rna5105, rna5105 (mRNA) Nannochloropsis gaditana

Overview
Namerna5105
Unique Namerna5105
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length852
Alignment locationCM002465.1:136010..137311 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101188g2.6427.mrna
Orig protein idgnl|cribi|Naga_101188g2.6427
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:136010..137311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101188g2gene4929Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5105rna5105-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25579.1cds5093Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5105 ID=rna5105|Name=rna5105|organism=Nannochloropsis gaditana|type=mRNA|length=852bp
ATACAGTTTCGAAAAGTATGGTATCAGGAGCGTCGAAAAAGAAAAAGAAA
AAGGTAGCAGCAGCCCTTTCCCTTGCTGGCCCGACCTCCTCCCTCCTTAA
AGCCGTGTACACACGCCTAGCCAACACACTGCACGCTCGGTTTGGCCTTG
TATTAGTACAAAACGAGGAAAAAGGGCGCTACTGTTGCGCTCCTCCGCAG
GGTTTTGAGCCCGGTCGAGTGCTTTTGGAGGAAGAAGCTTACATATGGGG
CAACGGGCACGCGGAGTGGTGTTTGGAGTGCGACACTCCCAGTCATGCGA
GCCCGGCCTGCCCTCGGATCCGTGCGAGCTATCCTCCTTCCATTGTTCCT
TTGCTGCCCGCAATCGAAAATTGGATGATGAAGGACCTAGAGCGGGTACA
GAGCTTGGACCGGGCCAGGGCGTGGATCAAGGCACTGATCCGCCTCCGTG
CGGAAACGAAGGAGGGAATGGCAACGGAAAAGGAGAAAGAGAAAGAGGGC
AGTGGATGGCTGGATCCACTTTGGGCGTTGACAGCTTGCAACCTCGAGCA
GTGTCTGCAGGACGCGAGAAAATTGGCTCACAAGTGAGGGAGGGAGGGAG
GGAGGGAGGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGGGACGCCGGCTCGACGGCTGTCGTTGGGAGGAACCGGGACA
GGAAGGGAGGGAGAATGGGGCTCCCGCCTCTCCCTCGTTTCCTCCGACGT
GGGCGGTCTGGAGTCCCTCGAGGACCTGAGGCAAAAGCACGAGGAGCTGC
AGCAACGGTAAGCCCCTCTTTCCCTCCCTCCCCCGCTTCCTCCGCCTCTC
CC
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protein sequence of rna5105

>rna5105-protein ID=rna5105-protein|Name=rna5105|organism=Nannochloropsis gaditana|type=polypeptide|length=111bp
MGRLCGQTRGGHRDAGFPSQRCQGHARFSPGSGSSPTLCLHHQRGQERRR
CWEDRHRSCQGGKRGAAPGGNVVVWGQGLERRRKKGAGVYMSGCIPTAKN
QALFEEHPTKR
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mRNA from alignment at CM002465.1:136010..137311-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5105 ID=rna5105|Name=rna5105|organism=Nannochloropsis gaditana|type=mRNA|length=1302bp|location=Sequence derived from alignment at CM002465.1:136010..137311- (Nannochloropsis gaditana)
CCGGCAGTCCCGGCTGTGTTCGAGGCCGTGGGGGGGGGCTTCGTCGACGG
GCTCTGCAGCGACCGACGGATCCTGCCCAACGTCGATGGCTTTGCCGGTG
AGAAGGGCCGGGACGAAGGAACAGGGTGGGAAGTGCCTGGATCACAGACG
TTGACAGGGGGATCGTATTGGTATTCTATACGTTCTCTCGAGGCGACTGA
TCCACCGCCCTCCCCCCCTTCCTCTCCCGCCCCCCCCCCCCCCCCGTACC
CTCCTTCCCCAGAATACAAGGCTCCCAAGGACGGGCTGGACGTGATGATA
TGGGCCGGCTTTGCGGCCAAACACGGGGCGGTCACCGTGACGCAGGGTTT
CCTTCTCAAAGGTAAGCAGGAGAGCGGGGGGGAAGGAAAGGGGAGGGAAA
GTGTGGGGTGTTAAGACTGGGGGGCAGCGAAGGAATGATGGATTTGGATG
GTGTCATGGATGGTGGGAGGCCTCTGTGGGGCTCAAGATCTCTGGCCGTC
CTTTCTCTCTCCCTGGCTTTACCGACTCAACCTGCCCGCCTGTCCTCCCT
CCCTCTCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCAGGTGCC
AAGGGCACGCGCGCTTTTCCCCCGGGAGTGGTTCCTCCCCCACCCTCTGC
CTCCACCACCAACGTGGCCAAGAAAGGAGGCGCTGCTGGGAAGACCGGCA
CAGATCCTGCCAAGGAGGAAAACGAGGGGCGGCTCCGGGGGGGAATGTAG
TCGTATGGGGGCAGGGATTAGAGAGAAGAAGGAAGAAGGGGGCGGGAGTG
TACATGTCAGGCTGTATACCGACGGCGAAGAATCAAGCACTGTTCGAAGA
ACATCCAACAAAGAGGTGACTCGCGATCAAAGTATAAGAAAAGCTTGAGG
GTAGCACGGAATGGGTTGATGAATTGGGAGGGTCTACGAGGCAGGTTACA
CAAAAAAAGAGACGGGACACAATGGAGAAATCCGAAAAGAATATTAGGTA
ATGTGCATGGTAAAAAAGAATAGATGCATCGTGGAACGAAGGATTCGACG
GCTGCTACCGAGGATCAAGGCCGTTTGAAACGGATAGCACGGATGGTTCA
GACCAGCACTGTATGATTTCATCATGATCGGTCAGATCGAAAAAAGACTG
CAACAAACAAGATAGATGTTATCACTTTCGTTCTTTGTGCGCCTCAAGTG
TCATCTGCAATCTTCTGCCTTAGGTGATAGCTCAAGGCGGTACTGCGATG
ACGACAAATATCTGCAGCAGTTACCCCTTGCTTAACTTGATTAGCAATGC
TG
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Coding sequence (CDS) from alignment at CM002465.1:136010..137311-

>rna5105 ID=rna5105|Name=rna5105|organism=Nannochloropsis gaditana|type=CDS|length=672bp|location=Sequence derived from alignment at CM002465.1:136010..137311- (Nannochloropsis gaditana)
GTGCCAAGGGCACGCGCGCTTTTCCCCCGGGAGTGGTTCCTCCCCCACCC
TCTGCCTCCACCACCAACGTGGCCAAGAAAGGAGGCGCTGCTGGGAAGAC
CGGCACAGATCCTGCCAAGGAGGAAAACGAGGGGCGGCTCCGGGGGGGAA
TGTAGTCGTATGGGGGCAGGGATTAGAGAGAAGAAGGAAGAAGGGGGCGG
GAGTGTACATGTCAGGCTGTATACCGACGGCGAAGAATCAAGCACTGTTC
GAAGAACATCCAACAAAGAGGTGAATGGGCCGGCTTTGCGGCCAAACACG
GGGCGGTCACCGTGACGCAGGGTTTCCTTCTCAAAGGTGCCAAGGGCACG
CGCGCTTTTCCCCCGGGAGTGGTTCCTCCCCCACCCTCTGCCTCCACCAC
CAACGTGGCCAAGAAAGGAGGCGCTGCTGGGAAGACCGGCACAGATCCTG
CCAAGGAGGAAAACGAGGGGCGGCTCCGGGGGGGAATGTAGTCGTATGGG
GGCAGGGATTAGAGAGAAGAAGGAAGAAGGGGGCGGGAGTGTACATGTCA
GGCTGTATACCGACGGCGAAGAATCAAGCACTGTTCGAAGAACATCCAAC
AAAGAGGTGAATGGGCCGGCTTTGCGGCCAAACACGGGGCGGTCACCGTG
ACGCAGGGTTTCCTTCTCAAAG
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Synonyms
Publications