rna5104, rna5104 (mRNA) Nannochloropsis gaditana

Overview
Namerna5104
Unique Namerna5104
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length267
Alignment locationCM002465.1:134203..135421 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101188g1.6429.mrna
Orig protein idgnl|cribi|Naga_101188g1.6429
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:134203..135421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101188g1gene4928Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5104rna5104-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25581.1cds5092Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5104 ID=rna5104|Name=rna5104|organism=Nannochloropsis gaditana|type=mRNA|length=267bp
ATGACAACCAATAGATACATAGAGGGGAGCGGTCGGAGGGGCAACGAGGA
GGAAAGACATCAGCGGAGGGCCCGGCAGGCGAGAGAAACGTCCCGTCAAT
CCTTGTCGTCAAGAAGACGCGCCAACATGTGGACCCTCGTTAGGAAGAAA
TGTGCGTCAAAATACCCGTCTGTTCAGGCATCCTCATGCGACGAACTCGA
CCAATTGCAGCATCCTTTCCCCACGCCTTCCTTTTCTATTTCTACCCCCC
CCCGACTTACTCCCTAG
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protein sequence of rna5104

>rna5104-protein ID=rna5104-protein|Name=rna5104|organism=Nannochloropsis gaditana|type=polypeptide|length=189bp
MVSGASKKKKKKVAAALSLAGPTSSLLKAVYTRLANTLHARFGLVLVQNE
EKGRYCCAPPQGFEPGRVLLEEEAYIWGNGHAEWCLECDTPSHASPACPR
IRASYPPSIVPLLPAIENWMMKDLERVQSLDRARAWIKALIRLRAETKEG
MATEKEKEKEGSGWLDPLWALTACNLEQCLQDARKLAHK
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mRNA from alignment at CM002465.1:134203..135421-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5104 ID=rna5104|Name=rna5104|organism=Nannochloropsis gaditana|type=mRNA|length=1219bp|location=Sequence derived from alignment at CM002465.1:134203..135421- (Nannochloropsis gaditana)
ATACAGTTTCGAAAAGTATGGTATCAGGAGCGTCGAAAAAGAAAAAGAAA
AAGGTAGCAGCAGCCCTTTCCCTTGCTGGCCCGACCTCCTCCCTCCTTAA
AGCCGTGTACACACGCCTAGCCAACACACTGCACGCTCGGTTTGGCCTTG
TATTAGTACAAAACGAGGAAAAAGGGCGCTACTGTTGCGCTCCTCCGCAG
GGTTTTGAGCCCGGTCGAGTGCTTTTGGAGGAAGAAGCTTACATGTAAGT
GCTGACCGTCTCCGCAGAGTACCTTTATGGTCGATGGAACGAGCGAACAA
GACGCTCCCATTTACGGTCCTATGCTTGTGTATACACAAAAATTTGGGAC
CGAACAGAGTGTCCACATTTTTCACATGCACAGATGGGGCAACGGGCACG
CGGAGTGGTGTTTGGAGTGCGACACTCCCAGTCATGCGAGCCCGGCCTGC
CCTCGGATCCGTGCGAGCTATCCTCCTTCCATTGTTCCTTTGCTGCCCGC
AATCGAAAATTGGATGATGAAGGACCTAGAGCGGGTACAGAGCTTGGACC
GGGCCAGGGCGTGGATCAAGGTAATGGAGAAGGATTGGAAGAAAAGGAGG
GAGCGAGGGAGGGGGGCAGGGAGGGATGGAAGGAAAGTGAAGGCGGAGGA
GGAGAATAGGAGACGTGCATGGAGGTGCCTGGGTTCAGAGAAGTGCGTCA
AACAGCGTCCCATGGGAGGCCATGGGGGGCAGTGAAAATGGCGCGAAACA
GGAACCTTGATGTAAGGCCCTCTCACCCACCAACACGACGCGACTCAGGC
ACTGATCCGCCTCCGTGCGGAAACGAAGGAGGGAATGGCAACGGAAAAGG
AGAAAGAGAAAGAGGGCAGTGGATGGCTGGATCCACTTTGGGCGTTGACA
GCTTGCAACCTCGAGCAGTGTCTGCAGGACGCGAGAAAATTGGCTCACAA
GTGAGGGAGGGAGGGAGGGAGGGAGGAGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGGGACGCCGGCTCGACGGCTGTCGT
TGGGAGGAACCGGGACAGGAAGGGAGGGAGAATGGGGCTCCCGCCTCTCC
CTCGTTTCCTCCGACGTGGGCGGTCTGGAGTCCCTCGAGGACCTGAGGCA
AAAGCACGAGGAGCTGCAGCAACGGTAAGCCCCTCTTTCCCTCCCTCCCC
CGCTTCCTCCGCCTCTCCC
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Coding sequence (CDS) from alignment at CM002465.1:134203..135421-

>rna5104 ID=rna5104|Name=rna5104|organism=Nannochloropsis gaditana|type=CDS|length=1710bp|location=Sequence derived from alignment at CM002465.1:134203..135421- (Nannochloropsis gaditana)
GCACTGATCCGCCTCCGTGCGGAAACGAAGGAGGGAATGGCAACGGAAAA
GGAGAAAGAGAAAGAGGGCAGTGGATGGCTGGATCCACTTTGGGCGTTGA
CAGCTTGCAACCTCGAGCAGTGTCTGCAGGACGCGAGAAAATTGGCTCAC
AAGTGAATGGGGCAACGGGCACGCGGAGTGGTGTTTGGAGTGCGACACTC
CCAGTCATGCGAGCCCGGCCTGCCCTCGGATCCGTGCGAGCTATCCTCCT
TCCATTGTTCCTTTGCTGCCCGCAATCGAAAATTGGATGATGAAGGACCT
AGAGCGGGTACAGAGCTTGGACCGGGCCAGGGCGTGGATCAAGATGGTAT
CAGGAGCGTCGAAAAAGAAAAAGAAAAAGGTAGCAGCAGCCCTTTCCCTT
GCTGGCCCGACCTCCTCCCTCCTTAAAGCCGTGTACACACGCCTAGCCAA
CACACTGCACGCTCGGTTTGGCCTTGTATTAGTACAAAACGAGGAAAAAG
GGCGCTACTGTTGCGCTCCTCCGCAGGGTTTTGAGCCCGGTCGAGTGCTT
TTGGAGGAAGAAGCTTACATGCACTGATCCGCCTCCGTGCGGAAACGAAG
GAGGGAATGGCAACGGAAAAGGAGAAAGAGAAAGAGGGCAGTGGATGGCT
GGATCCACTTTGGGCGTTGACAGCTTGCAACCTCGAGCAGTGTCTGCAGG
ACGCGAGAAAATTGGCTCACAAGTGAATGGGGCAACGGGCACGCGGAGTG
GTGTTTGGAGTGCGACACTCCCAGTCATGCGAGCCCGGCCTGCCCTCGGA
TCCGTGCGAGCTATCCTCCTTCCATTGTTCCTTTGCTGCCCGCAATCGAA
AATTGGATGATGAAGGACCTAGAGCGGGTACAGAGCTTGGACCGGGCCAG
GGCGTGGATCAAGATGGTATCAGGAGCGTCGAAAAAGAAAAAGAAAAAGG
TAGCAGCAGCCCTTTCCCTTGCTGGCCCGACCTCCTCCCTCCTTAAAGCC
GTGTACACACGCCTAGCCAACACACTGCACGCTCGGTTTGGCCTTGTATT
AGTACAAAACGAGGAAAAAGGGCGCTACTGTTGCGCTCCTCCGCAGGGTT
TTGAGCCCGGTCGAGTGCTTTTGGAGGAAGAAGCTTACATGCACTGATCC
GCCTCCGTGCGGAAACGAAGGAGGGAATGGCAACGGAAAAGGAGAAAGAG
AAAGAGGGCAGTGGATGGCTGGATCCACTTTGGGCGTTGACAGCTTGCAA
CCTCGAGCAGTGTCTGCAGGACGCGAGAAAATTGGCTCACAAGTGAATGG
GGCAACGGGCACGCGGAGTGGTGTTTGGAGTGCGACACTCCCAGTCATGC
GAGCCCGGCCTGCCCTCGGATCCGTGCGAGCTATCCTCCTTCCATTGTTC
CTTTGCTGCCCGCAATCGAAAATTGGATGATGAAGGACCTAGAGCGGGTA
CAGAGCTTGGACCGGGCCAGGGCGTGGATCAAGATGGTATCAGGAGCGTC
GAAAAAGAAAAAGAAAAAGGTAGCAGCAGCCCTTTCCCTTGCTGGCCCGA
CCTCCTCCCTCCTTAAAGCCGTGTACACACGCCTAGCCAACACACTGCAC
GCTCGGTTTGGCCTTGTATTAGTACAAAACGAGGAAAAAGGGCGCTACTG
TTGCGCTCCTCCGCAGGGTTTTGAGCCCGGTCGAGTGCTTTTGGAGGAAG
AAGCTTACAT
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Synonyms
Publications