EWM25581.1, cds5092 (CDS) Nannochloropsis gaditana

Overview
NameEWM25581.1
Unique Namecds5092
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:135178..135404 -
Alignment locationCM002465.1:134852..135038 -
Alignment locationCM002465.1:134468..134623 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25581.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101188g1.6429.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:135178..135404 -
CM002465.1supercontigCM002465.1:134852..135038 -
CM002465.1supercontigCM002465.1:134468..134623 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25581.1 vs. NCBI_GenBank
Match: gi|585107365|gb|EWM25581.1| (hypothetical protein Naga_101188g1 [Nannochloropsis gaditana])

HSP 1 Score: 386.341 bits (991), Expect = 8.397e-136
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query:    1 MVSGASKKKKKKVAAALSLAGPTSSLLKAVYTRLANTLHARFGLVLVQNEEKGRYCCAPPQGFEPGRVLLEEEAYIWGNGHAEWCLECDTPSHASPACPRIRASYPPSIVPLLPAIENWMMKDLERVQSLDRARAWIKALIRLRAETKEGMATEKEKEKEGSGWLDPLWALTACNLEQCLQDARKLAHK 189
            MVSGASKKKKKKVAAALSLAGPTSSLLKAVYTRLANTLHARFGLVLVQNEEKGRYCCAPPQGFEPGRVLLEEEAYIWGNGHAEWCLECDTPSHASPACPRIRASYPPSIVPLLPAIENWMMKDLERVQSLDRARAWIKALIRLRAETKEGMATEKEKEKEGSGWLDPLWALTACNLEQCLQDARKLAHK
Sbjct:    1 MVSGASKKKKKKVAAALSLAGPTSSLLKAVYTRLANTLHARFGLVLVQNEEKGRYCCAPPQGFEPGRVLLEEEAYIWGNGHAEWCLECDTPSHASPACPRIRASYPPSIVPLLPAIENWMMKDLERVQSLDRARAWIKALIRLRAETKEGMATEKEKEKEGSGWLDPLWALTACNLEQCLQDARKLAHK 189          
BLAST of EWM25581.1 vs. NCBI_GenBank
Match: gi|553179160|ref|XP_005852658.1| (hypothetical protein NGA_0683900, partial [Nannochloropsis gaditana CCMP526] >gi|422295874|gb|EKU23173.1| hypothetical protein NGA_0683900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 201.83 bits (512), Expect = 1.536e-63
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0
Query:   45 VLVQNEEKGRYCCAPPQGFEPGRVLLEEEAYIWGNGHAEWCLECDTPSHASPACPRIRASYPPSIVPLLPAIENWMMKDLERVQSLDRARAWIK 138
            +LVQNEEKGRYCCAPPQGFEPGRVLLEEEAYIWGNGHAEWCLECDTPSHASPACPRIRASYPPSIVPLLPAIENWMMKDLERVQSLDRARAWIK
Sbjct:    1 MLVQNEEKGRYCCAPPQGFEPGRVLLEEEAYIWGNGHAEWCLECDTPSHASPACPRIRASYPPSIVPLLPAIENWMMKDLERVQSLDRARAWIK 94          
BLAST of EWM25581.1 vs. NCBI_GenBank
Match: gi|551659499|ref|XP_005832518.1| (hypothetical protein GUITHDRAFT_138770 [Guillardia theta CCMP2712] >gi|428176655|gb|EKX45538.1| hypothetical protein GUITHDRAFT_138770 [Guillardia theta CCMP2712])

HSP 1 Score: 61.2326 bits (147), Expect = 1.058e-7
Identity = 34/89 (38.20%), Postives = 51/89 (57.30%), Query Frame = 0
Query:   52 KGRYCCAPPQGFEPGRVLLEEEAYIWGNGHAEWCLECDTPSHASPACPRIRASYPPSIVPLLPAIENWMMKDLERVQSLDRARAWIKAL 140
            KGR   A  +  E G ++LEEE  +  + HA  C+EC  P H S  C R++  YPP++   +  IE + ++ LE ++ LD AR +IK L
Sbjct:  129 KGRIMVAA-RDIEAGEIILEEEPLVAASWHAHRCIECHEP-HRSSECSRVQHKYPPAVAANMEEIERF-LEGLESIEELDSARRFIKLL 214          
BLAST of EWM25581.1 vs. NCBI_GenBank
Match: gi|299116928|emb|CBN75038.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 60.4622 bits (145), Expect = 2.033e-7
Identity = 44/142 (30.99%), Postives = 70/142 (49.30%), Query Frame = 0
Query:   44 LVLVQNEEKGRYCCAPPQGFEPGRVLLEEEAYIWGNGHAEWCLECDTPSHASPACPRIRAS----YPPSIVPLLPAIENWMMKDLERVQSLDRARAWIKALIRLRAETKEGMATEKEKEKEGSGWLDPLWALTACNLEQCLQ 181
              ++   ++GR C A  Q F+ G VLLE+ A++  +   + CL C    H + AC +++       PP ++  L A  + M  DL+ V +LDRAR +I+ ++  R +                  LDPL  LTA NL +CL+
Sbjct:    8 FTVMNTPDRGRVCVAT-QAFKAGDVLLEDLAFVHASELPDRCLAC-CGFHEASACFKLKPQGPLPCPPELLEELDAAADEMC-DLDAVNTLDRARCFIQCMLMYRKDPLS---------------LDPLAPLTAANLPRCLE 131          
The following BLAST results are available for this feature:
BLAST of EWM25581.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585107365|gb|EWM25581.1|8.397e-136100.00hypothetical protein Naga_101188g1 [Nannochloropsi... [more]
gi|553179160|ref|XP_005852658.1|1.536e-6398.94hypothetical protein NGA_0683900, partial [Nannoch... [more]
gi|551659499|ref|XP_005832518.1|1.058e-738.20hypothetical protein GUITHDRAFT_138770 [Guillardia... [more]
gi|299116928|emb|CBN75038.1|2.033e-730.99conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5104rna5104Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications