rna5100, rna5100 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5100
Unique Name	rna5100
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2077
Alignment location	CM002465.1:117759..119999 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100377g3.7560.mrna
Orig protein id	gnl\|cribi\|Naga_100377g3.7560
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:117759..119999 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100377g3	gene4923	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5100	rna5100-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25587.1	cds5088	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:117759..119999+
coding sequence from alignment at CM002465.1:117759..119999+

mRNA sequence

>rna5100 ID=rna5100|Name=rna5100|organism=Nannochloropsis gaditana|type=mRNA|length=2077bp
ATACCGAGCCCAAAAAATATTGGGGGATTCCCTGCGGAAATTGTCAAGTT
TGGATATTTCCAGCCATAACTAGATAACCTTGATGTACATGTTTAATGTG
ACTATCAGTGCGAAATGTGTCCCAAAAACACAATAAACGGTCTAAACTAC
TCTTCAACTATCAAATTGGTTACTCCTCGAAAAGATTTCAAAGATTCTGG
CAACATGTTTTGGTACCGCGTGATGCAGCGGAACAGCTTCCTCCGGTGCT
TGCGGGGAATTTAGTGGGAACAGGGATGTTCAACATCTGAGCGGGTATTC
AAGGGGGATTCGCTCGGAGCAAGGACGTTCAACATCTCGTCAGGGGCGCT
GCAGAGCTGTGTGCATGTTCGTTGTGTAGGATTTTCATTTGCTTCCCATT
ATTTATGTTTTCTTGTTTCGGATAAGCTTCAGCTCTTTGCATCCTTCGTC
ACGATGAACAATTCAATCTAACATACGAGCTACAAGTTTTTTATTATGTA
GTATCCGTATCCGGATCTCACATCAGATCCTCATTTTAATTCATGTTTGG
GATCCATAATCGGATTATTGGCAAGATTCCTTACAAACATGTGCGCCGTT
GTACAAAAAACGACTACCAAAATTGAAAGCCCAATCACACACTCATTTAT
GTTTGTACCACATCTAATCACGCAAAGCAAACCTTTCAAAAAAACCTCTT
CAACTATGCTCTTCAACAAGTCCTACATGGCCTCCATGAGCCTCCTTATG
TTTGCCGCCGGGGCTGCTGCCACCGAGACGCTTACCCTTCGGGGCTTACA
AGCCGCTGCCACTCCCATGGTGGCGCGCTCGTGCAATGCGGTGAGTGTAA
AATAAATGTTCAAAAGAGTCTTTGATTTCTCTTTTCAAAATGTGGAATGG
TACAAGAGGAACAGTCGGTATCAGTCGGATCCTTCGTCGCACAACTTTCT
CAATGAAAAGCATCCTCTTTCCTCGTCTATACCCTATCCCTTCCGCTCAC
CCGCCGCAGACTGAGTTGGACGCCAGCCTCGACGCACTGGCAGAGGACGC
CAAATGTGGGGCGGTATGGACTACGTTTTCGGACACCATCAGCACCGCTG
AGTTCAACCTGATGCCCCTGGCGGGCCAGGTCAAGGCGTTGGAAGCCTTC
TGCGCGACCCCCTGTGGGCCCAGCTTCGACAAGGCCGTGACCGAATGGCG
CAATTGGTGCGACAGCAAAAAGGCGACCTTCACTCCCATGGACGACGTTG
ACGAGGATGAGGACGAGGACGAGGACATGCCGGTCACCTTTGATGGCTTT
GTAGCCGAGTTTGGGTGCTCCAAATCCGCTGGCGGTCAATTCTGTGCCCA
GTTGGTCATGGCGGAGATCGCGGCCAAGCCCGACGACTTGGAGACGAAAT
GCGATTACTACAGCAGCTGCTGTTTTGGCGAGTTGAACCGCATCGTCAAG
GTCACGGACCTCGAGAGCCGAGCCTCTGCATTGGATGCCAAATGCCCGGG
AGCACGCGCCGCGCTCGAGAGCAAGTGCGCGACGGCCTAAGCAAACAGTG
GCAACAGGGTGCGATAAGGGAAATGTTGACACCATCAAGATGTCAACCAG
ACAATATCCCTCGCACGCGGCCTCTTACTATGCTGCTCTATGGGTTTACA
GAACTGATTTATATATTTTCTATTTATATCTATATTGCAAGCTACGAAGA
CGTGATGTTTTCGTGGGCTCTCGCGTCCATTTTTCCCCATTAAGTCAGCC
TTATATGTAGAAAGTAAGACAAGGAGACATCCTGGGGAGGAGCGGTGTGC
GATAAAATTCTTGTGTGAAACAATTGAAGCGCCTGCACGAGGAGGAAAGA
AAGTTGTTTATTATTTATACGTAGCCATATTTGGGATTGAATGTGGAGTT
GTGAAGGAAATAACCCAAAATTATTGTTCTTAGCTCACTGTAAGCATTGT
TTTCTTTTCACCTATCATGTTGTACGGATGCCAACATAAATGGCTTGGCA
GGAGGGATGGTCACAGAGGCCTGGGTGAGTACATTACATGTTAGGATCAA
ATACGGGAAGGGAATGAAGATATCTGG

protein sequence of rna5100

>rna5100-protein ID=rna5100-protein|Name=rna5100|organism=Nannochloropsis gaditana|type=polypeptide|length=216bp
MWNGTRGTVGISRILRRTTFSMKSILFPRLYPIPSAHPPQTELDASLDAL
AEDAKCGAVWTTFSDTISTAEFNLMPLAGQVKALEAFCATPCGPSFDKAV
TEWRNWCDSKKATFTPMDDVDEDEDEDEDMPVTFDGFVAEFGCSKSAGGQ
FCAQLVMAEIAAKPDDLETKCDYYSSCCFGELNRIVKVTDLESRASALDA
KCPGARAALESKCATA

mRNA from alignment at CM002465.1:117759..119999+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5100 ID=rna5100|Name=rna5100|organism=Nannochloropsis gaditana|type=mRNA|length=2241bp|location=Sequence derived from alignment at CM002465.1:117759..119999+ (Nannochloropsis gaditana)
TTGGGGGATTCCCTGCGGAAATTGTCAAGTTTGGATATTTCCAGCCATAA
CTAGATAACCTTGATGTACATGTTTAATGTGACTATCAGTGCGAAATGTG
TCCCAAAAACACAATAAACGGTCTAAACTACTCTTCAACTATCAAATTGG
TTACTCCTCGAAAAGATTTCAAAGATTCTGGCAACATGTTTTGGTACCGC
GTGATGCAGCGGAACAGCTTCCTCCGGTGCTTGCGGGGAATTTAGTGGGA
ACAGGGATGTTCAACATCTGAGCGGGTATTCAAGGGGGATTCGCTCGGAG
CAAGGACGTTCAACATCTCGTCAGGGGCGCTGCAGAGCTGTGTGCATGTT
CGTTGTGTAGGATTTTCATTTGCTTCCCATTATTTATGTTTTCTTGTTTC
GGATAAGCTTCAGCTCTTTGCATCCTTCGTCACGATGAACAATTCAATCT
AACATACGAGCTACAAGTTTTTTATTATGTAGTATCCGTATCCGGATCTC
ACATCAGATCCTCATTTTAATTCATGTTTGGGATCCATAATCGGATTATT
GGCAAGATTCCTTACAAACATGTGCGCCGTTGTACAAAAAACGACTACCA
AAATTGAAAGCCCAATCACACACTCATTTATGTTTGTACCACATCTAATC
ACGCAAAGCAAACCTTTCAAAAAAACCTCTTCAACTATGCTCTTCAACAA
GTCCTACATGGCCTCCATGAGCCTCCTTATGTTTGCCGCCGGGGCTGCTG
CCACCGAGACGCTTACCCTTCGGGGCTTACAAGCCGCTGCCACTCCCATG
GTGGCGCGCTCGTGCAATGCGGTGAGTGTAAAATAAATGTTCAAAAGAGT
CTTTGATTTCTCTTTTCAAAATGTGGAATGGTACAAGAGGAACAGTCGGT
ATCAGTCGGATCCTTCGTCGCACAACTTTCTCAATGAAAagcatcctctt
tcctcgtctATACCCTATCCCTTCCGCTCACCCGCCGCAGACTGAGTTGG
ACGCCAGCCTCGACGCACTGGCAGAGGACGCCAAATGTGGGGCGGTATGG
ACTACGTTTTCGGACACCATCAGCACCGCTGAGTTCAACCTGATGCCCCT
GGCGGGCCAGGTCAAGGTAGGGACGTGGAAAGCCGAGAACTTGTGAGAGG
AAATTGGAAACTCTGTGACAGGAAATGACGAGCTGCTATGCTTTCCCAAT
CTAGGATCGCCTCAGAATATTCTTGACGTGGCTGGTATTTTCCCACCCTG
AATCCACACCTCTGACCTTCACTGtgctccccttttccttatCCTCCAGG
CGTTGGAAGCCTTCTGCGCGACCCCCTGTGGGCCCAGCTTCGACAAGGCC
GTGACCGAATGGCGCAATTGGTGCGACAGCAAAAAGGCGACCTTCACTCC
CATGGACGACGttgacgaggatgaggacgaggacgaggacatgcCGGTCA
CCTTTGATGGCTTTGTAGCCGAGTTTGGGTGCTCCAAATCCGCTGGCGGT
CAATTCTGTGCCCAGTTGGTCATGGCGGAGATCGCGGCCAAGCCCGACGA
CTTGGAGACGAAATGCGATTACTACAGCAGCTGCTGTTTTGGCGAGTTGA
ACCGCATCGTCAAGGTCACGGACCTCGAGAGCCGAGCCTCTGCATTGGAT
GCCAAATGCCCGGGAGCACGCGCCGCGCTCGAGAGCAAGTGCGCGACGGC
CTAAGCAAACAGTGGCAACAGGGTGCGATAAGGGAAATGTTGACACCATC
AAGATGTCAACCAGACAATATCCCTCGCACGCGGCCTCTTACTATGCTGC
TCTATGGGTTTACAGAACTGATTTATATATTTTCTATTTATATCTATATT
GCAAGCTACGAAGACGTGATGTTTTCGTGGGCTCTCGCGTCCATTTTTCC
CCATTAAGTCAGCCTTATATGTAGAAAGTAAGACAAGGAGACATCCTGGG
GAGGAGCGGTGTGCGATAAAATTCTTGTGTGAAACAATTGAAGCgcctgc
acgaggaggaaagaaagttgTTTATTATTTATACGTAGCCATATTTGGGA
TTGAATGTGGAGTTGTGAAGGAAATAACCCAAAATTATTGTTCTTAGCTC
ACTGTAAGcattgttttcttttcaccTATCATGTTGTACGGATGCCAACA
TAAATGGCTTGGCAGGAGGGATGGTCACAGAGGCCTGGGTGAGTACATTA
CATGTTAGGATCAAATACGGGAAGGGAATGAAGATATCTGG

Coding sequence (CDS) from alignment at CM002465.1:117759..119999+

>rna5100 ID=rna5100|Name=rna5100|organism=Nannochloropsis gaditana|type=CDS|length=1302bp|location=Sequence derived from alignment at CM002465.1:117759..119999+ (Nannochloropsis gaditana)
ATGTGGAATGGTACAAGAGGAACAGTCGGTATCAGTCGGATCCTTCGTCG
CACAACTTTCTCAATGAAAagcatcctctttcctcgtctATACCCTATCC
CTTCCGCTCACCCGCCGCAGACTGAGTTGGACGCCAGCCTCGACGCACTG
GCAGAGGACGCCAAATGTGGGGCGGTATGGACTACGTTTTCGGACACCAT
CAGCACCGCTGAGTTCAACCTGATGCCCCTGGCGGGCCAGGTCAAGGCGT
TGGAAGCCTTCTGCGCGACCCCCTGTGGGCCCAGCTTCGACAAGGCCGTG
ACCGAATGGCGCAATTGGTGCGACAGCAAAAAGGCGACCTTCACTCCCAT
GGACGACGttgacgaggatgaggacgaggacgaggacatgcCGGTCACCT
TTGATGGCTTTGTAGCCGAGTTTGGGTGCTCCAAATCCGCTGGCGGTCAA
TTCTGTGCCCAGTTGGTCATGGCGGAGATCGCGGCCAAGCCCGACGACTT
GGAGACGAAATGCGATTACTACAGCAGCTGCTGTTTTGGCGAGTTGAACC
GCATCGTCAAGGTCACGGACCTCGAGAGCCGAGCCTCTGCATTGGATGCC
AAATGCCCGGGAGCACGCGCCGCGCTCGAGAGCAAGTGCGCGACGGCCTA
AATGTGGAATGGTACAAGAGGAACAGTCGGTATCAGTCGGATCCTTCGTC
GCACAACTTTCTCAATGAAAagcatcctctttcctcgtctATACCCTATC
CCTTCCGCTCACCCGCCGCAGACTGAGTTGGACGCCAGCCTCGACGCACT
GGCAGAGGACGCCAAATGTGGGGCGGTATGGACTACGTTTTCGGACACCA
TCAGCACCGCTGAGTTCAACCTGATGCCCCTGGCGGGCCAGGTCAAGGCG
TTGGAAGCCTTCTGCGCGACCCCCTGTGGGCCCAGCTTCGACAAGGCCGT
GACCGAATGGCGCAATTGGTGCGACAGCAAAAAGGCGACCTTCACTCCCA
TGGACGACGttgacgaggatgaggacgaggacgaggacatgcCGGTCACC
TTTGATGGCTTTGTAGCCGAGTTTGGGTGCTCCAAATCCGCTGGCGGTCA
ATTCTGTGCCCAGTTGGTCATGGCGGAGATCGCGGCCAAGCCCGACGACT
TGGAGACGAAATGCGATTACTACAGCAGCTGCTGTTTTGGCGAGTTGAAC
CGCATCGTCAAGGTCACGGACCTCGAGAGCCGAGCCTCTGCATTGGATGC
CAAATGCCCGGGAGCACGCGCCGCGCTCGAGAGCAAGTGCGCGACGGCCT
AA

Synonyms

Publications