EWM25581.1, cds5092 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM25581.1 vs. NCBI_GenBank
Match: gi|585107365|gb|EWM25581.1| (hypothetical protein Naga_101188g1 [Nannochloropsis gaditana]) HSP 1 Score: 386.341 bits (991), Expect = 8.397e-136 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query: 1 MVSGASKKKKKKVAAALSLAGPTSSLLKAVYTRLANTLHARFGLVLVQNEEKGRYCCAPPQGFEPGRVLLEEEAYIWGNGHAEWCLECDTPSHASPACPRIRASYPPSIVPLLPAIENWMMKDLERVQSLDRARAWIKALIRLRAETKEGMATEKEKEKEGSGWLDPLWALTACNLEQCLQDARKLAHK 189
MVSGASKKKKKKVAAALSLAGPTSSLLKAVYTRLANTLHARFGLVLVQNEEKGRYCCAPPQGFEPGRVLLEEEAYIWGNGHAEWCLECDTPSHASPACPRIRASYPPSIVPLLPAIENWMMKDLERVQSLDRARAWIKALIRLRAETKEGMATEKEKEKEGSGWLDPLWALTACNLEQCLQDARKLAHK
Sbjct: 1 MVSGASKKKKKKVAAALSLAGPTSSLLKAVYTRLANTLHARFGLVLVQNEEKGRYCCAPPQGFEPGRVLLEEEAYIWGNGHAEWCLECDTPSHASPACPRIRASYPPSIVPLLPAIENWMMKDLERVQSLDRARAWIKALIRLRAETKEGMATEKEKEKEGSGWLDPLWALTACNLEQCLQDARKLAHK 189
BLAST of EWM25581.1 vs. NCBI_GenBank
Match: gi|553179160|ref|XP_005852658.1| (hypothetical protein NGA_0683900, partial [Nannochloropsis gaditana CCMP526] >gi|422295874|gb|EKU23173.1| hypothetical protein NGA_0683900, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 201.83 bits (512), Expect = 1.536e-63 Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0
Query: 45 VLVQNEEKGRYCCAPPQGFEPGRVLLEEEAYIWGNGHAEWCLECDTPSHASPACPRIRASYPPSIVPLLPAIENWMMKDLERVQSLDRARAWIK 138
+LVQNEEKGRYCCAPPQGFEPGRVLLEEEAYIWGNGHAEWCLECDTPSHASPACPRIRASYPPSIVPLLPAIENWMMKDLERVQSLDRARAWIK
Sbjct: 1 MLVQNEEKGRYCCAPPQGFEPGRVLLEEEAYIWGNGHAEWCLECDTPSHASPACPRIRASYPPSIVPLLPAIENWMMKDLERVQSLDRARAWIK 94
BLAST of EWM25581.1 vs. NCBI_GenBank
Match: gi|551659499|ref|XP_005832518.1| (hypothetical protein GUITHDRAFT_138770 [Guillardia theta CCMP2712] >gi|428176655|gb|EKX45538.1| hypothetical protein GUITHDRAFT_138770 [Guillardia theta CCMP2712]) HSP 1 Score: 61.2326 bits (147), Expect = 1.058e-7 Identity = 34/89 (38.20%), Postives = 51/89 (57.30%), Query Frame = 0
Query: 52 KGRYCCAPPQGFEPGRVLLEEEAYIWGNGHAEWCLECDTPSHASPACPRIRASYPPSIVPLLPAIENWMMKDLERVQSLDRARAWIKAL 140
KGR A + E G ++LEEE + + HA C+EC P H S C R++ YPP++ + IE + ++ LE ++ LD AR +IK L
Sbjct: 129 KGRIMVAA-RDIEAGEIILEEEPLVAASWHAHRCIECHEP-HRSSECSRVQHKYPPAVAANMEEIERF-LEGLESIEELDSARRFIKLL 214
BLAST of EWM25581.1 vs. NCBI_GenBank
Match: gi|299116928|emb|CBN75038.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 60.4622 bits (145), Expect = 2.033e-7 Identity = 44/142 (30.99%), Postives = 70/142 (49.30%), Query Frame = 0
Query: 44 LVLVQNEEKGRYCCAPPQGFEPGRVLLEEEAYIWGNGHAEWCLECDTPSHASPACPRIRAS----YPPSIVPLLPAIENWMMKDLERVQSLDRARAWIKALIRLRAETKEGMATEKEKEKEGSGWLDPLWALTACNLEQCLQ 181
++ ++GR C A Q F+ G VLLE+ A++ + + CL C H + AC +++ PP ++ L A + M DL+ V +LDRAR +I+ ++ R + LDPL LTA NL +CL+
Sbjct: 8 FTVMNTPDRGRVCVAT-QAFKAGDVLLEDLAFVHASELPDRCLAC-CGFHEASACFKLKPQGPLPCPPELLEELDAAADEMC-DLDAVNTLDRARCFIQCMLMYRKDPLS---------------LDPLAPLTAANLPRCLE 131 The following BLAST results are available for this feature:
BLAST of EWM25581.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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