCATTGAA
CGTGGAGCGTCGGACCTGGGACCTCGAGCATTTTGAGAAGATAGCCAAGG
AACGCCTGGAGAAGGAAGCATCAGGAGATGTTGAGAAGAAGAAGCCGGGA
TTTGTGAGGAAACGAGAAGAGTTTCAAGCGGCGGAGGCAGGCGCGGCAGG
GCCTGAGGGCTCGAAGAGGGCTTACCTAAAGCATCGAGAAGCCGACCTGG
GCCTGGAGGAAAAAGTGGGGAAAATCCAAGTTGTCACGGGAAGCTCAGCC
CCCCACCAACAAGGCGGCTACTGGTGTGACATTTGTCAATGTTTGCTCAA
AGACTCGATGGCTTACTTGGACCACATCAACGGGAAGAAGCATCAGAAAG
CCCTGGGTTACAGCATGCGGGTGGAGAGGGTGGGGGTGGACCGTGTGAAA
GAGCGTCTGAATGCCTTGAAACGACGAGAAGATGAGAAGAAGAAGGCGGG
CCCTCGTGAAAGTGCCATTGATGCGTACCAAAAAAAGCTGGAGAAAGATG
AAGCAATTAAAGCACAGTGGAAAGAGGCAAGGAAAGAAGCCCGAATTAAT
GTTATTCAGCGGGCAACAAAAGAGGAGGAAAGTACGGTTGAGGAAGAAGG
TGGTGTAGATCCTGAAATGGCGGCATTGATGGGTTTTGGAGGTTTTAAGT
GA
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protein sequence of rna511

>rna511-protein ID=rna511-protein|Name=rna511|organism=Nannochloropsis gaditana|type=polypeptide|length=434bp
MATFLRFPRRFITSPSITKFIAGTKRNRVPYVCIPTLSSIQSSHLATLPD
IAAPTLGLDETQCEYFNLAHSFAKNELTPDNAAKWDSKEIFPVETMRKAA
QLGFGAVFVREDVGGSGMSRLEGSVIFEALAAGCTSTAAYMTIHSMCGWM
LDSFGTEAQRQRWLPRMATMDLLSSYCLTEPNSGSDAVSLSTKAVREGDS
YVLNGSKAFISGAGVSDVYLVMCRTGEKGPRGISCILVEKGTEGLSFGAP
EKKLGWKSQPTATVTFTDCRVPASNLIGVEGEGFKYAMKGLDGGRINIAT
CSVGAAQACVEKTRAYIMERRQFGKAIGENQYVQFKFAEMVTSVVGARLM
VRQAARLLDAKDSQATVACAMAKKVATDSAFTVINDALQMHGGYGYLKDY
HVERYLRDVRVHQILEGTNEIMQIIIARKLLQQD
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mRNA from alignment at CM002455.1:1280425..1281729+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna511 ID=rna511|Name=rna511|organism=Nannochloropsis gaditana|type=mRNA|length=1305bp|location=Sequence derived from alignment at CM002455.1:1280425..1281729+ (Nannochloropsis gaditana)
ATGGCAACTTTCCTTCGATTTCCTCGTCGCTTTATCACCAGTCCCTCCAT
TACAAAATTTATTGCTGGTACAAAGAGAAACAGGGTGCCATATGTGTGCA
TTCCCacgctctcttccatccAGAGTTCCCATTTGGCCACCCTTCCTGAC
ATCGCCGCACCTACCCTCGGACTCGACGAGACCCAGTGCGAATATTTCAA
CCTCGCTCATTCCTTCGCAAAAAACGAGTTGACACCCGACAACGCCGCCA
AGTGGGACAGTAAAGAGATATTCCCCGTAGAGACAATGCGAAAAGCAGCC
CAGCTGGGTTTCGGTGCCGTCTTCGTGCGAGAAGATGTTGGGGGCAGTGG
CATGTCGCGGTTGGAGGGATCCGTCATCTTTGAGGCGTTGGCCGCTGGAT
GCACGAGCACGGCTGCTTATATGACCATTCACTCCATGTGTGGATGGATG
TTGGACTCTTTTGGCACCGAGGCGCAGCGTCAAAGATGGCTCCCCCGGAT
GGCCACCATggacctcctctcttcctatTGCTTGACCGAGCCCAACAGTG
GGAGTGACGCAGTCTCTCTTTCAACCAAGGCcgtgcgggaaggagactCG
TACGTGCTGAACGGAAGCAAAGCTTTTATCAGCGGTGCGGGTGTCAGCGA
CGTGTACCTGGTCATGTGTCGAACGGGTGAGAAGGGCCCTCGGGGGATAT
CCTGCATtttggtggagaaggggacggAAGGCCTGTCATTTGGGGCCCCT
GAAAAGAAGCTGGGCTGGAAATCACAGCCAACAGCCACGGTGACATTCAC
AGACTGTCGGGTGCCGGCTTCGAATCTGATaggcgtggaaggggaagggt
tcAAGTACGCGATGAAGGGCTTGGACGGTGGACGTATCAACATTGCCACG
TGCAGTGTGGGTGCCGCACAGGCATGTGTGGAAAAGACCCGGGCGTACAT
CATGGAGAGGCGACAGTTTGGGAAGGCGATAGGGGAGAACCAGTACGTGC
AGTTCAAATTCGCGGAAATGGTGACCTCCGTGGTCGGGGCCCGGCTGATG
GTACGACAGGCTGCCAGATTGCTGGACGCAAAGGATTCTCAAGCAACGGT
GGCGTGCGCAATGGCGAAGAAGGTGGCAACGGACTCGGCATTCACCGTAA
TCAACGACGCGCTGCAGATGCATGGGGGATACGGGTACCTCAAGGATTAC
CATGTGGAGCGGTACTTGAGGGATGTGAGGGTGCATCAAATTTTGGAAGG
GACGAACGAGATCATGCAGATAATTATAGCGAGGAAGCTGTTACAGCAAG
ATTAG
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Coding sequence (CDS) from alignment at CM002455.1:1280425..1281729+

>rna511 ID=rna511|Name=rna511|organism=Nannochloropsis gaditana|type=CDS|length=1305bp|location=Sequence derived from alignment at CM002455.1:1280425..1281729+ (Nannochloropsis gaditana)
ATGGCAACTTTCCTTCGATTTCCTCGTCGCTTTATCACCAGTCCCTCCAT
TACAAAATTTATTGCTGGTACAAAGAGAAACAGGGTGCCATATGTGTGCA
TTCCCacgctctcttccatccAGAGTTCCCATTTGGCCACCCTTCCTGAC
ATCGCCGCACCTACCCTCGGACTCGACGAGACCCAGTGCGAATATTTCAA
CCTCGCTCATTCCTTCGCAAAAAACGAGTTGACACCCGACAACGCCGCCA
AGTGGGACAGTAAAGAGATATTCCCCGTAGAGACAATGCGAAAAGCAGCC
CAGCTGGGTTTCGGTGCCGTCTTCGTGCGAGAAGATGTTGGGGGCAGTGG
CATGTCGCGGTTGGAGGGATCCGTCATCTTTGAGGCGTTGGCCGCTGGAT
GCACGAGCACGGCTGCTTATATGACCATTCACTCCATGTGTGGATGGATG
TTGGACTCTTTTGGCACCGAGGCGCAGCGTCAAAGATGGCTCCCCCGGAT
GGCCACCATggacctcctctcttcctatTGCTTGACCGAGCCCAACAGTG
GGAGTGACGCAGTCTCTCTTTCAACCAAGGCcgtgcgggaaggagactCG
TACGTGCTGAACGGAAGCAAAGCTTTTATCAGCGGTGCGGGTGTCAGCGA
CGTGTACCTGGTCATGTGTCGAACGGGTGAGAAGGGCCCTCGGGGGATAT
CCTGCATtttggtggagaaggggacggAAGGCCTGTCATTTGGGGCCCCT
GAAAAGAAGCTGGGCTGGAAATCACAGCCAACAGCCACGGTGACATTCAC
AGACTGTCGGGTGCCGGCTTCGAATCTGATaggcgtggaaggggaagggt
tcAAGTACGCGATGAAGGGCTTGGACGGTGGACGTATCAACATTGCCACG
TGCAGTGTGGGTGCCGCACAGGCATGTGTGGAAAAGACCCGGGCGTACAT
CATGGAGAGGCGACAGTTTGGGAAGGCGATAGGGGAGAACCAGTACGTGC
AGTTCAAATTCGCGGAAATGGTGACCTCCGTGGTCGGGGCCCGGCTGATG
GTACGACAGGCTGCCAGATTGCTGGACGCAAAGGATTCTCAAGCAACGGT
GGCGTGCGCAATGGCGAAGAAGGTGGCAACGGACTCGGCATTCACCGTAA
TCAACGACGCGCTGCAGATGCATGGGGGATACGGGTACCTCAAGGATTAC
CATGTGGAGCGGTACTTGAGGGATGTGAGGGTGCATCAAATTTTGGAAGG
GACGAACGAGATCATGCAGATAATTATAGCGAGGAAGCTGTTACAGCAAG
ATTAG
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Synonyms
Publications